Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam05g1097 ATGGGTTGCGTTTGCTGTAAGCCCTCTGCTATTGAAGATAGCAAGGAAAGTCCAAGGGAGAGGGTGTCAAGTAAGACCTCGTCTGACCTGCGGGTGGCAAGAGTGACTTCATCATCGAGGGAAGAAGCTTTTCGTACTAAAGATCAGTATGATGGTAATGATGCGAGAGTGACATTGATTGACAAGCAGGTGAATGGGTCCGGTCGACTGCCAGGTGAGAATTTTGAGAGGAAGAGGGAGAAGATGGAGCATATGGGTGCTCAACATCCTTCAATGGGGAGAATTCCGAAGGCAGCAGAGGGAGACCACATCGCTGCAGGGTGGCCGCCGTGGCTGGCTGCAGTTGCTGGCGAGGCAATCAGAGGATGGCTACCCCGACGAGCTGATTCTTTTGAGAAATTGGATAAAATTGGCCAAGGGACTTATAGTAATGTATACAGGGCTCGTGATCTTGACCAAAAGAAAATTGTTGCTTTGAAGAAAGTAAGGTTTGACAACCTGGAACCTGAGAGCGTCCGCTTTATGGCTAGGGAAATTCACATATTGCGTAGACTTGATCATCCAAATGTAATAAAGCTGGAGGGTCTAGTTACATCTAGGATGTCTTGCAGCCTCTATCTTGTATTCGAGTACATGGAACATGACTTGGCAGGACTTGCTTCACATCCTGGTGTGAAGTTTACAGAGGCGCAGGTCAAATGTTACATGCAGCAACTTTTACGTGGACTTGATCATTGTCACAGTCATGGAGTTCTACATCGTGATATAAAGGGTTCCAACCTTTTAATTGACAATCATGGCGTCTTGAAAATTGCTGACTTTGGTCTTGCAAGTTTTTTTGATATCCATCAAAATCAGCCATTGACTAGTCGGGTTGTTACTCTTTGGTATCGACCACCTGAGCTTTTACTTGGTGCCACTTATTATGGTACAGCTGTAGATTTGTGGAGTACTGGCTGCATACTTGCTGAGTTGTATGCTGGGAAGCCCATTATGCCAGGAAGAACAGAGGTGGAACAGCTACATAAAATATTTAAACTGTGTGGCTCTCCTTCAGAGGATTATTGGAGAAAATCAAGGTTGCCACATGCAACAATATTTAAGCCCCAACAGCCCTATAGACGTTGTGTTGCAGACACATTTAAAGATTTCCCTGCACCAGCTTTAGCTCTCATTGAGACATTACTCTCTATAGATCCTGCAGATCGTGGCTCTGCTGCTCTTGCCCTTAAAAGCGAATTTTTTTCAACAAAGCCACTACCTTGTGATCCTTCAAGCTTGCCAAAGTATCCTCCAAGCAAAGAATTTGATGCCAAGATAAGGGATGAGGAAGCTAGAAGACAAGGAGCAGTAGGAAGCAAAGGACACCGGCTTGACCTGCAAAGGAAAGATAGAGAGTCTCGAGCTGTCCCTGCGCCTGATGCCAATGCTGAATTAGCCTCATCAATGCAGAAAAGACAAGGCCTGTCCAACTCAAAGAGCCGGAGTGAGAAGTTTAACCCACATCCAGAAGAAGCTTCTGGCTTTCCTATTGATCCACCTAGACCTTCACAAGGAGCAGAAAGAATGGATTCTCAGGTGCGTCATCCGAAGAAAGCCTCACATTCAGGGCCACTTGCTCAGCGGGCTGCTTGGGCAAAGGCTAGTAAGAACCCGGATGATCCTCCCAAAATCTCAACCGGGGCTGAAACTTTCGCAACTTCAGGACTAGTAGCAGCCAGAAGAAGTATGCTGGCTGAAGATTGTAGGGAAAAGTCTGATTCTTCACAAGGAGAGGTTCAAAAGCTAATTGGCAGGTTTCCCGGTTCCTTCAAAGAAACCTCAGAGTCGTCAATGCTACCGGACCAAAAGTTCTCAAATCACAGTATTGTAGGCTCACATGACAAAGAGAGGAGCAGCGCCAAAGACCCTATAGTTGTGGGTTATGGCTCAAAGGGTCATAAGATTCATTACTCTGGTCCATTATTGGTTCCTTCTGGCAACATGGACCAAATGTTGAAGGACCATGATCGCCATATCCAAGAAGCAGTAAGACGAGCTCGGCTTGACAAGGCTAAGGTACGGAAGGTTCAAGCTGATGGGAAACAGATGTCGACGAATTCATTATTCGTCTCTGGTCGTTAA 2124 46.0 MGCVCCKPSAIEDSKESPRERVSSKTSSDLRVARVTSSSREEAFRTKDQYDGNDARVTLIDKQVNGSGRLPGENFERKREKMEHMGAQHPSMGRIPKAAEGDHIAAGWPPWLAAVAGEAIRGWLPRRADSFEKLDKIGQGTYSNVYRARDLDQKKIVALKKVRFDNLEPESVRFMAREIHILRRLDHPNVIKLEGLVTSRMSCSLYLVFEYMEHDLAGLASHPGVKFTEAQVKCYMQQLLRGLDHCHSHGVLHRDIKGSNLLIDNHGVLKIADFGLASFFDIHQNQPLTSRVVTLWYRPPELLLGATYYGTAVDLWSTGCILAELYAGKPIMPGRTEVEQLHKIFKLCGSPSEDYWRKSRLPHATIFKPQQPYRRCVADTFKDFPAPALALIETLLSIDPADRGSAALALKSEFFSTKPLPCDPSSLPKYPPSKEFDAKIRDEEARRQGAVGSKGHRLDLQRKDRESRAVPAPDANAELASSMQKRQGLSNSKSRSEKFNPHPEEASGFPIDPPRPSQGAERMDSQVRHPKKASHSGPLAQRAAWAKASKNPDDPPKISTGAETFATSGLVAARRSMLAEDCREKSDSSQGEVQKLIGRFPGSFKETSESSMLPDQKFSNHSIVGSHDKERSSAKDPIVVGYGSKGHKIHYSGPLLVPSGNMDQMLKDHDRHIQEAVRRARLDKAKVRKVQADGKQMSTNSLFVSGR 707
