Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam05g1172 ATGGCCGCCACCGCATTGAGCAGAGCTTTGTTTCTAATGGGGTTTCTTCTCTTTCTTCAACTGCAGCTTCCCGAAACAATGGCGGATTGTCCCTTGGACTTGAGTGGATCAAACTTTACTTTAGTTGCTTCTATTTGCTCTAACCCCAGTGAAAGAGGGAAGTGCTGCCGCTATATCAATGCATTTGTTGCAGTTTCTGTTGCTCAGCTTGCAAATGCAACCGGTGTATTGGGAGTTTCTTCAGACTTGTCTAACATTTGCCTGCAATCTATATTTCAAACCATGGGATTGTATGGAGTTCCTAGAAATGCCACGGTTTTCTGTGGGGTTGGAACAAAAATTCCAGTGAACTACGCATGTAGAGGCCGCGAAACTGTCACACAGATGCTGGAATCTCCGAAATTTACAAACGTCAGTGAAAATTGCAAGTTGCCACTATCGGAGGAGAGTACTTGTAGGAAGTGTATTAATGCTGGGATTTTATATCTCCGCAATCTGATTGGAAGAGAAGATAATATAACGTTGAATACTTGTCGCGACGCTACATTTGTTGCACTTGCTAGCCAACTTGATCCTGCTTCAGTTGTTGATCTTGCAACCTGCTTCTTTGGAGTTCAAGGCCTTAACAAGCCTCCAGCTCCACCCCCATCTTTCGCTACACCTGATATTTCCCCAAGTCCATCAGCTGCTGAGAGTCCGGGGCCACTGACGCTAGGTGTTTCTGGTGATAAAAGTCATGAACATCATTCCTACCATCTAACATTAGTGGCGGGTATTGGCATTGCGGTGACTGTCGCTTCTGTAATGATGCTGGTTGTCTTGATTGTGCTGATTCGAAGGAAAAGCAGAGAGCTAAAGGATTCTGATAAGACGGATGTTAACTCTTCAAAATCCTTCCCTTCTCGTCCCATCAAAAAGTATCAGGAAGGACCTTCAATGTTTAAAAAGTTCAGCTATAAGGAGATCAAGAAGGCAACAGATAGTTTTAGTACAACAATTGGTCAAGGAGGATATGGAACTGTTTATAAAGCTCAATTCAGTGATGACTTAGTGGTAGCTGTTAAGAGGATGAACAAATTCTCCGAGCAAGGGGATGATGAATTTGGCAGAGAAATAGAGCTGCTTGCGAGATTACATCACCGACATCTTGTTGCTTTAAGGGGCTTTTGTGTTGAAAAGCATGAACGGTTTCTTGTATACGAGTATATGGCTAATGGAAGCTTGAAGGATCATCTTCATGCTCCTGGCAGGACCCCTCTAAGTTGGCGGACAAGAATCCAAATTGCCATTGATGTCGCCAATGCTCTGGAGTATCTTCACTATTATTGTGATCCCCCACTGTGCCATAGAGACATTAAGTCCAGCAACATTTTACTGGATGAGAACTTTGTTGCTAAGGTTGCTGATTTTGGCCTTGCACACGCTTCAAAGGGTGGTTCTATTTTCTTTGAACCTGTAAATACCGATATCCGGGGAACGCCAGGTTATATGGATCCCGAGTATGTTATCACACAAGAACTTACTGAGAAAAGTGATATATACAGCTATGGCGTGCTACTTCTGGAAATAGTTACTGGCAGACGTGCGATACAAGACGGGAAGAATTTGGTTGAATGGTCCCTGGGGTACATGATTTCAGATTCAAGGATATCTGAACTAGTAGATCCAAGTCTCAAGAGTTCTTTTAACTTGGACCAACTTCACACGGTTCTGTCAATTGTGAGATGGTGCACCGAGGGAGAAGGCAGGGCAAGGCCTTCAATTAAACAGGTGCTTCGACTATTGTACGAGAGCTCGGACCCAATGCATCAAGGGCTCGTAGAGGCTGTGGATGATGAAGAATATGGAGGTATTGAAGGGAGACAGAGCATGAGCAAGAGAAAAATGCATAAAAGTGATGCAATTTTCCACAGTGGAGATGGAAGGTATCTTGCTTCTTCATCAAGCACATCTAGGTCATATTGTAGTAGAAGCTTTTTGCTTGAAACTGGTTCACCACAGTCTCCTCCCAATAATTTGTCTGTTTCAGACCAATTGTTTTAG 2043 43.47 