Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam05g1116 ATGAAGTCGATCAAATCCTCCGGCTTAAACATGGAGCAACCCATTCGTGGATCCTTTGATGAAGGCCAATACAGAAGCCGAAGCATTCACTCCGACGCCGCTAGAATCGATTTGGATAAGAAGGTGAAGAAGGTTCGAGGAAGAGGCAAAACGAAGAACTCGTGGAAACAAGATAGCGAGAAGAGTTTTAAAGAAAAACGCACAATCGAGAGTCTATTTGAGAAGGATTTTGTGGAGAGGCTTCGAAACAGAATCCAAATCCAGACAAGATTTCATTTCGAAGATACTGAAAAGTACTTACCCAGTGATGAATTGGGAACAATTATTCGAAGTGACCAAGCAAGGATGGCGGAGACAATATGGGAAGAAAGCGTAATTCGCCTGGCGCCGCTGTATAGAGCGGCGCTAATGGGCGAATGGGAGATAGCAGAAGCCATTTTCAAGCAAGATTCTAGAGCAATCACGTCGGAGATCAGCCTCTTGAACGAGACTGCTCTCCATGTAGCGGTCGGCACAGGCGGCAATTTGGGATTTGTTGAGAAGCTGGTGAGCTTAATGTGGAAACGATCACTGCCGCTTACACAGGAGGATTTATATGGGAATACTGCGCTTGCTGTTGCCGCCATTGTTGGAAATGTGAAAGCTGCAGAAATCTTGGTCGGGAAAGATGAGATGTTGCCGGCGATGAGAAACCGGGTGAATTACTCGCCGTTGCATCTGGCGGCGAAATATGGGCACAGAGATATGGTTTTGTATCTTCTAGGCGTAACAAAGGACGAAGGGATATTCACCGGTCAATCTGGTGCTAGGCTTCTCAATCTTCTCATTTCATTTGATATCTATGATGTAGCTCTTGATATATTAAATCAACAGCCGAAGTTGGCGGTGGAACAAGATCAATACGGATTCACAGCTCTACAAATGTTGGCTGAAAAACCAGATGTGTTTGAGAGTGGAACAACTCAGCTTGGGCGTTGCCGACGCATCCTTCATCCTCGCTCCCGTGTTGCTGTGGAAGTCTTCGATGCTTCTCATCATCTGCCCATGCAACAAAGTGATATCGAAAGTCCTCCTGAAATCTCAAACAATGCAGTGGCAGGAGTGTTGATGAAGAATGTTTATAGGAAAAAGCATAATAAGAAGCATGAGGAAGCATGTAAGTTGGTAAAACGGTTATGCGAAGAAGCAGTAAACGTGGGGGGGAAAAAGTGCGCCAAATTGTTTTCAACTTCAATACTTTCAGCTGCAAGAATGGGGAGTGTTGAAGTTGCCATAGCAATTGTAAGAGTTTATCCTTATTCAATTTGGTTCCGCGATAGCCGTGAATGCAATATTTTTCAGCTCGCTGTTCTTCATCGTCAACACAAGATTTATAATCTTATATATCAAATGACTTCACACAAGTATTTTGCAGCAGCTTTTCTTGACAATAATGATAACAACATCTTGCATTTAGCTGGTGAGCTTGTTCCATCTCATTCAATCTCTGGTGCAGCTTTGCAATTGCAACGAGAATTGCAGTGGTTTAAGGAAGTTGAAAGATTAGTGCTACCATCTTACAAAAGCATGACAAACAAAGATAACAAAACACCAAGAATGGTATTTAGTGAAGAACATGAAGAGCTAGTTCACCAAGGTGAAAAATGGATGAAGAACACTGCTTCATCGTACACCGTTGTTGCGGCGCTCATTGCGACGGTTGCATTTGCAGCAATTTTCACTGTACCTGGTGGCAACGACAATGATCAAGGCATCCCTATTCTCATTAACCACAAATTCTTCATGGTTTTTGTAGCAGCAGATGCATTAGCATTAATCACTTCATCTGCTTCAGTAATAATGTTTTTAGGAATACTCACTTCACGCTACGCAGAAGATGATTTTCTCAAGGTGTTACCTTCGAGATTGATTATCGGTCTCGTCTCGTTGTTCATCTCTATATTATCCATGGTAGCAGCCTTCAGTGCATCCCTTTGCCTAGTTCTTGTTCATCAACTGAGATGGGTGTGGGCTCCAATGATAGTATTTGCCTTGGTTCCTGTTATCTTATTTGCCATGTTGCAATTTCCACTTTTGGTGCAAATGACATCTTCCACATATGGGCCTAGCATTTTTGGTTTGCAAAGTACAATTCTAAGGAAGACTTTGGTGATGGACTCCCTCCTGGTTCCAAACTATATGATTTGTGTTAGAATAATTTTGCACATAGTTGAGGATGTTTGTAGATGGTTCTCTCCTCTCATTGGTTCCTTCAAGGCGAATGCAAATGTGATTGTCGTTATGAACCTATTCCCCACTTTTCGGCTCTCATTATCTCGCCGCCGCTCCTTCTCTTTGGTTGCTCTAATTCGAAGCTTGCGAAAGAGCTTCAGAGTGGTTTTAGATCCGTGTTCTGTGATCGACGTTGAGAGAGAGAATGGCTTCTCGTTTCTGGACCCAGGTATTGCGTTCAGTCTAAACGGTGGTGGCAGTGGTTCTGATTCTGAAGCGGAGGAGAGTGACTATGGTGAAGAGCTTGACGACGTACAGGTTGATCCTGGCTCCCAACCGAACAGAAGCAGATATCTGCAAGGGAATGCCAGTGACAGCGAAGATTCTGAGGATAAGAAGCGTACTGTCAGGTCGGCTAAAGATAAGCGTTTTGAGGAGATGTCTGCTACTGTGGATCAGATGAAAAATGCAATGAAGATCAATGACTGGGTTAGCCTGCAGGAGAGTTTTGATAAAATAAATAAGCAGCTTGAGAAAGTCATGCGTGTTACTGAGTCTGAGAAGGTGCCGACTCTTTATATTAAAGCACTTGTGATGCTAGAGGACTTCCTAAATGAAGCCATGGCCAATAAGGAAGCAAAGAAGAAAATGAGTACTAGCAATTCTAAGGCCTTAAATTCAATGAAACAGAAGCTAAAGAAGAACAATAAGCAATATGAAGAGGTAATTGCCAAGTATAGGGAGAATCCTGAGATTGAGGAAGAAAAGGCTGATGAGCTGGAGGAGGAGGAGGAGGATGATGATGAATCTGAATATGAGGATGATCCTTCTAAAATCATGTCAGATTCAGAGCCAGAGCCAGATGTAGATGAAGAAGAAGATCTAGATGATCCAAGTCAAAACTGGGAGAAGAAGAAGAGCAAAAAAAATAAGCTCATGGATAAGCAGTTTATGAAGGATCCTAGTGAGATCACATGGGACACTGTGAACAAGAAATTTAAGGAGGTTGTGGCTGCTCGGGGTAGGAAGGGAACTGGAAGATTTGAGCAGGTTGAACAGCTTACATTCTTAACAAAAGTTGCTAAGACCCCTGCACAAAAGCTTGAGATTTTGTTCAGTGTTGTATCTGCTCAATTTGATGTTAATCCAGGTCTCAGTGGGCATATGCCTATCAGTGTGTGGAAGAAGTGTGTGCAGAACATGCTTTCTATAATTGACATTCTTGTGCAGAATTCCAACATTGTGGTGGATGATATGGTTGAACCTGATGAGAATGAAAGCCAGAAGCCAGCAGACTATAAGGGAACAATACGTGTTTGGGGAAACTTGGTTGCTTTTGTTGAGAGGATTGACACTGAGTTTTTTAAGAGTTTGCAGTGTATTGACCCACATACACGTGAGTATGTTGAAAGACTCAGAGATGAGCCAATGTTTATGGTTCTTGCTCAGAATGTCCAAGCATATTTGGAACGAGTTGGGGATTACAAAGCAGCTTCGAAAGTTGCCCTGAGGCGTGTTGAACTGATCTATTACAAACCACAAGAGGTTTATGATGCCATGAGAAAGCTTGCAGAGCTGTCAGAAGATGGAGATAGTGGAGATGCAAGTGAGGAGGCTAAAGTGGTTGAAGAGAGCAGGGGCCCTGCTTCATTTATTGTCACTCCAGAGCTTGTCCCTCGTAAACCCACCTTTCCAGAGAGTAGTAGGGCTTTTATGGACATTCTGGTAACCCTTATCTACCAATATGGAGATGAGCGCACTAAAGCACGAGCTATGCTCTGCGATATTTATCACCATGCTCTCTTGGATGAATTTTATATTTCTCGTGACTTGTTACTGATGAGTCACTTACAGGATAGTGTTCAACATTTGGACATTTCAACGCAGATCCTTTTCAATAGGGCAATGGCTCAACTTGGTTTATGTGGCTTTCGGGTTGGCCTGATTAGTGAAGGACATGGCTGTCTTTCAGAATTATATTCTGGTGGAAGGGTGAAGGAATTGCTTGCTCAAGGTGTCTCACAAAGCCGATACCATGAAAAGACTCCAGAACAGGAAAGGCTTGAAAGAAGAAGGCAGATGCCATACCACATGCACATAAATCTTGAGCTCCTGGAGGCTGTGCATTTAATATGTGCTATGCTGCTGGAAGTACCCAACATGGCAGGCAATGTTCATGATGCCAAGCGCAAGGTTATTAGTAAGAACTTTAGACGGTTACTTGAGGTGAGTGAGAGACAAACATTTACGGGTCCTCCTGAGAATGTCAGAGATCATGTAATGGCTGCTACTCGGGCCCTTCGCAAGGGTGATTTCCAGAAGGCTTTTGATGTCATTGCATCTCTAGATGTATGGAAGCTACTTAGGAATCGTGACGAAGTGCTGGAAATGGTAAAAGGGAAAATCAAGGAGGAGGCTTTGAGGACTTACCTTCTCACATACTCTTCGTCCTACGATTCTCTGAGTTCGGACCAACTCACCCAAATGTTCGACCTTGCAGAGGGTCAAACACACAGCATTGTGAGCAAGATGATGATCAACGAGGAGCTCCATGCAAGTTGGGATCAGCCAAGCGGGTGTGTCATCTTCCACGATGTTACACACACCCGATTACAAGGCCTGGCATTCCAACTGGCTGATAAGTTGTCAATCCTTGCTGAAAGTAACGAGAGAGCAGTTGAGGCAAGAATAGGAGGAGGATTAGATTTACCAATGAGGCGAAGAGACAACCAAGAATATGCTGCTGGAGGGGCTGTAGGAGGGAGTAGCAGGTGGCCAGATAACATGTCGTATAATCAAGGAAGGCATGGTGGTCCTAGTTCGCGTGCAGGATATAGCAGCGGTGGGCGAGGCCAAGGTGGGGCTGGTGGATATTCTAGAGACCGGATGGGTCAGTCTCGAGGAGGCAATGCAGGATATCAAAGCACTCGTTATCAAGACGCCGCATATGGATCAGGGAGGACTGCTTATCAGTCGGGTTCTGCCCGAGGATCCCAGATGGATGCTTCAGCTCGCATGTCGGCTGCGACCGTCAGCCGGGTGGCTGACAGCAGAATGACCATCGGCAATTGCTGTCGGCCAGGTGCCCGTGACTGTCAGTCAGTCATCCATCAGCAACTTTGTTAA 5337 44.37 MKSIKSSGLNMEQPIRGSFDEGQYRSRSIHSDAARIDLDKKVKKVRGRGKTKNSWKQDSEKSFKEKRTIESLFEKDFVERLRNRIQIQTRFHFEDTEKYLPSDELGTIIRSDQARMAETIWEESVIRLAPLYRAALMGEWEIAEAIFKQDSRAITSEISLLNETALHVAVGTGGNLGFVEKLVSLMWKRSLPLTQEDLYGNTALAVAAIVGNVKAAEILVGKDEMLPAMRNRVNYSPLHLAAKYGHRDMVLYLLGVTKDEGIFTGQSGARLLNLLISFDIYDVALDILNQQPKLAVEQDQYGFTALQMLAEKPDVFESGTTQLGRCRRILHPRSRVAVEVFDASHHLPMQQSDIESPPEISNNAVAGVLMKNVYRKKHNKKHEEACKLVKRLCEEAVNVGGKKCAKLFSTSILSAARMGSVEVAIAIVRVYPYSIWFRDSRECNIFQLAVLHRQHKIYNLIYQMTSHKYFAAAFLDNNDNNILHLAGELVPSHSISGAALQLQRELQWFKEVERLVLPSYKSMTNKDNKTPRMVFSEEHEELVHQGEKWMKNTASSYTVVAALIATVAFAAIFTVPGGNDNDQGIPILINHKFFMVFVAADALALITSSASVIMFLGILTSRYAEDDFLKVLPSRLIIGLVSLFISILSMVAAFSASLCLVLVHQLRWVWAPMIVFALVPVILFAMLQFPLLVQMTSSTYGPSIFGLQSTILRKTLVMDSLLVPNYMICVRIILHIVEDVCRWFSPLIGSFKANANVIVVMNLFPTFRLSLSRRRSFSLVALIRSLRKSFRVVLDPCSVIDVERENGFSFLDPGIAFSLNGGGSGSDSEAEESDYGEELDDVQVDPGSQPNRSRYLQGNASDSEDSEDKKRTVRSAKDKRFEEMSATVDQMKNAMKINDWVSLQESFDKINKQLEKVMRVTESEKVPTLYIKALVMLEDFLNEAMANKEAKKKMSTSNSKALNSMKQKLKKNNKQYEEVIAKYRENPEIEEEKADELEEEEEDDDESEYEDDPSKIMSDSEPEPDVDEEEDLDDPSQNWEKKKSKKNKLMDKQFMKDPSEITWDTVNKKFKEVVAARGRKGTGRFEQVEQLTFLTKVAKTPAQKLEILFSVVSAQFDVNPGLSGHMPISVWKKCVQNMLSIIDILVQNSNIVVDDMVEPDENESQKPADYKGTIRVWGNLVAFVERIDTEFFKSLQCIDPHTREYVERLRDEPMFMVLAQNVQAYLERVGDYKAASKVALRRVELIYYKPQEVYDAMRKLAELSEDGDSGDASEEAKVVEESRGPASFIVTPELVPRKPTFPESSRAFMDILVTLIYQYGDERTKARAMLCDIYHHALLDEFYISRDLLLMSHLQDSVQHLDISTQILFNRAMAQLGLCGFRVGLISEGHGCLSELYSGGRVKELLAQGVSQSRYHEKTPEQERLERRRQMPYHMHINLELLEAVHLICAMLLEVPNMAGNVHDAKRKVISKNFRRLLEVSERQTFTGPPENVRDHVMAATRALRKGDFQKAFDVIASLDVWKLLRNRDEVLEMVKGKIKEEALRTYLLTYSSSYDSLSSDQLTQMFDLAEGQTHSIVSKMMINEELHASWDQPSGCVIFHDVTHTRLQGLAFQLADKLSILAESNERAVEARIGGGLDLPMRRRDNQEYAAGGAVGGSSRWPDNMSYNQGRHGGPSSRAGYSSGGRGQGGAGGYSRDRMGQSRGGNAGYQSTRYQDAAYGSGRTAYQSGSARGSQMDASARMSAATVSRVADSRMTIGNCCRPGARDCQSVIHQQLC 1778
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 10287434 10304175 - CaPI482276_05g011160.1 Cam05g1116 126520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam05g1116 1778 MobiDBLite consensus disorder prediction 951 1047 - -
Cam05g1116 1778 Pfam PCI domain 1530 1602 IPR000717 -
Cam05g1116 1778 SUPERFAMILY Ankyrin repeat 130 486 IPR036770 -
Cam05g1116 1778 MobiDBLite consensus disorder prediction 40 60 - -
Cam05g1116 1778 SUPERFAMILY Winged helix DNA-binding domain 1529 1604 IPR036390 -
Cam05g1116 1778 Coils Coil 959 1000 - -
Cam05g1116 1778 MobiDBLite consensus disorder prediction 846 860 - -
Cam05g1116 1778 Pfam Eukaryotic translation initiation factor 3 subunit 8 N-terminus 860 1465 IPR008905 GO:0003743(InterPro)|GO:0005852(InterPro)|GO:0006413(InterPro)|GO:0031369(InterPro)