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 10044173 10049679 - CaPI482276_05g010970.1 Cam05g1097 126501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam05g1097 707 MobiDBLite consensus disorder prediction 35 49 - -
Cam05g1097 707 MobiDBLite consensus disorder prediction 1 49 - -
Cam05g1097 707 Gene3D Phosphorylase Kinase; domain 1 118 213 - -
Cam05g1097 707 CDD STKc_CDK9_like 131 415 - -
Cam05g1097 707 ProSitePatterns Protein kinases ATP-binding region signature. 137 160 IPR017441 GO:0005524(InterPro)
Cam05g1097 707 FunFam probable serine/threonine-protein kinase At1g54610 214 455 - -
Cam05g1097 707 Gene3D Transferase(Phosphotransferase) domain 1 214 454 - -
Cam05g1097 707 MobiDBLite consensus disorder prediction 684 707 - -
Cam05g1097 707 MobiDBLite consensus disorder prediction 444 563 - -
Cam05g1097 707 MobiDBLite consensus disorder prediction 693 707 - -
Cam05g1097 707 SUPERFAMILY Protein kinase-like (PK-like) 125 423 IPR011009 -
Cam05g1097 707 PANTHER CELL DIVISION PROTEIN KINASE 130 415 IPR050108 GO:0000307(PANTHER)|GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0008353(PANTHER)|GO:0032968(PANTHER)|GO:0070816(PANTHER)
Cam05g1097 707 ProSiteProfiles Protein kinase domain profile. 131 415 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam05g1097 707 ProSitePatterns Serine/Threonine protein kinases active-site signature. 251 263 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam05g1097 707 MobiDBLite consensus disorder prediction 600 635 - -
Cam05g1097 707 MobiDBLite consensus disorder prediction 12 27 - -
Cam05g1097 707 FunFam probable serine/threonine-protein kinase At1g54610 118 213 - -
Cam05g1097 707 Pfam Protein kinase domain 131 415 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam05g1097 707 MobiDBLite consensus disorder prediction 604 621 - -
Cam05g1097 707 SMART serkin_6 131 415 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam05g1097 707 MobiDBLite consensus disorder prediction 444 471 - -
Cam05g1097 707 MobiDBLite consensus disorder prediction 480 496 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g1824 Cam-Chr2:31298571 Cam05g1097 Cam-Chr5:10044173 1.90E-175 dispersed
Cam02g1825 Cam-Chr2:31306917 Cam05g1097 Cam-Chr5:10044173 5.50E-212 dispersed
Cam04g1236 Cam-Chr4:26386648 Cam05g1097 Cam-Chr5:10044173 1.50E-160 dispersed
Cam05g0674 Cam-Chr5:5892244 Cam05g1097 Cam-Chr5:10044173 3.00E-183 dispersed
Cam05g1097 Cam-Chr5:10044173 Cam11g0058 Cam-Chr11:2172420 1.60E-194 dispersed
Cam05g1097 Cam-Chr5:10044173 Cam02g1691 Cam-Chr2:29917626 1.90E-171 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85185 PF00069 Pkinase 3.20E-69 CL0016 Cam PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam05g1097 - - - 0.0