Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam05g1157 ATGTCATTCCGAAGCATTGTTCGCGATGTGAGGGATAGTATTGGGAGCTTATCTAGACGGGGTTTTGAGGTCAAGTTGAGTGGTCATCATAGAGGAAAGTCCAATGCATCGTCGCTGAATGATCTACATGACCAGCCTCCTGTTGTTCAGAATGGCTGCTGGGCTAGTCTTCCACCCGAGCTGTTGTATGATGTTATTCGAAGACTTGAAGAGAGTGAAAACACATGGCCTTCACGAAAGAATGTCGTTGCCTGTGCTGCAGTATGTCGTTCTTGGAGAATTATGTGCATGGAGATAGTTAAAGGCCCAGAAATTTGTGGGAAGCTTACCTTCCCAGTGTCACTGAAGCAGCCAGGACCACGCGATGGATCTGTACAGTGCTTCATTAAGAGGGATAAATCCAACCTAACATACCACCTCTACTTGTGTCTTAGCCCTGCTCTGCTGGTTGAAAATGGGAAATTTCTTCTCTCTGCAAAGCGTACACGAAGAACTACTAGCACAGAGTATATTATCTCGATGGACGCAGAAAACATTTCGAGATCAAGTAGCTCTTACATCGGAAAACTGAGGTCGAACTTTCTTGGAACAAAATTCATTGTCTATGATACTCAACCTCCATACACCGCTGCCCCGCTCCCTCCTCCCGGGAAAACTAGCCGTAGATTTTATTCAAAAAAGGTCTCACCAAAAGTCCCAACTGGCAGTTATAACATAGCCCATATAAGTTATGAACTAAACGTCTTAGGCACACGGGGACCCCGGAGAATGCACTGTATAATGCATTCAATACCAGTGTCTTCTCTTGATGCTGGTGGCACTGTTCCAGGACAACCCGAACTCCTCCCTCCCAACTCCCTCGACGACTCATTTCGGAGTGCATCCTTCTCCAAAGCCCTAGATCATTCCATGGAGTTCAGTAGTGCTAGATTTTCAGAAATTGGGAGGGCAGCATTGGATGGCGACGAGGAGGGAAAGATGAGACCTTTGGTTCTCAAAAACAAGCCCCCAAGATGGCACGAACAACTGCAATGTTGGTGCCTCAACTTTCGTGGGCGGGTAACTGTTGCATCGGTTAAGAACTTTCAGTTAATTGCAGCAATACAGCCAGCCGCTGGCGCTCCAACCCCGTCTCAACCAGGCCCACCCGAGCACGACAAGATCATTCTTCAGTTCGGGAAGGTCGGTAAAGACATGTTCACGATGGATTATCGTTATCCGCTCTCTGCTTTTCAGGCTTTTGCTATATGCTTGAGCAGCTTTGATACCAAATTGGCTTGTGAATAA 1287 46.93 MSFRSIVRDVRDSIGSLSRRGFEVKLSGHHRGKSNASSLNDLHDQPPVVQNGCWASLPPELLYDVIRRLEESENTWPSRKNVVACAAVCRSWRIMCMEIVKGPEICGKLTFPVSLKQPGPRDGSVQCFIKRDKSNLTYHLYLCLSPALLVENGKFLLSAKRTRRTTSTEYIISMDAENISRSSSSYIGKLRSNFLGTKFIVYDTQPPYTAAPLPPPGKTSRRFYSKKVSPKVPTGSYNIAHISYELNVLGTRGPRRMHCIMHSIPVSSLDAGGTVPGQPELLPPNSLDDSFRSASFSKALDHSMEFSSARFSEIGRAALDGDEEGKMRPLVLKNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIAAIQPAAGAPTPSQPGPPEHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 428
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 10798164 10800422 + CaPI482276_05g011570.1 Cam05g1157 126561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam05g1157 428 ProSitePatterns Tub family signature 1. 350 363 IPR018066 -
Cam05g1157 428 SUPERFAMILY F-box domain 45 97 IPR036047 GO:0005515(InterPro)
Cam05g1157 428 Gene3D Tubby Protein; Chain A 113 422 IPR025659 -
Cam05g1157 428 PANTHER TUBBY-RELATED 44 427 - -
Cam05g1157 428 Pfam F-box-like 54 97 IPR001810 GO:0005515(InterPro)
Cam05g1157 428 PRINTS Tubby superfamily signature 170 186 IPR000007 -
Cam05g1157 428 PRINTS Tubby superfamily signature 236 263 IPR000007 -
Cam05g1157 428 PRINTS Tubby superfamily signature 406 428 IPR000007 -
Cam05g1157 428 PRINTS Tubby superfamily signature 350 366 IPR000007 -
Cam05g1157 428 PRINTS Tubby superfamily signature 332 349 IPR000007 -
Cam05g1157 428 PRINTS Tubby superfamily signature 385 404 IPR000007 -
Cam05g1157 428 PRINTS Tubby superfamily signature 186 210 IPR000007 -
Cam05g1157 428 CDD F-box_AtTLP-like 54 98 - -
Cam05g1157 428 Pfam Tub family 115 423 IPR000007 -
Cam05g1157 428 SUPERFAMILY Tubby C-terminal domain-like 103 428 IPR025659 -
Cam05g1157 428 Gene3D - 49 101 - -
Cam05g1157 428 FunFam Tubby-like F-box protein 111 428 - -
Cam05g1157 428 ProSitePatterns Tub family signature 2. 413 428 IPR018066 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g2002 Cam-Chr1:33257866 Cam05g1157 Cam-Chr5:10798164 2.50E-118 dispersed
Cam05g0673 Cam-Chr5:5886305 Cam05g1157 Cam-Chr5:10798164 1.40E-118 dispersed
Cam05g1157 Cam-Chr5:10798164 Cam08g0782 Cam-Chr8:8903032 2.30E-191 dispersed
Cam05g1157 Cam-Chr5:10798164 Cam05g2064 Cam-Chr5:29312176 8.80E-119 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51927 PF01167 Tub 8.00E-117 CL0395 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam05g1157 K19600 - csv:101216314 867.84