Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cam05g1129 | ATGAAAATGGAGGAAGACGACGAAGAAAGAAAATCCACCTTCCCAGCCACCACTACCACCAAATACAAAAGAGAAGCAAAAAAACTAGAAAATGGTGGAAAATTTCTTTCGACAATACCCGGTTTTTTCTTTTCTTCGGATTTTCCTTTGAAACCCATCTCAATTTCAGTATACCCAGTAAAGAATTCGATGCAAAATCAGGAAACGATGAAGATATTCAGTAGTTTCCTTCTTTGTTTACTCTCTGTAGTAACTGTAACTTCAGCAGCCACTCCAATCGCAAACCCCATCTGCCCAATGGACCTCAACTATGTCCTCAGAATCCCTTGGAATGCCACTGATTGTCGGAACCCTTTCTTCCAGGCCACTGCCAAATCTGCCATGAATGATACCTCCAAAATCCCTTGTTGTCAAACCCTTTTGTCCTTGTTTGGAATTGCTTTGGCCCAACACCTTAAAGAGACTTCTCTTTTCAACCTCCCAGACCTCGCAACCTCCAATTCTTGCCTTCGCGATTACCAATCGAAGCTCTCCTCGCTCTCCCTTCCCGGCGACCTTGTTTCCAATTGCTTTAATCCTTTGCAATTTGTGATCTCTGCTAATGTCTGTGCTGGTATTCAAACTACTCGAGATTGGGTTTCGAAACTTGGCCCTAACTCCCCGCTCGATTCTGGGTGTCGGTCGGAACTTGTTGGTCCTGGTTGTGATGCTTGTCTCGCCGCTGGTCTCAAAGTTCAAGCGACTTTGACTCGAATTGATGGTAATAAATCTCATTCTATGGATTGTTTTTACTTTGCTGTTCTTTATGCTGCTGGCATTGTGAATGAGTCTGGCCCTGAGGGCGACAGTGCGTTGGGTTGCATATTTAATTTGCCATTGAGTACTCAAAAGGATTCCAAAAGTAATCATTCTGCTCTAATTTATGGCCTTACTGCTGCTGCTGTTGGAATTTTGGTTGTTTTTGTTCTTTTGGGAATAGGATTTTGGTTTTACAAATGGAAAAAATTGGCTCAGAAGTCTAGTTTAGAGTTTGATGTGGAGCTGGATGAACAAGGGTCTAGGCTACATGCAAGGCCAAACACTGGATCAATTTGGTTCAAGATTCAGGAGCTTGAGAAGGCAACTAATAACTTTTCTTCAAAAAACTTCATTGGGAGAGGTGGGTTTGGTTTAGTTTACAAAGGGACATTACCTGATGGAAGTATGGTGGCAGTCAAGAAAGTAATTGAATCAGATTTTCAAGGCAATGCCGAGTTTTGCAATGAGGTTGAAATAATCAGTAATCTAAAGCATAGGAATCTTGTTCCACTTCGTGGTTGTTGCGTGATCGATGGGGATGACGGTCATGATGAGGGAGCAAGTGAGAGATACCTTGTTTACGATTACATGCCAAATGGAAATCTCGATGACTATTTGTTCCCTATACCATTTGATGAAGTTGGAACTGTAAAAAAATCATTGACATGGCCTCAAAGGAAGAATATTATCTTGGACGTGGCAAAGGGCTTAGCCTATCTGCACTATGGAGTGAAACCTGCCATATATCACAGAGATATCAAGGCGACGAATATATTGCTAGATGCAGACATGAGAGCAAGAGTGGCAGATTTCGGGCTCGCCAAACAAAGCAGGGAAGGACAGTCTCATCTAACGACTCGAGTTGCAGGTACTCATGGGTATTTAGCCCCTGAATATGCGCTTTATGGACAACTAACTGAGAAGAGTGATGTTTATAGCTTTGGAGTAGTTGTTTTGGAGATAATGTGTGGGAGAAAAGCTCTTGATTTCTCTCTGTCGTCATCACCGCGTGCATTCCTGATCACAGATTGGGCTTGGTCCTTGGTGAAAGCTGGAAAAATAGGGGAAACTCTAGACCGTTCACTGCTGAAAGATGGGGATTCTTCTAATTCAAATCCAAAAGCCATAATGGAAAGATTCATTGCGGTTGGAATTTTATGTTCTCATGTGATGGTTGCTTTGAGGCCCACCATTATGGAAGCTCTGAAAATGTTGGAAGGTGACATTGAAGTTCCCCAAATTTCTGATCGGCCAGTGCCTTATGGACATCCTTCATTTGTTGGTGATGGCAGCAACTTCAGTATATCACCAACATTAAGTGGACGTGAATTGCATAACGGTGACATGCTCAGATGA | 2154 | 42.57 | MKMEEDDEERKSTFPATTTTKYKREAKKLENGGKFLSTIPGFFFSSDFPLKPISISVYPVKNSMQNQETMKIFSSFLLCLLSVVTVTSAATPIANPICPMDLNYVLRIPWNATDCRNPFFQATAKSAMNDTSKIPCCQTLLSLFGIALAQHLKETSLFNLPDLATSNSCLRDYQSKLSSLSLPGDLVSNCFNPLQFVISANVCAGIQTTRDWVSKLGPNSPLDSGCRSELVGPGCDACLAAGLKVQATLTRIDGNKSHSMDCFYFAVLYAAGIVNESGPEGDSALGCIFNLPLSTQKDSKSNHSALIYGLTAAAVGILVVFVLLGIGFWFYKWKKLAQKSSLEFDVELDEQGSRLHARPNTGSIWFKIQELEKATNNFSSKNFIGRGGFGLVYKGTLPDGSMVAVKKVIESDFQGNAEFCNEVEIISNLKHRNLVPLRGCCVIDGDDGHDEGASERYLVYDYMPNGNLDDYLFPIPFDEVGTVKKSLTWPQRKNIILDVAKGLAYLHYGVKPAIYHRDIKATNILLDADMRARVADFGLAKQSREGQSHLTTRVAGTHGYLAPEYALYGQLTEKSDVYSFGVVVLEIMCGRKALDFSLSSSPRAFLITDWAWSLVKAGKIGETLDRSLLKDGDSSNSNPKAIMERFIAVGILCSHVMVALRPTIMEALKMLEGDIEVPQISDRPVPYGHPSFVGDGSNFSISPTLSGRELHNGDMLR | 717 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 10486718 | 10488871 | - | CaPI482276_05g011290.1 | Cam05g1129 | 126533 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cam05g1129 | 717 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 514 | 526 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
| Cam05g1129 | 717 | Gene3D | Transferase(Phosphotransferase) domain 1 | 463 | 681 | - | - | |
| Cam05g1129 | 717 | Pfam | Protein kinase domain | 380 | 595 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| Cam05g1129 | 717 | FunFam | probable LRR receptor-like serine/threonine-protein kinase RKF3 | 463 | 679 | - | - | |
| Cam05g1129 | 717 | Gene3D | Phosphorylase Kinase; domain 1 | 344 | 462 | - | - | |
| Cam05g1129 | 717 | SUPERFAMILY | Protein kinase-like (PK-like) | 358 | 672 | IPR011009 | - | |
| Cam05g1129 | 717 | PANTHER | OS01G0750732 PROTEIN | 114 | 680 | IPR050885 | - | |
| Cam05g1129 | 717 | SMART | serkin_6 | 378 | 671 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| Cam05g1129 | 717 | Pfam | SPARK | 96 | 263 | IPR043891 | - | |
| Cam05g1129 | 717 | FunFam | probable receptor-like protein kinase At1g11050 | 339 | 462 | - | - | |
| Cam05g1129 | 717 | ProSiteProfiles | Protein kinase domain profile. | 378 | 647 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| Cam05g1129 | 717 | ProSitePatterns | Protein kinases ATP-binding region signature. | 384 | 407 | IPR017441 | GO:0005524(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cam05g1129 | Cam-Chr5:10486718 | Cam09g2296 | Cam-Chr9:37424461 | 5.70E-70 | dispersed | |
| Cam05g1129 | Cam-Chr5:10486718 | Cam09g0653 | Cam-Chr9:6477755 | 7.60E-99 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 85186 | PF00069 | Pkinase | 9.60E-43 | CL0016 | Cam | PK |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cam05g1129 | - | - | - | 0.0 |