Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam05g1114 ATGGGGAAAGGACCATTTTCTTTTCGCCGGAGCAGTAGTCGCCGCCGCCCTAAGAAGGCGGTTCAGTCGTCACCGTCCTTATCGCCACAGCCACCTCCGCAGATTAGCACCAGTTCTCCTCCCATTAACAATAATGGGAATGGATTGGTTGGTGGTGGGGGTGGTGGGGTGGTGGGAAAAGTGAAGAAGAAGGCCGGAGGAGCTAGGCTGTGGATGCGTCTCGACAGGTGGGGACAATCGGAGCTTTTAGAGTGGGACAAGAATGCTATAATCCGACGTGCTGCAATTCCGGCTAGGGATTTGAGGATTCTTGGTCCTGTTTTCTCACACTCATCTAGCATACTCGCCAGGGAAAAGGCCATGGTCGTTAATTTAGAGTTCATAAAAGCTATAGTTACTGCTGAAGAAGTCCTATTACTTGACCCTCTTCGCCAAGAGGTTATTCCATTTGTAGATCAGCTAAGGAAGCTACTTGCTAAGACGGGTTCATCTCAACTTGAAAATGATGGGAATGTTTCGAGAGGAGGAAAGTGGTTGCCAGTTTCAGAAGCTGCTGAAGGTGAGCAGTATGAGCTCCCGTTTGAGTTTCAGGTTCTGGAAAATGCTTTGGAGGTTGTGTGCATGTACTTGGATTCCAGTGTGGCAGACCTTGAGCGAGACGCTTATCCAGTTCTGGATGAACTGGCTAGGAATGTCAGCACCAAGAATCTAGAACGTGTGAGGAGTTTGAAAAGTAATCTTACCCGTATTCTTGCACGCGTTCAGAAGGTGCGGGACGAGATAGAACATCTATTAGATGATAATGAAGATATGGCACAACTATATTTGACAAGGAAATGGATGCAGAATCAACAATTTGATGCTTTGCCGGGAGGTGTGGCTTCCAACAGCACAACTGCTATCGTTCCCCATCTTCGTCGACTTAGTTCCACCAGGAGTGGCAGTGTGGTGACCAGCAACCTTTTGGATGATAATGACATAGAGGACCTGGAGATGTTGCTCGAGGCATACTTTATGCAGTTGGATGGGACTCGTAACAGGATATTATCGGTTAGGGAATACATCGACGACACCGAGGATTATGTTAATATTCAACTTGACAACCAAAGAAATGAACTCATTCAGTTTCAGTTAACCCTGACAATTGCTTCATTTGCCATAGCGGTTGAAACCTTAATCGCCGGGTTGTTTGGTATGAACATCCCTTGTACATTGTACGAGACGGATGGGGTGTTTGGGTACTTTGTCGGAGGTACTTCAGCAGGATGTTTATTGCTTTTCCTGCTTATTTTTGGGTACGCAAGATGGAAGAAGCTTCTTGGTTCATGA 1329 46.58 MGKGPFSFRRSSSRRRPKKAVQSSPSLSPQPPPQISTSSPPINNNGNGLVGGGGGGVVGKVKKKAGGARLWMRLDRWGQSELLEWDKNAIIRRAAIPARDLRILGPVFSHSSSILAREKAMVVNLEFIKAIVTAEEVLLLDPLRQEVIPFVDQLRKLLAKTGSSQLENDGNVSRGGKWLPVSEAAEGEQYELPFEFQVLENALEVVCMYLDSSVADLERDAYPVLDELARNVSTKNLERVRSLKSNLTRILARVQKVRDEIEHLLDDNEDMAQLYLTRKWMQNQQFDALPGGVASNSTTAIVPHLRRLSSTRSGSVVTSNLLDDNDIEDLEMLLEAYFMQLDGTRNRILSVREYIDDTEDYVNIQLDNQRNELIQFQLTLTIASFAIAVETLIAGLFGMNIPCTLYETDGVFGYFVGGTSAGCLLLFLLIFGYARWKKLLGS 442
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 10262101 10268024 - CaPI482276_05g011140.1 Cam05g1114 126518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam05g1114 442 Gene3D Magnesium transport protein CorA, transmembrane region 145 373 - -
Cam05g1114 442 Gene3D Magnesium transport protein CorA, transmembrane region 380 440 - -
Cam05g1114 442 Gene3D - 59 142 - -
Cam05g1114 442 CDD Mrs2_Mfm1p-like 71 439 IPR039204 -
Cam05g1114 442 MobiDBLite consensus disorder prediction 1 55 - -
Cam05g1114 442 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 59 439 IPR039204 GO:0015095(PANTHER)|GO:0015693(PANTHER)
Cam05g1114 442 Pfam CorA-like Mg2+ transporter protein 328 433 IPR002523 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)|GO:0055085(InterPro)
Cam05g1114 442 FunFam Magnesium transporter MRS2-1 59 142 - -
Cam05g1114 442 Coils Coil 240 274 - -
Cam05g1114 442 Pfam Magnesium transporter MRS2-like 84 286 - -
Cam05g1114 442 SUPERFAMILY Magnesium transport protein CorA, transmembrane region 378 429 IPR045863 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g0026 Cam-Chr2:1404830 Cam05g1114 Cam-Chr5:10262101 4.40E-214 dispersed
Cam05g1114 Cam-Chr5:10262101 Cam06g0667 Cam-Chr6:8992920 5.40E-87 dispersed
Cam05g1114 Cam-Chr5:10262101 Cam07g0060 Cam-Chr7:1741241 1.70E-85 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam05g1114 K16075 - csv:101203496 731.865