Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam05g1061 ATGGATTTGGACAGTATCGAGTGTGTATCTTCTTCAGATGGTCTCGATGAAGACGAGATCCATCTGCACCACACTCTTCATCCTTATTCCCAATCTCTTCATCTTCCCGAGTTGTCCACATCGAAGCAACGTTATGGAAACAACAACAGCGCTGTGAGCGGCCCAACTGCAACTGCGCCGGCAACTAACGTTCATGAATTGCTGGAGTGCCCTGTGTGCACTAATTCTATGTACCCTCCCATTCATCAGTGCCACAATGGACATACCTTATGTTCTACATGTAAAACGAGAGTTCACAATCGGTGCCCAACTTGTAGACAAGAGCTTGGAGATATTAGGTGCTTAGCACTGGAGAAGGTGGCAGAGTCACTTGAACTGCCTTGCAAGTATTATTCGTTGGGTTGCTCTGAGATATTCCCATACTACAGTAAACTTAAGCACGAGGGTTTGTGCAACTACAGACCCTATGGTTGCCCATATGCTGGTTCAGAATGCTCTGCTGTTGGGGACATTCCTTTCCTTGTTGCCCATCTCAGGGATGATCATAAGGTGGATATGCACACTGGCTGCACATTTAACCATCGCTATGTTAAATCCAATCCAAGGGAAGTGGAGAATGCCACTTGGATGCTTACTGTTTTTCATTGTTTTGGTCAATATTTCTGCCTTCACTTTGAAGCTTTTCAGCTTGGCATGGCTCCAGTCTACATGGCCTTCCTGCGTTTCATGGGCGATGAGAATGAGGCGCGAACCTACAACTACAGTCTCGAGGTTGGTGGATATGGGCGAAAACTGATATGGGAGGGTACACCACGAAGTATTAGAGATAGTCATCGAAAAGTCAGGGACAGCCACGATGGATTAATCATCCAAAGAAATATGGCTCTTTTCTTCTCTGGTGGGGACAGAAAGGAACTGAAGCTGAGGGTTACAGGAAGGATATGGAAGGAACAAAACCCAGATGCTGGTGTCTGCATACCAAACTTTTGTAGCTAA 996 45.98 MDLDSIECVSSSDGLDEDEIHLHHTLHPYSQSLHLPELSTSKQRYGNNNSAVSGPTATAPATNVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLELPCKYYSLGCSEIFPYYSKLKHEGLCNYRPYGCPYAGSECSAVGDIPFLVAHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDENEARTYNYSLEVGGYGRKLIWEGTPRSIRDSHRKVRDSHDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQNPDAGVCIPNFCS 331
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9702668 9706352 - CaPI482276_05g010610.1 Cam05g1061 126465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam05g1061 331 ProSiteProfiles Zinc finger SIAH-type profile. 123 183 IPR013010 GO:0008270(InterPro)
Cam05g1061 331 CDD RING-HC_SIAHs 68 106 - -
Cam05g1061 331 FunFam E3 ubiquitin-protein ligase SINAT3 122 178 - -
Cam05g1061 331 FunFam E3 ubiquitin-protein ligase SINAT3 11 121 - -
Cam05g1061 331 CDD Sina 184 312 - -
Cam05g1061 331 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 177 311 IPR008974 GO:0005515(InterPro)
Cam05g1061 331 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 32 122 IPR013083 -
Cam05g1061 331 ProSiteProfiles Zinc finger RING-type profile. 70 106 IPR001841 -
Cam05g1061 331 FunFam E3 ubiquitin-protein ligase SINAT5-like 179 311 - -
Cam05g1061 331 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 49 313 IPR052088 GO:0005737(PANTHER)|GO:0061630(PANTHER)
Cam05g1061 331 Pfam Sina, zinc finger 119 194 - -
Cam05g1061 331 Pfam E3 ubiquitin-protein ligase sina/sinah, RING finger 70 105 IPR049548 -
Cam05g1061 331 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 123 176 IPR013083 -
Cam05g1061 331 SUPERFAMILY RING/U-box 57 109 - -
Cam05g1061 331 Pfam Sina, TRAF-like domain 214 311 IPR018121 GO:0005737(InterPro)|GO:0006511(InterPro)|GO:0007275(InterPro)
Cam05g1061 331 SUPERFAMILY TRAF domain-like 123 315 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam04g0103 Cam-Chr4:3182037 Cam05g1061 Cam-Chr5:9702668 8.50E-132 dispersed
Cam05g1061 Cam-Chr5:9702668 Cam06g0099 Cam-Chr6:2913643 2.00E-142 dispersed
Cam05g1061 Cam-Chr5:9702668 Cam05g1062 Cam-Chr5:9707315 1.40E-193 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam05g1061 K04506 - csv:105434867 689.878