Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam05g1152 ATGGAGATTGATCTATCACTCAAAATAGATCATCACAAGGAAGAAATATTCAAACAACAAAAAGATCTTCAACAACAACAACAACAAATAATTGGAACAGTTGATGTTCTTGCAGCTTCTACCTCTGCTTTCAAACTGTTTTTGCCACACAACATTAATGTAGGAGGAGAGATTTCAGAGTTACAAATGGAAATGGATCGTATGAAGGAAGAGAACAAAGTGTTGAGAAAAGCTGTGGAACAAACAATGAAAGATTATTATGATCTTGAAATGAAAATTGGTATCATTCAACAAAACAATAACCTCAACAATAAGGACTCTCACAACTTCCTATCATTCCATGAAAATGAGAACAAGAGGCATGAAGAACCAACAAAACAAGACCTCGAACTCGGAGAAATGGCGAAGAAGAAGAGACGAGTTCGGTCGCCATCGAAGGAGGACGAAATGAGGGAGAGTGAACTAGGGCTATCATTAGGGCTCCATACAAAGAACAATGATTTGGATCAAGAAGATAATCATAGGGAATTATTACAAGAAGAAAGAAGAGAAAAGAAGAAGGAAGATTCAATAATGTCCAACTTCAACTCAATCCAAAACAAGCCACAAAGACCTGAATTGCAAGCAATGGCACCCCCACAAAACAGAAAAGCTAGGGTTTCTGTGAGAGCAAGATGTGAATCTGCCACAATGAACGATGGTTGCCAATGGAGGAAATATGGTCAAAAAATTGCGAAGGGAAATCCATGCCCTCGAGCCTATTATCGTTGCACGGTTGCACCAGGATGCCCAGTTAGAAAACAGGTTCAAAGATGTTTAGAAGACATGTCAATTCTTATAACAACGTACGAAGGAACACATAATCATCCACTTCCTGTTGGAGCCACAGCCATGGCTTCCACAGCTTCTGCAGCAGCTTCCTTTATGCTCTTAGACTCCACTAATACTACTAATAATCTTTCTTCTCTTCCAAACCCTCAAAACCCTAATTTTCTAAACCCTCAAAACCCTAATATTCTAAACTCCTCTTCCTATTCTCCAACTAATTTCCTCCAAACTCAAAACCCTAATCAACCCTCAACCAATACATTTTACACTCCATTAATCCCCACATCTTCAACCTCAAACTTCCCCCAACCCTCCAATTGGATCAATACCAACCCTACTTCCTTTTACCATACCAACTTTCCCCTTCACGGCCGCTCCTTGAGACCACCCGACGATAATAAGCCACCGTTCACACCTGAGAGTGTATCTGCTATTGCTTCTGACCCTAAGTTTCGAGTCGCCGTTGCGGCTGCCATTTCTTCGCTCATTAACAAAGAGAATAACAACACAACAACGTCAAATTCTCCTATCGAAGATTCTTCTTCTTTCGGTCCAAGTAAGGATGGGAAAGGCAGCAGTGGCGGCGGTGATAGTGATGGCACAAACAAGAAATGGGTTGTTGAGTCCCTCTCATCAAATGGTAATTAA 1476 40.79 MEIDLSLKIDHHKEEIFKQQKDLQQQQQQIIGTVDVLAASTSAFKLFLPHNINVGGEISELQMEMDRMKEENKVLRKAVEQTMKDYYDLEMKIGIIQQNNNLNNKDSHNFLSFHENENKRHEEPTKQDLELGEMAKKKRRVRSPSKEDEMRESELGLSLGLHTKNNDLDQEDNHRELLQEERREKKKEDSIMSNFNSIQNKPQRPELQAMAPPQNRKARVSVRARCESATMNDGCQWRKYGQKIAKGNPCPRAYYRCTVAPGCPVRKQVQRCLEDMSILITTYEGTHNHPLPVGATAMASTASAAASFMLLDSTNTTNNLSSLPNPQNPNFLNPQNPNILNSSSYSPTNFLQTQNPNQPSTNTFYTPLIPTSSTSNFPQPSNWINTNPTSFYHTNFPLHGRSLRPPDDNKPPFTPESVSAIASDPKFRVAVAAAISSLINKENNNTTTSNSPIEDSSSFGPSKDGKGSSGGGDSDGTNKKWVVESLSSNGN 491
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 10744282 10749190 + CaPI482276_05g011520.1 Cam05g1152 126556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam05g1152 491 MobiDBLite consensus disorder prediction 396 419 - -
Cam05g1152 491 MobiDBLite consensus disorder prediction 442 491 - -
Cam05g1152 491 Pfam WRKY DNA -binding domain 232 290 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cam05g1152 491 MobiDBLite consensus disorder prediction 442 464 - -
Cam05g1152 491 FunFam probable WRKY transcription factor 31 216 293 - -
Cam05g1152 491 MobiDBLite consensus disorder prediction 196 219 - -
Cam05g1152 491 Coils Coil 161 188 - -
Cam05g1152 491 ProSiteProfiles WRKY domain profile. 226 292 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cam05g1152 491 SUPERFAMILY WRKY DNA-binding domain 224 292 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cam05g1152 491 Gene3D WRKY domain 216 293 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cam05g1152 491 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 24 446 IPR044810 GO:0003700(InterPro)
Cam05g1152 491 SMART WRKY_cls 231 291 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cam05g1152 491 MobiDBLite consensus disorder prediction 471 491 - -
Cam05g1152 491 MobiDBLite consensus disorder prediction 116 155 - -
Cam05g1152 491 Coils Coil 9 29 - -
Cam05g1152 491 Coils Coil 51 85 - -
Cam05g1152 491 MobiDBLite consensus disorder prediction 116 172 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g1496 Cam-Chr1:28502088 Cam05g1152 Cam-Chr5:10744282 3.00E-40 dispersed
Cam02g0217 Cam-Chr2:3103043 Cam05g1152 Cam-Chr5:10744282 1.90E-41 dispersed
Cam05g1152 Cam-Chr5:10744282 Cam10g1384 Cam-Chr10:27444771 3.60E-23 dispersed
Cam05g1152 Cam-Chr5:10744282 Cam06g1779 Cam-Chr6:28949697 4.00E-43 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51926 PF03106 WRKY 2.00E-24 CL0274 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam05g1152 - - - 0.0