Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam05g1062 ATGGCCGCCGCTGCTCTCAGGTCCAGGTCTTCCAAGGAAGTTGCCACTTTAACCCTTTCTCGTTGTAGACACTGTATATCCAATTCTATTCACGCTGCTACCAACCCCAGTTCTCACTGCATCAACCGTAACAAACCCAACGACCTTTATCTCAACTCGCCTTACCACTTGGTCTCTTTCAAGCCCGTCTCACTCAGAGGCGACTTCGTTGACAACGGGACTCAACCCCCCGATCATCGTAGGATTTACCAGAATTCTACCAAGAACTTGAATCACAAGTTCAGCAAGAGGGGTTGTTTTATGAGCACTTATGGAGACCCGCCGGAGGTGTGGTCTGGAGATGGGATTGTGATTCGTGGGAGTAATTCAAGCTTGAATGGTCGCGGTGGCGGCGGTGGCAGCGGTGGCAACTCCAACTCTGGTTCTGGTGGTGGGTTTGCCTCGAACTCCAATGATGGGTGTTGGGGTGGCTCTAATTTGGGACCTAATTTTCCTACTCCGAAGGAAATCGCGAAGGGGCTTGATAAGTTTGTGATTGGTCAGGAGAGAGCTAAAAAGGTGCTCTCTGTGGGAGTTTACAATCACTACAAGCGCATCTATCATGAATCGCTACAAAGGCCGACAGGAGATACAGTTAACAACAAAGCTGATGCTGTTGATGATGATAAAGTGGAACTTGAGAAAAGTAACATCCTTCTGATGGGGCCAACAGGCTCAGGGAAAACACTACTCGCCAAAACCTTGGCACGGTTTGTTAATGTCCCCTTTGTTATTGCAGATGCAACTACCCTAACACAGGCAGGATATGTTGGAGAAGATGTGGAGTCTATATTATACAAACTTCTGATGGTTGCTGATTATAATGTGGCAGCTGCACAGCAGGGCATTGTTTACATTGATGAAGTCGATAAAATTACCAAGAAGGCAGAGAGCCTTAATATTAGCAGAGATGTGTCAGGAGAGGGCGTGCAGCAGGCATTATTAAAAATGCTAGAAGGAACGATTGTCAATGTGCCTGAGAAGGGCGCACGAAAGCATCCCAGAGGTGAAAATATCCAGATTGACACTAAGGATATTCTTTTCATATGCGGGGGTGCCTTCATTGACTTGGAAAAAACAATCTCAGAAAGGCGCCAAGATTCTTCTTTAGGGTTTGGGGCCCCAGTTCGTGCAAACATGAGGGCAGGTGGTGTTACAGATGCCATGGTTACTTCTTCTCTGTTGGAGACTGTTGAAAGTAGTGATCTCATTGCATATGGGTTGATACCCGAATTTGTTGGTCGATTCCCAATCCTTGTCAGTTTGTCAGCCCTAACAGAAAACCAACTTGTTCAGGTCTTGACAGAGCCAAAAAATGCATTAGGAAAGCAGTATAGAAAGATGTTCCAAATGAATGATGTCAAGCTCCACTTCACAGAAAATGCCCTGAGATTAATAGCAAGAAAGGCAATGTCGAAGAACACTGGAGCACGTGGTTTGCGATCAATATTGGAGAATCTATTGATGGATTCTATGTATGAGATTCCTGATGTTAGAACAGGTGAGAATATAATTGATGCTGTCATCGTTGATGAAGAATCCATTGGGTTGGACAGACCCGGTTCTGGTGCCAAAATTCTTTATGGAAAGGGTGCATTGGAACGCTATCTTTCAGGACAAAAGGTAGAAGAGAGAAAGGCAACAAGTCAGGATTCCGAGAGAGAGCCAGAACCTGAAGGCCTTCTTTCGATTCCATTGATCTACCCCTTTTCCTCTTCTTTGCCTTCTTTACGATTTCCTCGACGCAATTTGCACCAACTGGTGAAATTTTCAAATTTTTTGTTGTGGTTAATGGATTTGGATAGTATTGAGTGTGTATCATCTTCTGATGGTCTCGATGAAGATGAGATCCATCTTCATCACACTCTTCATCCTTATTCCCATTCTCATCATCATCCAGAGTTGTCAGCGACGAAGCCACGTAATGGAAGCAATAATAGCGGTATAACAGTTCCCACTGCGACTGCTCCCGCCACTAGCGTCCATGAATTGCTTGAGTGCCCTGTCTGTACCAATTCTATGTACCCTCCCATCCATCAGTGCCACAATGGACATACCTTATGTTCTACATGTAAAACACGGGTTCATAATCGTTGCCCTACTTGTAGACAAGAGCTTGGAGATATTAGGTGCTTAGCACTCGAGAAGGTGGCAGAGTCGCTTGAATTGCCTTGCAAGTATTATTCATTGGGATGTACTGAGATATTCCCATACTACAGTAAACTTAAGCACGAGGCTTTGTGCAATTATAGACCCTATAGTTGCCCATATGCTGGTTCGGAATGCTCTGCTGTTGGGGACATTCCTTTCCTTGTTGCCCATCTGAGGGATGATCATAAGGTGGATATGCACACGGGCTGCACATTTAACCATCGCTATGTGAAATCCAATCCAAGGGAAGTGGAAAATGCCACTTGGATGCTTACTGTGTTCCATTGTTTTGGTCAATATTTCTGCCTTCACTTTGAAGCCTTTCAACTTGGCATGGCCCCAGTCTATATGGCTTTCCTTCGTTTCATGGGTGATGAGAATGAGGCACGAACCTACAGCTACAGTCTCGAGGTTGGTGGATATGGGCGAAAACTAATATGGGAGGGCACCCCGCGAAGTATTAGAGATAGTCATCGAAAAGTGAGGGACAGCCATGATGGGCTAATCATTCAAAGAAATATGGCTCTTTTCTTCTCTGGTGGGGACAGGAAGGAGCTGAAACTAAGAGTTACAGGAAGGATATGGAAGGAACAAAACCCAGATGCTGGAGTCTGCATACCGAACCTGTGTAGCTAA 2826 45.22 