Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam05g1094 ATGAAGGGAGATGGTGGAAGAGAGTGTTTGAGATGGAGGAACTTGCTGCTGCCACTCTTGCAAATACTTTGGCTAGTGTCACTGGCTTTTCTTTCATGCACATACCATATAAGAAATGGAGTATTCAACTATTATGAGGCACCTAAGGCAGCAGATCTCAAGACAGGACTGAGCGGAGCGCTTGAAACACTTTGCGGGCAAGCGTTTGGTAGGAAGTTTCATGGGAAGATGGGGTTGTATCTTCAAGGTTCTTGCATCTCATCATTCTTTTGTTCCATCATTGTATCAGTTTTGTGGATTTACACAGAACAGATTCTAGTCTTGCTCCATCAAGAACCAGAGATTTCAAGGATATCTGCAGTGTATATGAAGTTTCTCATCCCAGGATTATTTGCATATGGCTTACTACAGAACATCCTGAGGTTTCTCCAAACACAATCTGTTGTCATGCCTTTGGTTTTCTTCTCTGCCATCCCAATGTTCATCCACATACCTATTGCATATGGTCTCGTTCATGGGACACGTCTCGGTTTCAATGGAGCTCCATTGGCTGCTTCAATCTCATTATGGATGTCATGCCTGATTTTGGCTATTTATGTACTTAAAGCAAACAAGTTTGAGAAATCTTGGAAAGGCTTCTCATTAGAAGCTTTTAGCTACAGTCTTTCAAGCTTAAAACTAGCTATTCCATCAGCAGCAATGGTGTGTTTGGAGTATTGGGCGGTTGAGGTTATGGTTTTCTTAGCCGGGTTGATGCCGAACCCGGAAACAAGTACTTCACTGATAGCAATGTGTGACAACACACAAACCATTGCCTACATGATCACTTGTGGACTCAGTGCTGCAGCAAGCACAAGGGTCTCAAATGAATTGGGAGCAGGCAATTTTGACAAAGCCAAAACTGCCATGTTTGCAACTCTCAAGCTTTCTGTCCTCCTTCCTCTGCTAGTTGTTTTGGCACTTGCATTTGGACATAACACCTGGGCTAGCTTCTTCATCAACAGCATTACAATTATGGATGAGTTTTCTTCCATGGTCCCATTTCTCGCTATCTCGATAACGCTCGACTCTGTTCAAGGCGCCATATCAGGGGTGGCTAGAGGCTATGGTTGGCAGCACTTGGCTGTATACATAAACTTGTCCACATTCTACTTTGTCGGTGTAACGATATCGATCCTTCTCGGGTTTAAGCTTAGATTATATGCTAAGGGTTTATGGATCGGGTACATCTGCGGTCTCTCGTCACAAACCAGTTGTCTTCTTTTGGTTGCTTTATCTGCAAAATGGATTAAAATGAATCAATCTGATTATGAAGTAAAAGGCCAGCCAAGGTTTATCCGTTCTATATCCTCCTCTGCTCTTCGTTCAATCGCTCAAATGGCAATGGCTTCAGTTTTGGCCCTCAATGGAGTGAAATTGGCTACGACTTCTCAAGCTTATGTGGAAAGCAAGGCTGCAATCGACACCAAGGCTCTGTTATCAGAGCTCTCCCACCAATTCTACGGCCTTAGATGGGTCTCCGGCACCGGCGGCAACATTGCGATCAAGGTTCACTACCACTCCATTCCCAAGAGACAAAAGCTAACCGCTATGTCGCCTTCTGGTGTTAAGGAGAGAATGGTACGTGAGGACACCTGCATGTTATCTTATGGTGGGTCGATCTTATATTCACCACTTCCAAAACCATTTTCCCACAAACTCCCAAACTGTTTTGATAGTGGACGTCTTTTTATGAAGATGCGCAATGCTGGAGCTGCTATGGAATCGTATCTTGTAACACAAAGGAACCATCATCAGGGTCGGATTAGGAGTATCAAAGGAATTTCAAGCAACATTTCTGTGAAGGCTGGGGATCAAGGTTTAGAAAATAAAAATGAACCATTGCCACGTTGCATAGTTCTTGATATCGAAGGGACTACTACTCCAATATCTTTTGTTACTGACGTCCTCTTTCCATATGCTCGGGATAATGTTGGAAAGCATTTGATTTTAACTTATGAAACTGCAGAAACTCAAGATGACATTAAGTTGTTGCGTTCACAAGTTGAAGAAGACTTGGAAAAAGGAGTTGCTGGAGCTGTGCCTATTCCTCCTGATAATGCTGGGAAAGAGGAAGTCATTGCAGCATTGGTTTCTAATGTTGAAGCAATGATAAAAGCTGACCGCAAGATAACTGCTTTGAAACAATTGCAAGGTCACGTATGGAGAACAGGATTTTCAGGCAATGAATTGGAGGGAGTAGTTTTTGATGACGTCCCAGAGGCTCTCGAGAGATGGCATGCTTCGGGCATTAAGGTCTACATATACTCGAGTGGCAGCAGGTTGGCACAAAGGCTTATATTTGGAAAGACTAATTATGGTGATCTAAGAAAATACCTGTCAGGATTCTTTGACACTGCTGTGGGGAACAAAAGAGAAATAAGCAGTTATGTTGAGATTTCAGAGTCTGTTGGAGTTGATACACCATCAGAGATATTGTTCATCACAGATGTCTGTCAGGAAGCTGTAGCAGCAAAAGCAGCAGGGCTGCAGGTGGCAATCTCAATCCGACCAGGAAACGGTCCACTGCCTGATAATCACGGGTTTCAGACAATCACTTCCTTCTCAGAAATCTGA 2616 43.31 