Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam05g1089 ATGCGATTGTCGTCGGAATCAGTTTCGTCGTCATTGAAGCAGAGTGGGAATCGGTCTGGGTCTAGGCTTAAGAAGAAGCACAAGAGGCTTGATGCCATATGCGAGAAAGAGTATAGTAGAAACCATGGCGATGTGAATGAGAATGATAGTGGGTTGGGGACTGGGGAGGCTGACCTTGGGCTTCGACGGAGCAGCCGTGTTCGTCGGGCCCCAGTCTTGCTTGATGCTTCCCCTATGCCAAGGAAGAAGCGGCGGATGGTTCATGGGAATGGAACTTTGGGTGTTAAAACGAGTGCTAACACTCTGCCGCAGTTGAGAGATGATTTGAATGATGAGGCACAGGGGAATTGGAGATCGAGGTTGAGATCAAGGAACCGAAATTTGGGGATTAGAGTGGACAAAGGTGTTCGGGCTAGCAGGAAAAGGAAACTTTTTGATGAAATTATTAATGTGGAAGTAAGAAGTAGTGTAATGAGGATGGATTTGGATGAGGCAAAAGGAAAAATGGAATACGGGGAATCTATGGTTGGAAGGTCTAACAGATTGACGAGGAGGTTTGGAGTGACGAATGATCCAATTAAAACAGAAAAGGAGGTGAAGTCTCCTCAAATTAAGGATGATTGTTACAGGGAAGACATTTTGGAAATCAATAATGAAGATACGGAGGAGGAAGAAGAAGAAGAAGGAGAAGGAGAAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGTGGTGGTGGTGGTGGAGGGCAAAGAAGCCACGACTGCTAACAATGAGAGAGGGGAGGGTGTTTTGCCTTTGGAAAATGAAATGGATGATGAAAATGTGAAGGCAGTGGATGATGCTGTTACCCAGGTTGTTGAAAAATTGGACAAAGAAACTTTGAGTTCTTTGCACGCAGATGAGGCTTGTAGTGGTGATCATAATGAAGAACCAGCCAATGTGGTGGAGAATGCAAAAAATGGTGAGATACAGCTAGAAGAATTAACACAGCTAAATGAAGGTGTGAATGAAATTCATGATGTAGAAGCTGCTGTAGTTTCAACAAATGAAGTGGTAGGTGGAAGGTCTTGCAACGAGAAAGCTGTTGATTTGGGCAAGTTTGCTGAAAAATCTAGGCAAGATGGTGTTGATTTAAATTTAAAGAAGTTTGCAGACAGTTCCACAGGTATGTTGGGTAAGGCTCGCATTAAAGAGGGCAGAAGGTGTGGATTGTGTGGAGGAGGAATTGATGGTAAACCTCCCAAGAAGTTGGTTCAAGATTCTGGTGAGAGTGAAAATGAAACATGTAGTGGCTCTTCAGCTTCAGAGGAACCAAATTATGACAAGTGGGATGGTTTTGGCGATGAACCTGGATGGCTTGGACGCCTCTTAGGTCCTATTAATGATCGTTATGGCATTGCTGGTATATGGGTCCATCAACACTGCGCAGTTTGGAGCCCCGAGGTTTATTTTGCTGGATTGGGATGCTTGAAAAATGTAAGGGCTGCTCTTTGCAGGGGAAGAGCATTAAAATGCACTCGGTGTGGGAGACCTGGAGCAACCATCGGATGTCGTGTTGATCGATGCCCAAAAACTTACCACTTGCCTTGTGCACGTGCTAATGGTTGCATATTTGATCACCGCAAATTTCTCATAGCTTGCACAGATCATCGCCACATCTTCCAACCTCACGGTAATCAATATTTAGCTCGTATAAAGAGATTAAAGGCCAAGAAAATGAAATTGGAAATAAAAAAGCAATCAAATGACGCTTGGCGAAGGGATATTGAGGCTGAAGAAAAGTGGCTGGAGAACTGTGGGGAAGACGAAGAGTTTTTGAAAAGAGAGAGTAAGAGACTTCATCGAGATTTGGTAAGAATTGCACCTGTATATATTGGTGGGTCAAACTCAGAAGGAGAGAACTTGTTTCATGGTTGGGAGTCAGTTGCTGGGCTTCAAGGTGTCATCCAATGTATGAAAGAAGTAGTATTCTTACCACTTTTGTATCCTGAGCTTTTTGATCGCTTTGGGATCACACCTCCTAGAGGTGTTCTTTTGCATGGATATCCTGGAACTGGTAAAACACATGTTGTTCGAGCACTGATTGGTTCTTGTGCTCGTGGAGATAAACGGATAGCATATTTTGCTCGTAAAGGAGCCGATTGCTTAGGGAAATATGTTGGTGATGCAGAACGTCAGTTAAGACTTCTATTTCAAGTTGCAGAGAAATGCCAACCTTCTATTATATTTTTTGATGAGATAGATGGATTGGCACCTTGTCGTACAAGGCAGCAAGATCAAACGCATAATTCGGTTGTGTCTACATTGCTTGCTCTATTAGATGGTCTAAAATCTCGGGGGTCTGTTGTAGTTATTGGTGCCACAAACCGCCCTGAGGCAGTTGATCCAGCTTTAAGGAGGCCTGGGAGATTTGACCGGGAGATTTATTTTCCTTTGCCATCGGTTGAAGATAGGGCTGCTATTCTCTCCCTTCACACTCAAAGGTGGCCAAAGCCAGTTGATGGACCCTTGCTCCAGTGGATTGCTAGAAAAACTGCAGGCTTTGCTGGTGCTGATCTTCAGGCTCTCTGTACCCAAGCAGCCATGAGTGCTTTGAAAAGAAATTTTCCTCTTAAAGAAGTCCTGTCAGCTTCTGGGGAACAAGTTTCGAGAGATAACCACCCTCCTCTTCCGTCCATTTTAGTGGAGGAGCGAGATTGGTTAGAAGCTTTATTATATTCTCCACCTCCATGCTCACGTAGAGAAGCAGGGATGGCTGCTAATGATGTGGCATCTTCTCCTCTTCCCTTCCATCTCATTCCTTGTCTGCTTCAACCACTGTCAACTTTACTTGTTTCCCTTTATCTCGATGAACGCATCTGCTTGCCAACTAATCTTTTCAAAGCTGCAACTTTAATTAAAAGTGTCATCGTTAGTGCTTTGGATGGAAGGAAAATTGTCACTAGTTGCTGGTGGTCGCATGTTCATGATTTTGTTCAGGATGCTGATATTGCAAATGAGATGGAGGTAAAGCTGCAGGGTTCTGGAGTGTTACTTGAGGATTCTACTTTTGGTGGTTCTGGTGTTCTCAACAACACAAGCAGTGAAGGTTCCAAGTTTGAAAATGTAGGTCATCATGGTGGCCCACCCTCTACCGTGGTAGAGCACACACCATTCACCTGTGGAAATAAGTCTGGCTTTCGAATTTTGCTTGCTGGGAATCCCAGATCTGGACCAAGGCATCTTGCCTCTTGTCTTCTTCACTGTTATATTCAACATGTTGAAATTCGAAAGGTTGATATAGCTACAATTTCACAAGAAGGTCATGGTGATTTGGTGCAAGGCATATCACAAATATTGTTGAATTGCTCTAGCATGGGGTCGTGTCTGGTGTTCATGCCAAGAATTGACTTGTGGGCTATTGAGACACAAAGTCAAACATCTGAGGAGTGTGATTTTTATCTGAATGAGGATCAGTATCTTGAGGATGGAAATATTGTCAAAGACGCCCACCTTGGTGGAAGGGAAAACCATGGTTATTCAGACCAAAGCAAATCAACTAAGAGGACTGGACTTCAAGACGATTCTCTGTCTAGTGCTTCATATGCTTGGAGTTCATTTGTTGAGCAAGTTGAATCGCTATCTACACCCTTGATGATTTTGGCCACATCAGAAGTTCCATTTTTGCTGCTTCCACAAGAGATAAGGCAGTTCTTCAGGAATGACTTGTCAATTTGTCGGCCAACTACTTCGGAGCATTCGGTACCTAGGTTCTCTGTCCAGATTGATGGAGTTTTCGACCATGACATGGTAATCAATCATTCTGCTGCAGAATTATCAAGGGACATAGTGAAACTGCTTGTTCATTTGATTCACCAAAAGTCTCACACCAAAACATCCGCATGCACAAAGAACCAAGTTTCTGTAATCCAAGGTGAGAGTAATGCTGCAAATCAGCAAACAGATAAAGGAACTGCCAGCGAGCACAATGGAGAAAAGAAGTCTCCTGATGTGTCTTCTGTTAGAATTGCACCACTACCTGGCAGTAAAACCATGAGAGTGAAATCAAACTTGATTTCAGTAATATCTACTTTTGGCTATCAAATTCTGCGATACCCCCATTTCGCTGAGCTTTGTTGGGTGACATCAAAGTTGAAAGAAGGCCCCTACGCAGACGTTAGTGGACCCTGGAAGGGATGGCCATTCAATTCTTGTATTATTCGCCCCATGAGCACATTGGAGAAGGTAGCATCAAGCAGCTTGAGTAATGGAAAATCTAAAGAAATTTCGGGTTTGGTAAGAGGCTTGATTGCTGTTGGTTTATCAGCAATCAGAGGTGCCTACACATCCTTAAGGAAAGTCTCTTTTGATGTGCGATTGGTACTTGAACTCCTAGTTGAACAGATAAATGCAAAAATTAATTCCGGGAAAGACCAGTATCAATATTTTCGCCTTCTATCACAAGTTGCGTATCTGGAAGATGTAGTTAATAGCTGGGCCTTCACTCTGCAAAGCTTAGAACATGACTCGAGAACAACGGAAATGTCAAAGAATCACACTTCTGGTGGTAATGAGATTCAGTGTGAGAAAAACGAACCCATTATATCCAACAAAGGCTCTCTTACAAATGAAATTCCAGAAGTCAGTTGTCAGGAACCTGCTGTTGAGGAGGAAGTTGTAGCCATTGATTCCTTGGTAGATGGAGATTTGAATCATTCTAATTCCAAGGATACTACATTCGTATCAGGACATGGAGAGAGGAATTTTGGCATAAAAAATTCAGTCTCTAACGAGTCCCATGACAATGCTGCTGCTGTTGACCAATTAGCTGAAAATATTCCATTGAAGCACAATGAGACAACAGTAGTTGCACCGGACAATTTGGACAATGATAGAAACGGCAAATCGGTTAAAGCACCATTAAATTTGGGAGCAGAATCAATAGTCAATTTGGAACATAATCATCCAAATTCAAGTGAGTTATGTGGTGATGAAATGCCGAGCTGCACAAAACCCTGCGGCAACAGTAATGAAGGTTGTTCCGCCTTAGAAAATGGTTGCAAACGTGACAATAGTAAGCCCGACTCAAATGACTGTGAAGTGAATGCTCACTCCTCTCTGAGCAGAACTGGCCTCTCTACCAACTCTGCACTAGTATGCTCTATTCGGTGCTGCACTGGTTGTTTAAACGTCCTCTACAGCGTGACAAAAACTATTATTCGCAAGGAATTGGGATCAAATCGAAATAATTGGACTGTAGAGGATGTTCATGATAACGTTGTGGCACTTTCAGTTGACCTTCTTGCAGCAGTAAGACGGGCATTTCTTGATGGAAACGACACTCGTGTATTTGACAATAGACAAATGGGAGGAAATGACAGGTTTAAATCTTCGGACTCGAGAAGTTGTGATTGCAAAAGTTCAAAAGACATGGTATTTAAGGGAGTGGAATGTATTTGTCACTGTGAAAACGAAAGTTTGAGTGAAAAAGAAAAGGCCTCTCCTTATTCTGAAATGGGGATTGACCCCAACTTTATATTCAGAGATGGTGTATTGGTTAGTGTAGATCCCAAAAAGAATGCTTCGTTTCATTGTAAATTGGAGACTTTGTGCCTCTGTTCTCTTACAGAGTTGATAGTAATGGCAAATAAGCCTTTAAATTGA 5661 43.0 MRLSSESVSSSLKQSGNRSGSRLKKKHKRLDAICEKEYSRNHGDVNENDSGLGTGEADLGLRRSSRVRRAPVLLDASPMPRKKRRMVHGNGTLGVKTSANTLPQLRDDLNDEAQGNWRSRLRSRNRNLGIRVDKGVRASRKRKLFDEIINVEVRSSVMRMDLDEAKGKMEYGESMVGRSNRLTRRFGVTNDPIKTEKEVKSPQIKDDCYREDILEINNEDTEEEEEEEGEGEEEEEEEEEEEEEEEEEVVVVVEGKEATTANNERGEGVLPLENEMDDENVKAVDDAVTQVVEKLDKETLSSLHADEACSGDHNEEPANVVENAKNGEIQLEELTQLNEGVNEIHDVEAAVVSTNEVVGGRSCNEKAVDLGKFAEKSRQDGVDLNLKKFADSSTGMLGKARIKEGRRCGLCGGGIDGKPPKKLVQDSGESENETCSGSSASEEPNYDKWDGFGDEPGWLGRLLGPINDRYGIAGIWVHQHCAVWSPEVYFAGLGCLKNVRAALCRGRALKCTRCGRPGATIGCRVDRCPKTYHLPCARANGCIFDHRKFLIACTDHRHIFQPHGNQYLARIKRLKAKKMKLEIKKQSNDAWRRDIEAEEKWLENCGEDEEFLKRESKRLHRDLVRIAPVYIGGSNSEGENLFHGWESVAGLQGVIQCMKEVVFLPLLYPELFDRFGITPPRGVLLHGYPGTGKTHVVRALIGSCARGDKRIAYFARKGADCLGKYVGDAERQLRLLFQVAEKCQPSIIFFDEIDGLAPCRTRQQDQTHNSVVSTLLALLDGLKSRGSVVVIGATNRPEAVDPALRRPGRFDREIYFPLPSVEDRAAILSLHTQRWPKPVDGPLLQWIARKTAGFAGADLQALCTQAAMSALKRNFPLKEVLSASGEQVSRDNHPPLPSILVEERDWLEALLYSPPPCSRREAGMAANDVASSPLPFHLIPCLLQPLSTLLVSLYLDERICLPTNLFKAATLIKSVIVSALDGRKIVTSCWWSHVHDFVQDADIANEMEVKLQGSGVLLEDSTFGGSGVLNNTSSEGSKFENVGHHGGPPSTVVEHTPFTCGNKSGFRILLAGNPRSGPRHLASCLLHCYIQHVEIRKVDIATISQEGHGDLVQGISQILLNCSSMGSCLVFMPRIDLWAIETQSQTSEECDFYLNEDQYLEDGNIVKDAHLGGRENHGYSDQSKSTKRTGLQDDSLSSASYAWSSFVEQVESLSTPLMILATSEVPFLLLPQEIRQFFRNDLSICRPTTSEHSVPRFSVQIDGVFDHDMVINHSAAELSRDIVKLLVHLIHQKSHTKTSACTKNQVSVIQGESNAANQQTDKGTASEHNGEKKSPDVSSVRIAPLPGSKTMRVKSNLISVISTFGYQILRYPHFAELCWVTSKLKEGPYADVSGPWKGWPFNSCIIRPMSTLEKVASSSLSNGKSKEISGLVRGLIAVGLSAIRGAYTSLRKVSFDVRLVLELLVEQINAKINSGKDQYQYFRLLSQVAYLEDVVNSWAFTLQSLEHDSRTTEMSKNHTSGGNEIQCEKNEPIISNKGSLTNEIPEVSCQEPAVEEEVVAIDSLVDGDLNHSNSKDTTFVSGHGERNFGIKNSVSNESHDNAAAVDQLAENIPLKHNETTVVAPDNLDNDRNGKSVKAPLNLGAESIVNLEHNHPNSSELCGDEMPSCTKPCGNSNEGCSALENGCKRDNSKPDSNDCEVNAHSSLSRTGLSTNSALVCSIRCCTGCLNVLYSVTKTIIRKELGSNRNNWTVEDVHDNVVALSVDLLAAVRRAFLDGNDTRVFDNRQMGGNDRFKSSDSRSCDCKSSKDMVFKGVECICHCENESLSEKEKASPYSEMGIDPNFIFRDGVLVSVDPKKNASFHCKLETLCLCSLTELIVMANKPLN 1886
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9945005 9954229 - CaPI482276_05g010890.1 Cam05g1089 126493

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam05g1089 1886 FunFam P-loop containing nucleoside triphosphate hydrolases superfamily protein 403 559 - -
Cam05g1089 1886 PANTHER AAA DOMAIN-CONTAINING 42 1880 IPR045199 GO:0003682(PANTHER)|GO:0005634(PANTHER)|GO:0016887(PANTHER)|GO:0042393(PANTHER)|GO:0045944(PANTHER)
Cam05g1089 1886 MobiDBLite consensus disorder prediction 1171 1191 - -
Cam05g1089 1886 ProSitePatterns AAA-protein family signature. 788 806 IPR003960 GO:0005524(InterPro)|GO:0016887(InterPro)
Cam05g1089 1886 MobiDBLite consensus disorder prediction 429 443 - -
Cam05g1089 1886 Gene3D - 644 915 IPR027417 -
Cam05g1089 1886 FunFam p-loop containing nucleoside triphosphate hydrolase superfamily protein 819 911 - -
