Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam05g1085 ATGCTCTCCGGTGCTTACTCTCGTTTTGCATCACAAACTGTAATGCGGAAACACAACAGAGTTGATCCCATTAACCCCCCCATTCCCTCTCTACTTTCTCTCTCACAAAACCTATCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTCCATTGCCTTCAATCACACTGTTTCAGCACAAAATCAAAACCCCACTTTCCCCAATGGCCGCTGTTCACCGCTGAGAATCTCTGTTTTCATGGATTCTGACCGCCATTTTCGTACCACAAGCAGCAACAGTACCAGTTCCACCGCCGCACCCTCTAGCGAGCTCTTCATTTGCTTCACTTCTCGCTTCTCTTCTTCTTCCTCCATGAAGATCTCCTCCAAGTCCATTCTCAGTCCCGGCCGTGCTCGTGAGCCCTCCCAAATCTCCCTCTCTACTTCCCTCAGCCGCCGTCTCAAATCCAGCGGTAGTCTCAAGGGCGGTCAAGCTTCCCCCATGTTTCCCACTGGCGGGAAGAAGCGAGGCTGTGCCTTTGACAATCCGGAACCCTCGTCGCCCAAGGTCACTTGCATTGGTCAGGTTAGGGTTAAGACGAAGAAGCAGGGGAAGAAAATGAGGGCTAGATCGCAGAAGCGAAGGGGTAATTCGGAGGCAAGCTTTCGGAGATCGGAGAGTGTTGTTCAATCGTCGCAGATGAATGGTAATGACCAGCAATTCTCGTCGCATCATAATCATCATCTTCTTCGTCAGAACAGTAACAACAATGGTGGAAACGGTTTCCAGCAGGAATGCTTGTCGCATCGGAACCAACGGTGGGTCCATTTGCCGTTTACGATTTGCGAGGCGCTTAGGGCTTTTGGTGCTGAACTCAACTGCTTCTTGCCCTGCCATTCGTCGTGTTCCAGCGATAGGGAGAATAATAAGGAATCCAAGCCGGCGGAGAGGTCGTCGGAGAGCGAGAGTTCTTGCGGGACGGTGTTTGCGCGGTGGTTGGTGGCGGTTCAGGATGGAGACGGAAAGGGGAGGGAGATCGAGCTGGTGGTTGGAGACGAAGAAACTCGAACGGAGAAGGAAAACGGAAGCCAGAGACGGCATGTTTTTGAGGGCTTAGATTTCAAAGACGAGAATGAAGTTGTGGAGGAAGAGCAATCCAGGATCAGCATTTGCATTCCGCCAAAGAATGCTTTATTGCTAATGAGGTGCAGATCTGATCCGGTGAAAATGGCGGAACTCGCGAAACGATTCTGTGAATCTCCTGCGCCAAAAGTGGGTGAAGAAGACGAGGAAGAAGAAGATGAAGACAATGAAGCGAAAAATAGACAAAATGAAGTGAAAAAAGATGAATCTGTGTCACTGCCTGTATCTTCCACTGTGACTGTAAGTAAGGAAGAGGAAGAAGAAGAAGAAGAAGAAGAAGAAAGGAAAGTGGAGCTAATTGTGAAGCTTACTAACGAGAAAGAAATGAATGAAGAATCTGTTTCTGATGCAGAAAAAGAAAAGGAAGAAGCTAATGCGGTTTTAGAGGAAGAAGAACGAGAAGAAGAAGATAATGGAGAAGAAACCACAGAAATGGCCACAGAAAACGAAATCGATGAGCAGAAACCAGACATTACTGTGGTAAATCAGCATAATCAAGAACAACCCGTGGAAGAAGAAGATAAAATCGTTCAAGATAATCAGCAAGAAACAATGGCGATCCCAATTCAAATTCCGATTCAAACCCACTGTGAACCCGAAATGGCTCAAGATGCAGAGAAGCCGGAATCGGTCGAAGAAGACGAATCCAAGCTACCCCATGGAAGCGAACAAGACCAGAAAACAGAAGAAGACCAAAACCTGAGAGAAGAAGAAGAAGAAGAAGAAGAAGGCGAAAATGGCGAAAACCTCAGTTTACCATCATTATCAGTAGAGACAGAACCAGTTTTAGACGAAACCGAAACTGAAGTTTATTGGAATTGGGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGAAAGCGACGGATGAAGGAATCGGACCCGACAAGCAAAACGACGACGAATTGATGGGTCCAGAGGAGGACCAGTCAAAGGAGCGAGAAACTCCGCCGCCGGAGCCGGAGAGAAGAACACCAACAGAAACATCCGTTCTCCCAGATTGCTTGCTGTTAATGATGTACGAACCAAAGCTATCAATGGAGGTATCAAAGGAGACATGGGTTTGCAGCACAGACTTCATAAGGTGCGTTCCAACCAGGGAGAAGAAGCCGGCCGGCAGAGACCCACCGCCGCCTCCGCCGCCGAAGAAACGGGAAATAAAGCCGGTGGACACCACGCAGGCGGCAGTAGTACAGCCGGCGAGATGGTCGTGTTCGTTTCCAGCGGCGGCGGCTGCGGCGGCGATGATAGAACAGAAGCTAGTAAGGGCCAAGGGTTACGAGCCGTTTGTTCTTACTAGATGCAAGTCTGAGCCGATGAGATCGTCGGCTAAGCTGGCGCCAGACGCTTGCTTTTGGAAGGATCGCAAACTCGAGCCACACCGTCCGGCTACCTTCGGCATCAGCGCGGCTGAAGTTGGATTTTGA 2565 48.81 