MKGDGGRECLRWRNLLLPLLQILWLVSLAFLSCTYHIRNGVFNYYEAPKAADLKTGLSGALETLCGQAFGRKFHGKMGLYLQGSCISSFFCSIIVSVLWIYTEQILVLLHQEPEISRISAVYMKFLIPGLFAYGLLQNILRFLQTQSVVMPLVFFSAIPMFIHIPIAYGLVHGTRLGFNGAPLAASISLWMSCLILAIYVLKANKFEKSWKGFSLEAFSYSLSSLKLAIPSAAMVCLEYWAVEVMVFLAGLMPNPETSTSLIAMCDNTQTIAYMITCGLSAAASTRVSNELGAGNFDKAKTAMFATLKLSVLLPLLVVLALAFGHNTWASFFINSITIMDEFSSMVPFLAISITLDSVQGAISGVARGYGWQHLAVYINLSTFYFVGVTISILLGFKLRLYAKGLWIGYICGLSSQTSCLLLVALSAKWIKMNQSDYEVKGQPRFIRSISSSALRSIAQMAMASVLALNGVKLATTSQAYVESKAAIDTKALLSELSHQFYGLRWVSGTGGNIAIKVHYHSIPKRQKLTAMSPSGVKERMVREDTCMLSYGGSILYSPLPKPFSHKLPNCFDSGRLFMKMRNAGAAMESYLVTQRNHHQGRIRSIKGISSNISVKAGDQGLENKNEPLPRCIVLDIEGTTTPISFVTDVLFPYARDNVGKHLILTYETAETQDDIKLLRSQVEEDLEKGVAGAVPIPPDNAGKEEVIAALVSNVEAMIKADRKITALKQLQGHVWRTGFSGNELEGVVFDDVPEALERWHASGIKVYIYSSGSRLAQRLIFGKTNYGDLRKYLSGFFDTAVGNKREISSYVEISESVGVDTPSEILFITDVCQEAVAAKAAGLQVAISIRPGNGPLPDNHGFQTITSFSEI 871
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 10005690 10017873 + CaPI482276_05g010940.1 Cam05g1094 126498

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam05g1094 871 Gene3D - 487 588 IPR036409 -
Cam05g1094 871 FunFam Probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1 643 739 - -
Cam05g1094 871 FunFam Probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1 739 871 - -
Cam05g1094 871 SUPERFAMILY HAD-like 630 871 IPR036412 -
Cam05g1094 871 CDD HAD_EP 631 852 IPR023943 GO:0000287(InterPro)|GO:0019509(InterPro)|GO:0043874(InterPro)
Cam05g1094 871 Gene3D - 740 871 IPR023214 -
Cam05g1094 871 Pfam haloacid dehalogenase-like hydrolase 630 842 - -
Cam05g1094 871 Pfam MatE 230 390 IPR002528 GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0042910(InterPro)|GO:0055085(InterPro)
Cam05g1094 871 Pfam MatE 55 168 IPR002528 GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0042910(InterPro)|GO:0055085(InterPro)
Cam05g1094 871 Gene3D - 643 739 - -
Cam05g1094 871 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 33 - -
Cam05g1094 871 CDD MATE_eukaryotic 55 432 IPR045069 GO:0042910(InterPro)|GO:1990961(InterPro)
Cam05g1094 871 SFLD enolase-phosphatase 630 870 IPR023943 GO:0000287(InterPro)|GO:0019509(InterPro)|GO:0043874(InterPro)
Cam05g1094 871 SFLD C1.5.4: Enolase-phosphatase Like 630 870 - -
Cam05g1094 871 NCBIfam acireductone synthase 630 869 IPR023943 GO:0000287(InterPro)|GO:0019509(InterPro)|GO:0043874(InterPro)
Cam05g1094 871 NCBIfam MATE family efflux transporter 55 406 IPR002528 GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0042910(InterPro)|GO:0055085(InterPro)
Cam05g1094 871 PANTHER MULTIDRUG RESISTANCE PROTEIN 53 431 - GO:0016020(PANTHER)|GO:0022857(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam05g1094 K03327 - - csv:101221712 689.878
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam05g1094 Cam-Chr5:10005690 Cam11g1824 Cam-Chr11:30765201 1.50E-141 dispersed
Cam05g1094 Cam-Chr5:10005690 Cam05g2431 Cam-Chr5:32266624 7.90E-74 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g196 . . . . Bpe09g00238 . . Bma13g00945 Cmo16g00434 . . . . . . Cpe06g00682 . . . . . . . . . . . . . . . . Cone9ag0179 . . Lsi04g02064 Csa04g02334 Chy07g00066 . . Blo10g00758 . . . . . . . . . . Cma16g00400 . Car16g00366 . . . . . . . . . Cla05g01005 Cam05g1094 Cec05g1104 Cco05g1097 Clacu05g1090 Cmu05g1041 Cre05g1114 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002536 1 3 1 2 1 1 2 1 1 2 2 2 2 2 2 2 1 3 1 2 2 2 2 2 2 2 2 4 3 2 57