MAAAALRSRSSKEVATLTLSRCRHCISNSIHAATNPSSHCINRNKPNDLYLNSPYHLVSFKPVSLRGDFVDNGTQPPDHRRIYQNSTKNLNHKFSKRGCFMSTYGDPPEVWSGDGIVIRGSNSSLNGRGGGGGSGGNSNSGSGGGFASNSNDGCWGGSNLGPNFPTPKEIAKGLDKFVIGQERAKKVLSVGVYNHYKRIYHESLQRPTGDTVNNKADAVDDDKVELEKSNILLMGPTGSGKTLLAKTLARFVNVPFVIADATTLTQAGYVGEDVESILYKLLMVADYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGENIQIDTKDILFICGGAFIDLEKTISERRQDSSLGFGAPVRANMRAGGVTDAMVTSSLLETVESSDLIAYGLIPEFVGRFPILVSLSALTENQLVQVLTEPKNALGKQYRKMFQMNDVKLHFTENALRLIARKAMSKNTGARGLRSILENLLMDSMYEIPDVRTGENIIDAVIVDEESIGLDRPGSGAKILYGKGALERYLSGQKVEERKATSQDSEREPEPEGLLSIPLIYPFSSSLPSLRFPRRNLHQLVKFSNFLLWLMDLDSIECVSSSDGLDEDEIHLHHTLHPYSHSHHHPELSATKPRNGSNNSGITVPTATAPATSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLELPCKYYSLGCTEIFPYYSKLKHEALCNYRPYSCPYAGSECSAVGDIPFLVAHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDENEARTYSYSLEVGGYGRKLIWEGTPRSIRDSHRKVRDSHDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQNPDAGVCIPNLCS 941
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9707315 9720177 - CaPI482276_05g010620.1 Cam05g1062 126466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam05g1062 941 Pfam AAA domain (Cdc48 subfamily) 227 431 IPR003959 GO:0005524(InterPro)|GO:0016887(InterPro)
Cam05g1062 941 FunFam CLP protease regulatory subunit CLPX3 mitochondrial 158 436 - -
Cam05g1062 941 SUPERFAMILY TRAF domain-like 733 925 - -
Cam05g1062 941 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 733 788 IPR013083 -
Cam05g1062 941 ProSiteProfiles Zinc finger SIAH-type profile. 733 793 IPR013010 GO:0008270(InterPro)
Cam05g1062 941 SMART ClpB_D2_small_2 438 530 IPR019489 -
Cam05g1062 941 NCBIfam ATP-dependent protease ATP-binding subunit ClpX 163 525 IPR004487 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0051082(InterPro)|GO:0140662(InterPro)
Cam05g1062 941 CDD Sina 794 922 - -
Cam05g1062 941 ProSiteProfiles Zinc finger RING-type profile. 680 716 IPR001841 -
Cam05g1062 941 Gene3D - 160 436 IPR027417 -
Cam05g1062 941 SMART AAA_5 227 389 IPR003593 GO:0016887(InterPro)
Cam05g1062 941 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 164 523 IPR027417 -
Cam05g1062 941 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 642 732 IPR013083 -
Cam05g1062 941 FunFam ATP-dependent Clp protease ATP-binding subunit ClpX 437 536 - -
Cam05g1062 941 Gene3D - 437 534 - -
Cam05g1062 941 CDD RecA-like_ClpX 165 435 - -
Cam05g1062 941 SUPERFAMILY RING/U-box 667 719 - -
Cam05g1062 941 MobiDBLite consensus disorder prediction 122 144 - -
Cam05g1062 941 MobiDBLite consensus disorder prediction 638 661 - -
Cam05g1062 941 FunFam E3 ubiquitin-protein ligase SINAT3 732 788 - -
Cam05g1062 941 Pfam Sina, zinc finger 729 804 - -
Cam05g1062 941 FunFam E3 ubiquitin-protein ligase SINAT5-like 789 921 - -
Cam05g1062 941 FunFam E3 ubiquitin-protein ligase SINAT3 621 731 - -
Cam05g1062 941 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 790 921 IPR008974 GO:0005515(InterPro)
Cam05g1062 941 CDD RING-HC_SIAHs 678 716 - -
Cam05g1062 941 Pfam Sina, TRAF-like domain 824 921 IPR018121 GO:0005737(InterPro)|GO:0006511(InterPro)|GO:0007275(InterPro)
Cam05g1062 941 Pfam C-terminal, D2-small domain, of ClpB protein 438 507 IPR019489 -
Cam05g1062 941 Pfam E3 ubiquitin-protein ligase sina/sinah, RING finger 680 715 IPR049548 -
Cam05g1062 941 PANTHER ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPX-LIKE, MITOCHONDRIAL-RELATED 21 554 IPR050052 GO:0005524(PANTHER)|GO:0005759(PANTHER)|GO:0016887(PANTHER)|GO:0051603(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam05g1062 Cam-Chr5:9707315 Cam08g0185 Cam-Chr8:3815345 1.50E-182 dispersed
Cam05g1061 Cam-Chr5:9702668 Cam05g1062 Cam-Chr5:9707315 1.40E-193 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam05g1062 K03544 - csv:101215939 989.178