Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam05g1049 ATGTGGTCCCCGCTACCCCTAGGTGGCCTCCATCCAAACACACTCATAAATCCAACGGCTCATATTCATTCTTCTTTTAAACTATCATTGAACTGCCACTTCAATCCTTTCTCATCATTTCCTTTCTTTTTCTCCCTCTTTTTCGTGCATTCACTGAACAAGCTGCAGCTCAGTAATAGCAGCCGGAACTTCCTCCGACGGCCGGTCGCTGGAATGTGCGATCCCACTACCATGATTAAAACCAAGAATGCTCGCCGGAGACGGCTGAGAGTTCGTAAACTGAGGTACAAATGGCAGAGGATGGTGCACGCGGCGGAGGAAGGTGAGGGCAATGAATTAAGTGATAATGGAGTTTCCAAATCGAATTGTGATCAAGTACTAGTCTCTGAGAAGGAATCTTCTTCGGCGTTGGACTGTCGAGTGTATAGCGAGATGTCGATTATAGGGCGGAGGAAGGAGATGGAAGATGAAGTGAGAGTGGAATTGGGATTGACGACGATTAATGATGAAAAGTACAATTTTTTCGCCGTGTACGATGGACACGGCGGCGCTCAGGTGGCGCAGGTGTGCCGTGAACGGTTGCACCTGATTGTGGCGGAGGAGATTGTGGCTCGGGGAGAGATGGATGAGGCGGAGTGGGGGAGGTTGATGGAGAGGTGCTTTGAGAGAATGGACGACGAAGTGAATAGCGGCGCCGCCACGATGAAGACGATCGGATCGGCGGTTGTTACGGCGGTGATCGGAAAGGAAGAGGTGGTGGTGGCCAATTGCGGCGATTGTCGAGCCGTTTTGGCTAGGGATGGTATTGCGTTGCCCTTGTCTAACGATCATAAGCCTGGTAGAGCTGATGAGTTGAAGAGAATTGAATCTGCCGGTGGAAGGGTCATAAATTGGAATGGCTACCGGGTGCTAGGAGTTCTTGCCACTTCAAGATCCATCGGTGATGAATATCTCAAACCATTTGTTATCTCCAAACCAGAAGTGACTGTGACCAAGCGAACTGACAACGATGAGTTCCTCATATTAGGAAGTGATGGTCTGTGGGACGTTATTTCGAATGAAATTGCCTGCAACATAGTGAGGAGATGTTTTGGAGGCAAAATGAAGAGGATTTCGTTGAAGGTGGCGAACGACAGCCATGTCGCAGAAGCTGCAGCAGTGTTGGCGGAGCTCGCTGTGGCTCGTGGAAGCAAGGACAACATCAGTGTAATAGTAGTAGATTTGAGGAAACCAAACCGTTGCTCTCCATGA 1251 49.48 MWSPLPLGGLHPNTLINPTAHIHSSFKLSLNCHFNPFSSFPFFFSLFFVHSLNKLQLSNSSRNFLRRPVAGMCDPTTMIKTKNARRRRLRVRKLRYKWQRMVHAAEEGEGNELSDNGVSKSNCDQVLVSEKESSSALDCRVYSEMSIIGRRKEMEDEVRVELGLTTINDEKYNFFAVYDGHGGAQVAQVCRERLHLIVAEEIVARGEMDEAEWGRLMERCFERMDDEVNSGAATMKTIGSAVVTAVIGKEEVVVANCGDCRAVLARDGIALPLSNDHKPGRADELKRIESAGGRVINWNGYRVLGVLATSRSIGDEYLKPFVISKPEVTVTKRTDNDEFLILGSDGLWDVISNEIACNIVRRCFGGKMKRISLKVANDSHVAEAAAVLAELAVARGSKDNISVIVVDLRKPNRCSP 416
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9518755 9521039 - CaPI482276_05g010490.1 Cam05g1049 126453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam05g1049 416 ProSiteProfiles PPM-type phosphatase domain profile. 141 408 IPR001932 -
Cam05g1049 416 SUPERFAMILY PP2C-like 133 410 IPR036457 -
Cam05g1049 416 PANTHER PROTEIN PHOSPHATASE 120 407 IPR015655 GO:0004722(PANTHER)|GO:0004722(InterPro)|GO:0005634(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Cam05g1049 416 CDD PP2Cc 140 408 IPR001932 -
Cam05g1049 416 ProSitePatterns PPM-type phosphatase domain signature. 174 182 IPR000222 GO:0043169(InterPro)
Cam05g1049 416 SMART PP2C_4 126 406 IPR001932 -
Cam05g1049 416 Pfam Protein phosphatase 2C 143 401 IPR001932 -
Cam05g1049 416 Gene3D - 136 414 IPR036457 -
Cam05g1049 416 FunFam Protein phosphatase 2C 50 161 415 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam03g0118 Cam-Chr3:2108061 Cam05g1049 Cam-Chr5:9518755 9.60E-67 dispersed
Cam05g0910 Cam-Chr5:8178436 Cam05g1049 Cam-Chr5:9518755 4.20E-65 dispersed
Cam05g1049 Cam-Chr5:9518755 Cam07g1177 Cam-Chr7:26154272 7.60E-59 dispersed
Cam05g1043 Cam-Chr5:9434930 Cam05g1049 Cam-Chr5:9518755 8.50E-35 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam05g1049 K14497 - csv:101214188 593.578