MLSGAYSRFASQTVMRKHNRVDPINPPIPSLLSLSQNLSSSSSSSSSSSSSIAFNHTVSAQNQNPTFPNGRCSPLRISVFMDSDRHFRTTSSNSTSSTAAPSSELFICFTSRFSSSSSMKISSKSILSPGRAREPSQISLSTSLSRRLKSSGSLKGGQASPMFPTGGKKRGCAFDNPEPSSPKVTCIGQVRVKTKKQGKKMRARSQKRRGNSEASFRRSESVVQSSQMNGNDQQFSSHHNHHLLRQNSNNNGGNGFQQECLSHRNQRWVHLPFTICEALRAFGAELNCFLPCHSSCSSDRENNKESKPAERSSESESSCGTVFARWLVAVQDGDGKGREIELVVGDEETRTEKENGSQRRHVFEGLDFKDENEVVEEEQSRISICIPPKNALLLMRCRSDPVKMAELAKRFCESPAPKVGEEDEEEEDEDNEAKNRQNEVKKDESVSLPVSSTVTVSKEEEEEEEEEEERKVELIVKLTNEKEMNEESVSDAEKEKEEANAVLEEEEREEEDNGEETTEMATENEIDEQKPDITVVNQHNQEQPVEEEDKIVQDNQQETMAIPIQIPIQTHCEPEMAQDAEKPESVEEDESKLPHGSEQDQKTEEDQNLREEEEEEEEGENGENLSLPSLSVETEPVLDETETEVYWNWEEEEEEEEEEEEEEEEKATDEGIGPDKQNDDELMGPEEDQSKERETPPPEPERRTPTETSVLPDCLLLMMYEPKLSMEVSKETWVCSTDFIRCVPTREKKPAGRDPPPPPPPKKREIKPVDTTQAAVVQPARWSCSFPAAAAAAAMIEQKLVRAKGYEPFVLTRCKSEPMRSSAKLAPDACFWKDRKLEPHRPATFGISAAEVGF 854
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9910689 9913699 + CaPI482276_05g010850.1 Cam05g1085 126489

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam05g1085 854 MobiDBLite consensus disorder prediction 746 769 - -
Cam05g1085 854 MobiDBLite consensus disorder prediction 295 315 - -
Cam05g1085 854 MobiDBLite consensus disorder prediction 470 501 - -
Cam05g1085 854 MobiDBLite consensus disorder prediction 669 701 - -
Cam05g1085 854 MobiDBLite consensus disorder prediction 575 606 - -
Cam05g1085 854 MobiDBLite consensus disorder prediction 120 158 - -
Cam05g1085 854 Coils Coil 646 670 - -
Cam05g1085 854 PANTHER CHLOROPLAST PROTEIN HCF243-RELATED 595 834 - -
Cam05g1085 854 MobiDBLite consensus disorder prediction 216 258 - -
Cam05g1085 854 MobiDBLite consensus disorder prediction 502 522 - -
Cam05g1085 854 Coils Coil 457 516 - -
Cam05g1085 854 MobiDBLite consensus disorder prediction 120 258 - -
Cam05g1085 854 MobiDBLite consensus disorder prediction 415 710 - -
Cam05g1085 854 MobiDBLite consensus disorder prediction 298 312 - -
Cam05g1085 854 MobiDBLite consensus disorder prediction 607 622 - -
Cam05g1085 854 MobiDBLite consensus disorder prediction 637 668 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam05g1085 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam11g1565 Cam-Chr11:28444079 Cam05g1085 Cam-Chr5:9910689 3.30E-06 dispersed
Cam05g1085 Cam-Chr5:9910689 Cam10g2009 Cam-Chr10:33962541 3.90E-09 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g160 . . . Bda09g00533 . . . . Cmo16g00440 Cmo04g00591 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda05g00777 . . Bpe01g00452 Bma07g01161 . . . . Cma04g00557 Cma16g00408 Car04g00527 . . Cpe01g00500 . . . . . . . Cla05g00994 Cam05g1085 Cec05g1093 Cco05g1087 Clacu05g1079 Cmu05g1029 Cre05g1103 . . Chy06g01170 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008790 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 0 34