Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam05g1176 ATGCCTGGGACTGGAAGTGTTGCTGTTCAACCTTTGGATTTGAGCGTACACATTCCATATCATTTCAGATGCCCCATTTCTCTTGAGCTCATGCGTGATCCTGTCACCGTCAGCACCGGTCAGACCTACGACCGTTCAAGTATAGAGTCATGGGTAGCCACCGGAAACACCACTTGTCCGGTTACTAGGGCTCCACTCACCGACTTCACGCTCATCCCTAACCATACACTGCGACGCTTAATCCAGGACTGGTGCGTTGCCAATCGGTCTTACGGGGTTGAGCGGATTCCGACTCCGAAGCAACCGGCGGAACCGTCTTTGGTTAGGTCTTTGCTTAGCCAAGCTTCGTCCAGATCGAGTGGTTCGAGTTTGAGAATCTCGGCTTTGCGTCGGTTGAAAGGACTCGCTCGTGACTCGGATAAGAATCGGTCTCTGATTTCATCGCTTAACGCTCGTGAAATTCTTCTGGATGTTGTTTTTTCGAATTTGGATTCGGATTCGGATTCGTTTTCACCTGATTTGAGCCGCGAATCGCTTGCGCTTCTTGTGATGTTACCGCTCACGGAATCTGAGTGCGTTCTTGTTGCGTCTGATCCGCAACGGATTGGTTATCTGTCACATCTTCTATTTGATTCTTCGATTGAAGTCCGAATCAATGCTGCGGCGTTGATTGAAATTGTAATTGCCGGAACTCGAGCGTCGGAGCTTCGAAGCCAAATTTGTGGAATCGATGAATTGTTTGAAGGCGTTGTCGAAATCCTCAGAGATCCAACGGCGTATCCACGAGCACTCAAGGTCGGGGTTAAGGCTTTATTTGCTCTCTGTTTGGTGAAACAAACCAGGCACAAGGCAGTTTCCGCCGGCGCCGCCGAGATTATCATCGATCGATTTCCTGATTTGGAGAAGTATGACGCTGAGCGAGCCCTAGCTACGATTGAACTCATTTGCAGAATACCAACCGGTTGCGATGCGTTTGCAGCTCACGCGCTCACCGTTCCGCTTTTGGTGAAAGTCATTTTGAAGATCTCGGACAGAGCGACGGAGTCAGCCGTCGGAGCTCTGGTGTCGCTGTGTTCGGCATCGGAGGAGAATCGGCGGGAGGCGGTGGCGGCGGGGATTTTGACACAGTTGTTATTGCTGGTGCAAAGTGATTGTACGGAGCGAGTTAAACGGAAATCGCAGGTGTTGCTGAAGCTTCTTCGAGATTCATGGCCGCAGGAATCCGTTGGAAATTCCGACGATTATGCTTGCAGTGAAATTGTGGTACCCTTTTGTTAA 1278 50.31 MPGTGSVAVQPLDLSVHIPYHFRCPISLELMRDPVTVSTGQTYDRSSIESWVATGNTTCPVTRAPLTDFTLIPNHTLRRLIQDWCVANRSYGVERIPTPKQPAEPSLVRSLLSQASSRSSGSSLRISALRRLKGLARDSDKNRSLISSLNAREILLDVVFSNLDSDSDSFSPDLSRESLALLVMLPLTESECVLVASDPQRIGYLSHLLFDSSIEVRINAAALIEIVIAGTRASELRSQICGIDELFEGVVEILRDPTAYPRALKVGVKALFALCLVKQTRHKAVSAGAAEIIIDRFPDLEKYDAERALATIELICRIPTGCDAFAAHALTVPLLVKVILKISDRATESAVGALVSLCSASEENRREAVAAGILTQLLLLVQSDCTERVKRKSQVLLKLLRDSWPQESVGNSDDYACSEIVVPFC 425
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 11025716 11026993 + CaPI482276_05g011760.1 Cam05g1176 126580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam05g1176 425 CDD RING-Ubox_PUB 19 71 IPR045210 -
Cam05g1176 425 PANTHER WDSAM1 PROTEIN 15 408 IPR045185 GO:0061630(InterPro)
Cam05g1176 425 FunFam RING-type E3 ubiquitin transferase 12 94 - -
Cam05g1176 425 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 17 91 IPR013083 -
Cam05g1176 425 ProSiteProfiles U-box domain profile. 17 91 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cam05g1176 425 Gene3D - 93 413 IPR011989 -
Cam05g1176 425 SMART Ubox_2 21 84 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cam05g1176 425 SUPERFAMILY ARM repeat 107 400 IPR016024 -
Cam05g1176 425 Pfam U-box domain 18 89 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cam05g1176 425 SUPERFAMILY RING/U-box 15 93 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g0048 Cam-Chr2:1607856 Cam05g1176 Cam-Chr5:11025716 1.10E-43 dispersed
Cam05g1176 Cam-Chr5:11025716 Cam05g1291 Cam-Chr5:13108991 3.10E-55 dispersed
Cam05g1176 Cam-Chr5:11025716 Cam10g1792 Cam-Chr10:32044687 1.50E-49 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam05g1176 - - - 0.0