Cam05g1089 1886 Pfam ATPase family associated with various cellular activities (AAA) 683 818 IPR003959 GO:0005524(InterPro)|GO:0016887(InterPro)
Cam05g1089 1886 MobiDBLite consensus disorder prediction 1312 1341 - -
Cam05g1089 1886 ProSiteProfiles Extended PHD (ePHD) domain profile. 437 557 IPR034732 -
Cam05g1089 1886 Coils Coil 217 249 - -
Cam05g1089 1886 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 459 559 IPR013083 -
Cam05g1089 1886 Gene3D - 819 911 - -
Cam05g1089 1886 SMART AAA_5 679 820 IPR003593 GO:0016887(InterPro)
Cam05g1089 1886 MobiDBLite consensus disorder prediction 216 263 - -
Cam05g1089 1886 FunFam ATPase family, AAA domain-containing 2 643 825 - -
Cam05g1089 1886 MobiDBLite consensus disorder prediction 216 251 - -
Cam05g1089 1886 MobiDBLite consensus disorder prediction 420 447 - -
Cam05g1089 1886 MobiDBLite consensus disorder prediction 1 18 - -
Cam05g1089 1886 Pfam PHD-like zinc-binding domain 478 557 - -
Cam05g1089 1886 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 645 876 IPR027417 -
Cam05g1089 1886 MobiDBLite consensus disorder prediction 1 28 - -
Cam05g1089 1886 Pfam AAA+ lid domain 844 876 IPR041569 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam05g1089 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam04g0004 Cam-Chr4:190059 Cam05g1089 Cam-Chr5:9945005 4.20E-296 dispersed
Cam05g1089 Cam-Chr5:9945005 Cam10g1173 Cam-Chr10:24973741 5.70E-53 dispersed
Cam05g1089 Cam-Chr5:9945005 Cam04g0944 Cam-Chr4:23529110 1.00E-49 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g170 . . . . Bpe09g00245 . . Bma13g00940 Cmo16g00439 . . . . . . . . . . . . . . . Cla10g00660 Cam10g0656 Cec10g0680 Cco10g0652 Clacu10g0679 Cmu10g1503 Cre10g0883 . . Cone14ag1047 Cone15ag1035 . . . . . Blo10g00749 . Bda12g00871 . . . . . . . . Cma16g00407 . Car16g00371 Cpe14g00341 . . . . . . . . Cla05g00998 Cam05g1089 Cec05g1097 Cco05g1091 Clacu05g1083 Cmu05g1033 Cre05g1108 . . Chy06g01166 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002378 1 1 1 1 1 2 1 2 3 1 2 2 1 1 3 1 2 2 1 2 3 3 2 2 7 2 1 5 3 1 60