Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cam05g1152 | ATGGAGATTGATCTATCACTCAAAATAGATCATCACAAGGAAGAAATATTCAAACAACAAAAAGATCTTCAACAACAACAACAACAAATAATTGGAACAGTTGATGTTCTTGCAGCTTCTACCTCTGCTTTCAAACTGTTTTTGCCACACAACATTAATGTAGGAGGAGAGATTTCAGAGTTACAAATGGAAATGGATCGTATGAAGGAAGAGAACAAAGTGTTGAGAAAAGCTGTGGAACAAACAATGAAAGATTATTATGATCTTGAAATGAAAATTGGTATCATTCAACAAAACAATAACCTCAACAATAAGGACTCTCACAACTTCCTATCATTCCATGAAAATGAGAACAAGAGGCATGAAGAACCAACAAAACAAGACCTCGAACTCGGAGAAATGGCGAAGAAGAAGAGACGAGTTCGGTCGCCATCGAAGGAGGACGAAATGAGGGAGAGTGAACTAGGGCTATCATTAGGGCTCCATACAAAGAACAATGATTTGGATCAAGAAGATAATCATAGGGAATTATTACAAGAAGAAAGAAGAGAAAAGAAGAAGGAAGATTCAATAATGTCCAACTTCAACTCAATCCAAAACAAGCCACAAAGACCTGAATTGCAAGCAATGGCACCCCCACAAAACAGAAAAGCTAGGGTTTCTGTGAGAGCAAGATGTGAATCTGCCACAATGAACGATGGTTGCCAATGGAGGAAATATGGTCAAAAAATTGCGAAGGGAAATCCATGCCCTCGAGCCTATTATCGTTGCACGGTTGCACCAGGATGCCCAGTTAGAAAACAGGTTCAAAGATGTTTAGAAGACATGTCAATTCTTATAACAACGTACGAAGGAACACATAATCATCCACTTCCTGTTGGAGCCACAGCCATGGCTTCCACAGCTTCTGCAGCAGCTTCCTTTATGCTCTTAGACTCCACTAATACTACTAATAATCTTTCTTCTCTTCCAAACCCTCAAAACCCTAATTTTCTAAACCCTCAAAACCCTAATATTCTAAACTCCTCTTCCTATTCTCCAACTAATTTCCTCCAAACTCAAAACCCTAATCAACCCTCAACCAATACATTTTACACTCCATTAATCCCCACATCTTCAACCTCAAACTTCCCCCAACCCTCCAATTGGATCAATACCAACCCTACTTCCTTTTACCATACCAACTTTCCCCTTCACGGCCGCTCCTTGAGACCACCCGACGATAATAAGCCACCGTTCACACCTGAGAGTGTATCTGCTATTGCTTCTGACCCTAAGTTTCGAGTCGCCGTTGCGGCTGCCATTTCTTCGCTCATTAACAAAGAGAATAACAACACAACAACGTCAAATTCTCCTATCGAAGATTCTTCTTCTTTCGGTCCAAGTAAGGATGGGAAAGGCAGCAGTGGCGGCGGTGATAGTGATGGCACAAACAAGAAATGGGTTGTTGAGTCCCTCTCATCAAATGGTAATTAA | 1476 | 40.79 | MEIDLSLKIDHHKEEIFKQQKDLQQQQQQIIGTVDVLAASTSAFKLFLPHNINVGGEISELQMEMDRMKEENKVLRKAVEQTMKDYYDLEMKIGIIQQNNNLNNKDSHNFLSFHENENKRHEEPTKQDLELGEMAKKKRRVRSPSKEDEMRESELGLSLGLHTKNNDLDQEDNHRELLQEERREKKKEDSIMSNFNSIQNKPQRPELQAMAPPQNRKARVSVRARCESATMNDGCQWRKYGQKIAKGNPCPRAYYRCTVAPGCPVRKQVQRCLEDMSILITTYEGTHNHPLPVGATAMASTASAAASFMLLDSTNTTNNLSSLPNPQNPNFLNPQNPNILNSSSYSPTNFLQTQNPNQPSTNTFYTPLIPTSSTSNFPQPSNWINTNPTSFYHTNFPLHGRSLRPPDDNKPPFTPESVSAIASDPKFRVAVAAAISSLINKENNNTTTSNSPIEDSSSFGPSKDGKGSSGGGDSDGTNKKWVVESLSSNGN | 491 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 10744282 | 10749190 | + | CaPI482276_05g011520.1 | Cam05g1152 | 126556 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cam05g1152 | 491 | MobiDBLite | consensus disorder prediction | 396 | 419 | - | - | |
Cam05g1152 | 491 | MobiDBLite | consensus disorder prediction | 442 | 491 | - | - | |
Cam05g1152 | 491 | Pfam | WRKY DNA -binding domain | 232 | 290 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cam05g1152 | 491 | MobiDBLite | consensus disorder prediction | 442 | 464 | - | - | |
Cam05g1152 | 491 | FunFam | probable WRKY transcription factor 31 | 216 | 293 | - | - | |
Cam05g1152 | 491 | MobiDBLite | consensus disorder prediction | 196 | 219 | - | - | |
Cam05g1152 | 491 | Coils | Coil | 161 | 188 | - | - | |
Cam05g1152 | 491 | ProSiteProfiles | WRKY domain profile. | 226 | 292 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cam05g1152 | 491 | SUPERFAMILY | WRKY DNA-binding domain | 224 | 292 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cam05g1152 | 491 | Gene3D | WRKY domain | 216 | 293 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cam05g1152 | 491 | PANTHER | WRKY TRANSCRIPTION FACTOR 36-RELATED | 24 | 446 | IPR044810 | GO:0003700(InterPro) | |
Cam05g1152 | 491 | SMART | WRKY_cls | 231 | 291 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cam05g1152 | 491 | MobiDBLite | consensus disorder prediction | 471 | 491 | - | - | |
Cam05g1152 | 491 | MobiDBLite | consensus disorder prediction | 116 | 155 | - | - | |
Cam05g1152 | 491 | Coils | Coil | 9 | 29 | - | - | |
Cam05g1152 | 491 | Coils | Coil | 51 | 85 | - | - | |
Cam05g1152 | 491 | MobiDBLite | consensus disorder prediction | 116 | 172 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cam01g1496 | Cam-Chr1:28502088 | Cam05g1152 | Cam-Chr5:10744282 | 3.00E-40 | dispersed | |
Cam02g0217 | Cam-Chr2:3103043 | Cam05g1152 | Cam-Chr5:10744282 | 1.90E-41 | dispersed | |
Cam05g1152 | Cam-Chr5:10744282 | Cam10g1384 | Cam-Chr10:27444771 | 3.60E-23 | dispersed | |
Cam05g1152 | Cam-Chr5:10744282 | Cam06g1779 | Cam-Chr6:28949697 | 4.00E-43 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
51926 | PF03106 | WRKY | 2.00E-24 | CL0274 | Cam | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cam05g1152 | - | - | - | 0.0 |