MAATALSRALFLMGFLLFLQLQLPETMADCPLDLSGSNFTLVASICSNPSERGKCCRYINAFVAVSVAQLANATGVLGVSSDLSNICLQSIFQTMGLYGVPRNATVFCGVGTKIPVNYACRGRETVTQMLESPKFTNVSENCKLPLSEESTCRKCINAGILYLRNLIGREDNITLNTCRDATFVALASQLDPASVVDLATCFFGVQGLNKPPAPPPSFATPDISPSPSAAESPGPLTLGVSGDKSHEHHSYHLTLVAGIGIAVTVASVMMLVVLIVLIRRKSRELKDSDKTDVNSSKSFPSRPIKKYQEGPSMFKKFSYKEIKKATDSFSTTIGQGGYGTVYKAQFSDDLVVAVKRMNKFSEQGDDEFGREIELLARLHHRHLVALRGFCVEKHERFLVYEYMANGSLKDHLHAPGRTPLSWRTRIQIAIDVANALEYLHYYCDPPLCHRDIKSSNILLDENFVAKVADFGLAHASKGGSIFFEPVNTDIRGTPGYMDPEYVITQELTEKSDIYSYGVLLLEIVTGRRAIQDGKNLVEWSLGYMISDSRISELVDPSLKSSFNLDQLHTVLSIVRWCTEGEGRARPSIKQVLRLLYESSDPMHQGLVEAVDDEEYGGIEGRQSMSKRKMHKSDAIFHSGDGRYLASSSSTSRSYCSRSFLLETGSPQSPPNNLSVSDQLF 680
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 10969562 10976470 - CaPI482276_05g011720.1 Cam05g1172 126576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam05g1172 680 ProSitePatterns Protein kinases ATP-binding region signature. 333 355 IPR017441 GO:0005524(InterPro)
Cam05g1172 680 SUPERFAMILY Protein kinase-like (PK-like) 308 596 IPR011009 -
Cam05g1172 680 FunFam Putative receptor-like protein kinase 296 402 - -
Cam05g1172 680 Gene3D Phosphorylase Kinase; domain 1 290 402 - -
Cam05g1172 680 Gene3D Transferase(Phosphotransferase) domain 1 403 614 - -
Cam05g1172 680 ProSiteProfiles Protein kinase domain profile. 327 606 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam05g1172 680 SMART serkin_6 327 602 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam05g1172 680 Pfam SPARK 28 168 IPR043891 -
Cam05g1172 680 MobiDBLite consensus disorder prediction 661 680 - -
Cam05g1172 680 ProSitePatterns Serine/Threonine protein kinases active-site signature. 447 459 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam05g1172 680 FunFam Putative receptor-like protein kinase 403 603 - -
Cam05g1172 680 CDD STKc_IRAK 333 595 - -
Cam05g1172 680 Pfam Protein kinase domain 330 593 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam05g1172 680 PANTHER OS01G0750732 PROTEIN 171 638 IPR050885 -
Cam05g1172 680 MobiDBLite consensus disorder prediction 213 243 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g0116 Cam-Chr1:1433136 Cam05g1172 Cam-Chr5:10969562 3.70E-46 dispersed
Cam02g2325 Cam-Chr2:35808221 Cam05g1172 Cam-Chr5:10969562 2.00E-53 dispersed
Cam05g1172 Cam-Chr5:10969562 Cam05g1656 Cam-Chr5:24414889 2.10E-66 dispersed
Cam05g1172 Cam-Chr5:10969562 Cam05g2521 Cam-Chr5:33057827 1.70E-63 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85187 PF00069 Pkinase 3.40E-49 CL0016 Cam PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam05g1172 - - - 0.0