Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam05g1072 ATGGCTTTGCTGAGTCCTCGATTGCATAGATTCCGGCTAACCAAGCTCCACCATACCTCCGCCTCCAAACCCACCAAAACAACTAAGCTCACTCTCACAAGAAAAACCAGATGCTGCTCTGCCATAGCTATTGATGCTCCATCTTCTTTAACAGATGCTGCAGGAATCAGATGGGGTTCCACTACTTTGCAAGGCTTGCGAGAAGAAATGGAAGACGATGCTGTTGTGCGGTCTGATGGTTTCAATGGCTTCTTGTTTGCTGCAGTGTTCGATGGCCATGGTGGCCATTCCTCTGTCAAGTTCCTCAGGGAGGAGCTGTACAAAGACTGCGTCGTAGCTTTACAAGGCGGCCTGCTATTGAATGGAGGGGATTTTGAAGTGATAAAATCGGCGTTGGAGAAAGCTTTTGATGATACTGATAAGAGATTACTCCTTTTGCTTGAGGCAGCTGGGGAGGAAGATGAATCTGGTTCCACTGCCACTGTTGCATTCATTCGAAATGATGTGCTGTTCATTTCACATATTGGTGACTCTTGTATTGTATTATCTCGTTCTGGAGGAGCACAGGTGTTGACTAGTTCTCATCGGCCTTATGGAAATAACAGCACTTCACTACAAGAAATTAGAAGAATTAGAGAAGCAGGTGGATGGATTGTTAATGGGAGAATCTGCGGGGACATCTCTGTATCGCGTGCATTTGGTGACATACGATTCAAGACAAAGAAAATCGAGATGCTACAAAAAGGAGTTGAAGAAGGGAGATGGTCAGAAAAATTTATTTCTCGTGTACAGTTCAATGGAGATTTGGTTACTGCATCACCAGAAATTTTCCAAGTTACGCTCGGATCAAATGTTGAATTTATACTGATGGCATCAGATGGCCTATGGGATTACATGAATAGCTCTGATGCGGTTATATTTGTTCGGAATGAACTTCGACAGCATGGCGATGTTCAGCTAGCATGTGAAGCCCTCGCTCAAGCAGCCTTGGATAAAGGGTCACAAGACAATATCAGCATTATCATGGCTGATTTAGGGCGGACAGATTGGCAAAATTTGCCCCTTAAGCAAGACAATGTCATATTTGAGCTGGCTCAAGCTTTCGCTACGATCGGACTTGTTTCTTTTGGTATTTGGGTAGGTCAGAATGGCTTAGATTATGACCAGCGGGGTCTTAACGGTAACATGTGGATCATCAGTAGTTATTTTGATTTTCAATATAACAATTGA 1230 43.74 MALLSPRLHRFRLTKLHHTSASKPTKTTKLTLTRKTRCCSAIAIDAPSSLTDAAGIRWGSTTLQGLREEMEDDAVVRSDGFNGFLFAAVFDGHGGHSSVKFLREELYKDCVVALQGGLLLNGGDFEVIKSALEKAFDDTDKRLLLLLEAAGEEDESGSTATVAFIRNDVLFISHIGDSCIVLSRSGGAQVLTSSHRPYGNNSTSLQEIRRIREAGGWIVNGRICGDISVSRAFGDIRFKTKKIEMLQKGVEEGRWSEKFISRVQFNGDLVTASPEIFQVTLGSNVEFILMASDGLWDYMNSSDAVIFVRNELRQHGDVQLACEALAQAALDKGSQDNISIIMADLGRTDWQNLPLKQDNVIFELAQAFATIGLVSFGIWVGQNGLDYDQRGLNGNMWIISSYFDFQYNN 409
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9793050 9796970 + CaPI482276_05g010720.1 Cam05g1072 126476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam05g1072 409 CDD PP2Cc 56 345 IPR001932 -
Cam05g1072 409 SUPERFAMILY PP2C-like 54 346 IPR036457 -
Cam05g1072 409 SMART PP2C_4 47 343 IPR001932 -
Cam05g1072 409 Pfam Protein phosphatase 2C 59 338 IPR001932 -
Cam05g1072 409 ProSiteProfiles PPM-type phosphatase domain profile. 57 345 IPR001932 -
Cam05g1072 409 Gene3D - 56 351 IPR036457 -
Cam05g1072 409 ProSitePatterns PPM-type phosphatase domain signature. 86 94 IPR000222 GO:0043169(InterPro)
Cam05g1072 409 PANTHER PROTEIN PHOSPHATASE 2C 55 344 IPR015655 GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0006470(PANTHER)
Cam05g1072 409 FunFam Protein phosphatase 2C 57 56 352 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam05g1072 Cam-Chr5:9793050 Cam08g1080 Cam-Chr8:17139833 5.20E-28 dispersed
Cam05g1072 Cam-Chr5:9793050 Cam10g0048 Cam-Chr10:2101953 1.90E-14 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam05g1072 K04457 - csv:101218076 671.003