Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cam05g1171 | ATGAGCATTACCGCGAATCAAAGAGGGTCCCGATCATGGACCACCGCCGAGGAGTTGCCGGTGTCCAGTGGGGCTCCGCTACCGCCCAAGAAAAAATGGTCAAATGCGATGCCTCTGTTCATCGCTCTCGTCGTCGTAGCAGAGATTATCTTTCTGGGTCGCCTTGATGTGGCTAAAAATGTGGCCATGGTCGATTCATGGGCTGATTTGTTTTACCGCTCGCCGCCTTCTCGTGCACTGATTGGCGGAGCTGATGATTTGAATTCCCGGTTTATTGACGGCGATCGGATTTCGGAATTGGGGATTTGTGAGGAGTGGTTGGAGAAAGAAGACGCTGTGACATATTCTAGGGACTTCCAAAAGGAGCCGATATTGGTTTCTGGTTCTGATGAGGGGTGGAAATCTTGTGCCATAGGATGTGAATTTCAGGCCAGTCCAAGTAAAGATCCGGATGCTGCTTTTGGTTTAAATCACGAGGGTGGAATGCCTTCAATTATTCGATCCATGGAATCATCCCTATATTATGCAGATAACAACATTGCCCAGGCACGACGGAATGGCTATAGTATAGTAATGACCACCAGTCTCTCATCAGATGTACCTGTTGGATACTTCTCCTGGGCCGAGTATGATATCATGGCTCCAGTGCAGGCAAAGAATGAGAGTGCCCTTGCAGCTGCTTTCATTTCAAATTGTGGTGCTCGTAACTTCCGACTGGAAGCTCTTGAGGCTCTTGAAAAGCTGAACGTCACAATAGATTCCTATGGTGCTTGTCACAGAAATCGTGATGGAAGCACAGTGGACAAATTGGAGACTCTGAAGCACTACAAGTTCAGCTTGGCTTTTGAGAATTCCAACGAGGAAGATTATGTGACTGAAAAATATTTCCAATCTCTAGTTGCTGGAGCTGTTCCAGTGGTTATTGGAGCTCCAAACATTGAAGAGTTTGCTCCTTCACCTGCTTCACTTTTGCATATCAGGGAACTTTCAGATGTTGAGTCAGTTGCCAACTCTATGAAATACCTTGCAGAAAATCCTGAGGCATTCAACAACTCTCTGAGGTGGAAATATGAGGGTCCATCTGATTCTTTCAAGGCACTATTGGACATGGCAGCAGTTCATTCATCATGTCGCCTTTGTATTCATGTGGCAACTGGTATTCATGAGACCGAAGAAAAGGGTCTAGCATTCAAAAATCGACCTTGTAAATGCACTAGAGGTTCGGAGACCGTTTATCACGTGTATGTCAGAGAAAGAGGAAGGTTTAATTCAGAGTCCATTTTCTTGAGGTCCAGTAATCTGACGGTTGAAGGGCTGGCATCAGCAGTGATTTCGAAGTTCAATTCTCTGAAGCACGTACCAATATGGAAGCAGGAGAGGCCTAAAAGCTTAAAAGGAGGGGATGAATTAAGGTTGTACAAAATATACCCAGTTGGGTTGACGCAAAGGCAAGCTTTATATACCTTCAGATTTAAAGAGGACTCTGATCTCAGAAGATATGTGGAAGATAACCCTTGTGCCAAATTTGAAGCCATTTTTGTATAG | 1545 | 45.11 | MSITANQRGSRSWTTAEELPVSSGAPLPPKKKWSNAMPLFIALVVVAEIIFLGRLDVAKNVAMVDSWADLFYRSPPSRALIGGADDLNSRFIDGDRISELGICEEWLEKEDAVTYSRDFQKEPILVSGSDEGWKSCAIGCEFQASPSKDPDAAFGLNHEGGMPSIIRSMESSLYYADNNIAQARRNGYSIVMTTSLSSDVPVGYFSWAEYDIMAPVQAKNESALAAAFISNCGARNFRLEALEALEKLNVTIDSYGACHRNRDGSTVDKLETLKHYKFSLAFENSNEEDYVTEKYFQSLVAGAVPVVIGAPNIEEFAPSPASLLHIRELSDVESVANSMKYLAENPEAFNNSLRWKYEGPSDSFKALLDMAAVHSSCRLCIHVATGIHETEEKGLAFKNRPCKCTRGSETVYHVYVRERGRFNSESIFLRSSNLTVEGLASAVISKFNSLKHVPIWKQERPKSLKGGDELRLYKIYPVGLTQRQALYTFRFKEDSDLRRYVEDNPCAKFEAIFV | 514 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 10963503 | 10968649 | + | CaPI482276_05g011710.1 | Cam05g1171 | 126575 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cam05g1171 | 514 | Pfam | Glycosyltransferase family 10 (fucosyltransferase) C-term | 221 | 385 | IPR001503 | GO:0006486(InterPro)|GO:0008417(InterPro)|GO:0016020(InterPro) | |
| Cam05g1171 | 514 | Gene3D | - | 167 | 363 | IPR038577 | - | |
| Cam05g1171 | 514 | FunFam | Glycoprotein 3-alpha-L-fucosyltransferase A | 170 | 363 | - | - | |
| Cam05g1171 | 514 | MobiDBLite | consensus disorder prediction | 1 | 27 | - | - | |
| Cam05g1171 | 514 | PANTHER | ALPHA- 1,3 -FUCOSYLTRANSFERASE | 64 | 486 | IPR001503 | GO:0006486(InterPro)|GO:0008417(InterPro)|GO:0016020(InterPro)|GO:0036065(PANTHER)|GO:0046920(PANTHER) | |
| Cam05g1171 | 514 | SUPERFAMILY | UDP-Glycosyltransferase/glycogen phosphorylase | 112 | 385 | - | - | |
| Cam05g1171 | 514 | MobiDBLite | consensus disorder prediction | 1 | 19 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cam02g0631 | Cam-Chr2:7292746 | Cam05g1171 | Cam-Chr5:10963503 | 1.40E-208 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cam05g1171 | K00753 | - | csv:101202837 | 941.414 |