Cam05g1116 1778 ProSiteProfiles Ankyrin repeat region circular profile. 233 254 - -
Cam05g1116 1778 MobiDBLite consensus disorder prediction 991 1012 - -
Cam05g1116 1778 MobiDBLite consensus disorder prediction 861 881 - -
Cam05g1116 1778 PANTHER EUKARYOTIC TRANSLATION INITATION FACTOR 3, SUBUNIT 8 EIF3S8 -RELATED 825 1706 IPR027516 GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0003743(PANTHER)|GO:0005852(InterPro)|GO:0005852(PANTHER)|GO:0006413(InterPro)|GO:0006413(PANTHER)|GO:0031369(InterPro)|GO:0031369(PANTHER)
Cam05g1116 1778 MobiDBLite consensus disorder prediction 1652 1711 - -
Cam05g1116 1778 MobiDBLite consensus disorder prediction 1662 1677 - -
Cam05g1116 1778 MobiDBLite consensus disorder prediction 1 26 - -
Cam05g1116 1778 SMART ANK_2a 161 191 IPR002110 GO:0005515(InterPro)
Cam05g1116 1778 SMART ANK_2a 233 262 IPR002110 GO:0005515(InterPro)
Cam05g1116 1778 SMART ANK_2a 199 228 IPR002110 GO:0005515(InterPro)
Cam05g1116 1778 Pfam Ankyrin repeats (3 copies) 166 254 IPR002110 GO:0005515(InterPro)
Cam05g1116 1778 MobiDBLite consensus disorder prediction 970 990 - -
Cam05g1116 1778 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 1534 1622 IPR000717 -
Cam05g1116 1778 MobiDBLite consensus disorder prediction 821 881 - -
Cam05g1116 1778 ProSiteProfiles PCI domain profile. 1433 1605 IPR000717 -
Cam05g1116 1778 Gene3D - 121 489 IPR036770 -
Cam05g1116 1778 ProSiteProfiles Ankyrin repeat profile. 233 254 IPR002110 GO:0005515(InterPro)
Cam05g1116 1778 Hamap Eukaryotic translation initiation factor 3 subunit C [EIF3C]. 816 1681 IPR027516 GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0005852(InterPro)|GO:0006413(InterPro)|GO:0031369(InterPro)
Cam05g1116 1778 Pfam Domain of unknown function 547 661 IPR026961 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam05g1116 Cam-Chr5:10287434 Cam07g0045 Cam-Chr7:1584135 2.70E-52 dispersed
Cam05g1116 Cam-Chr5:10287434 Cam05g1117 Cam-Chr5:10313390 1.60E-219 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam05g1116 K03252 - csv:101203990 1633.23