Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cam05g1180 | ATGTTAACACGGGTTGCGGCGTCTTGGTGGAGCAACGTGCAGACGACAACCACTGGTAAAGGTGAGGCTGCCGACGTAGATCGTCACTGCCAACCGAAAAAAGTTACCGTTACCGGTTACCTACGGATTCCCGACTTGACCTCGTCAGATGGGCCCACAGCGCATTGCGATGGACGGTTGAGATTTCGTAGTGCAGTTTCATCTGCCCTCCAAACCCTCGCGTTTTTTTGTTCCCGTCTCTTCCTCCGTCGCTCTCTACGTCACGCGCCGCCCCGTTTTCCGGCGGCTGATCATTTCTCCACTCGGATCTTTCCGATTATCTATCCGGTGCAAGCTCAGCCTCAGAATGCTATTTCCGGCATCAATCCAGCGGCGAATGGTGGTGCCAATTTTGTGACTACTTCTTTGTACGTCGGAGATCTGGACCTGAATGTCACGGATTCGCAGCTTTATGACATATTTAATCAGGTGGGTCAGGTGGTTTCGGTTCGGGTTTGCCGAGACTTGACGACCCGGCGATCTCTCGGTTATGGTTATGTCAACTACAGCAACCCACAAGATGCTGCAAGAGCATTGGATGTGCTGAACTTTACCCCTTTGAATGGAAAGCCTATTAGAGTTATGTATTCTCATCGTGACCCAAGCATTCGCAAAAGTGGGGCTGGAAATATATTTATTAAGAATTTAGACAAGGCAATTGACCACAAAGCTCTACATGATACATTTTCTGCATTTGGTAGTATCCTGTCTTGCAAAGTGGCGTTAGATTCCTCTGGCCAGTCAAAAGGCTATGGTTTTGTGCAATTTGACAATGAGGACTCTGCTCAGAAAGCAATTGAGAAGCTGAACGGTATGCTGTTGAATGATAAGCAAGTTTATGTAGGACCCTTTCTTCGTAAACAAGAAAGAGATGGTGTTGTTGACAAATCCAAATTTAACAATGTATTTGTAAAAAATCTTTCTGAGACAACTACCGAAGAGGATTTGAACAAGGCTTTTTCTGAATTTGGGACACTCACCAGTATTGTTGTGATGAGGGATGCTGATGGCAAATCAAGATGCTTTGGATTTGTTAATTTTGAAAATGCTGATGATGCTGCTAGGGCAGTTGATGCCCTCAACGGAAAGTTAGTTGATGATAAGGAGTGGTATGTTGGGAAAGCACAGAAAAAATCTGAAAGAGAAGTTGAATTAAAGCACCGGTTTGAACAAACTATGAAAGAGGCAGCGGACAAGTACCAGGGGGCAAATTTGTACATTAAAAATTTAGATGATAGCATTGGTGATGATAAGCTTAAGGAGCTGTTTGCTCCATTTGGCACAATCACCTCATGCAAGGTCATGCGCGACCCCAATGGTATAAGCAGAGGTTCTGGATTTGTTGCATTCTCAACCCCTGAAGAGGCATCTAGAGCTCTTATGGAGATGAATGGCAAAATGGTTGTTAGCAAACCATTGTATGTAGCACTTGCACAGCGGAAGGAAGATAGAAGAGCCAGATTGCAGGCTCAGTTCTCTCAAATCCGGCCAGTTGCCATGGCTGCTTCAGTTGCCCCTCGGATGCCAATATACCCTCCTGGTGGTCCAGGTATTGGACAGCAGTTGTTTTACGGTCAAGGTCCTCCTGCAATGATTCCTTCCCAAGGTGGCTTTGGTTATCAGCAGCAGCTTGTTCCTGGTATAAGGCCTGGTGGAGGACCAATGCCAAATTTCTTTGTTCCAATGGTTCAGCAGGGTCAGCAAGGTCAGCGCCCTGGTGGCAGACGTGCAGGAGCTGTCCAGCAAACTCAGCAGCCTGTTCCAATGATGCAACAACAGATGTTGCCTAGAGGAGGACGTGTCTATCGCTACCCCCCTGGAAGAGGTTTGCCTGATGTTCCTATGCCTGGTGTTGCTGGAGGCATGTTTTCTGTTCCATATGATATGGGAGGTATGCCATTGCGTGATGCGGCACACTCTCAACCTATCCCTATTGGTGCTCTGGCTTCTGCTCTTGCAAATGCTACTCCAGACCAGCAGAGAACAATGCTGGGGGAGAATCTTTACCCGCTAGTGGAACAGTTGGAGCCGGACAACGCGGCCAAGGTAACTGGAATGCTCCTGGAGATGGACCAGACTGAGGTTTTGCATTTACTAGAGTCCCCAGAGGCTTTGAAGGCCAAAGTAGCCGAAGCTATGGAGGTTTTGAGGAATGTTGCTGCAGCTCAGCAGCAGCAAGCTGGCAATGCAGCAGATCAGCTAGCTTCTCTGTCGCTGACCGAGAACCTCGTGTCATGA | 2277 | 47.65 | MLTRVAASWWSNVQTTTTGKGEAADVDRHCQPKKVTVTGYLRIPDLTSSDGPTAHCDGRLRFRSAVSSALQTLAFFCSRLFLRRSLRHAPPRFPAADHFSTRIFPIIYPVQAQPQNAISGINPAANGGANFVTTSLYVGDLDLNVTDSQLYDIFNQVGQVVSVRVCRDLTTRRSLGYGYVNYSNPQDAARALDVLNFTPLNGKPIRVMYSHRDPSIRKSGAGNIFIKNLDKAIDHKALHDTFSAFGSILSCKVALDSSGQSKGYGFVQFDNEDSAQKAIEKLNGMLLNDKQVYVGPFLRKQERDGVVDKSKFNNVFVKNLSETTTEEDLNKAFSEFGTLTSIVVMRDADGKSRCFGFVNFENADDAARAVDALNGKLVDDKEWYVGKAQKKSEREVELKHRFEQTMKEAADKYQGANLYIKNLDDSIGDDKLKELFAPFGTITSCKVMRDPNGISRGSGFVAFSTPEEASRALMEMNGKMVVSKPLYVALAQRKEDRRARLQAQFSQIRPVAMAASVAPRMPIYPPGGPGIGQQLFYGQGPPAMIPSQGGFGYQQQLVPGIRPGGGPMPNFFVPMVQQGQQGQRPGGRRAGAVQQTQQPVPMMQQQMLPRGGRVYRYPPGRGLPDVPMPGVAGGMFSVPYDMGGMPLRDAAHSQPIPIGALASALANATPDQQRTMLGENLYPLVEQLEPDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAAAQQQQAGNAADQLASLSLTENLVS | 758 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 11063566 | 11070280 | - | CaPI482276_05g011800.1 | Cam05g1180 | 126584 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cam05g1180 | 758 | CDD | RRM2_I_PABPs | 220 | 296 | IPR045305 | - | |
| Cam05g1180 | 758 | Gene3D | - | 653 | 734 | - | - | |
| Cam05g1180 | 758 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 134 | 212 | IPR000504 | GO:0003723(InterPro) | |
| Cam05g1180 | 758 | CDD | RRM4_I_PABPs | 415 | 493 | - | - | |
| Cam05g1180 | 758 | SUPERFAMILY | PABC (PABP) domain | 600 | 750 | IPR036053 | GO:0003723(InterPro) | |
| Cam05g1180 | 758 | SMART | rrm1_1 | 417 | 489 | IPR000504 | GO:0003723(InterPro) | |
| Cam05g1180 | 758 | SMART | rrm1_1 | 223 | 295 | IPR000504 | GO:0003723(InterPro) | |
| Cam05g1180 | 758 | SMART | rrm1_1 | 314 | 386 | IPR000504 | GO:0003723(InterPro) | |
| Cam05g1180 | 758 | SMART | rrm1_1 | 135 | 208 | IPR000504 | GO:0003723(InterPro) | |
| Cam05g1180 | 758 | Pfam | RNA recognition motif | 315 | 383 | IPR000504 | GO:0003723(InterPro) | |
| Cam05g1180 | 758 | Pfam | RNA recognition motif | 224 | 292 | IPR000504 | GO:0003723(InterPro) | |
| Cam05g1180 | 758 | Pfam | RNA recognition motif | 136 | 206 | IPR000504 | GO:0003723(InterPro) | |
| Cam05g1180 | 758 | Pfam | RNA recognition motif | 418 | 486 | IPR000504 | GO:0003723(InterPro) | |
| Cam05g1180 | 758 | FunFam | Polyadenylate-binding protein | 120 | 222 | - | - | |
| Cam05g1180 | 758 | ProSiteProfiles | Poly(A)-binding protein C-terminal (PABC) domain profile. | 657 | 734 | IPR002004 | GO:0003723(InterPro) | |
| Cam05g1180 | 758 | Gene3D | - | 223 | 295 | IPR012677 | - | |
| Cam05g1180 | 758 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 416 | 493 | IPR000504 | GO:0003723(InterPro) | |
| Cam05g1180 | 758 | SMART | poly_2 | 669 | 732 | IPR002004 | GO:0003723(InterPro) | |
| Cam05g1180 | 758 | FunFam | Polyadenylate-binding protein | 303 | 398 | - | - | |
| Cam05g1180 | 758 | Pfam | Poly-adenylate binding protein, unique domain | 664 | 729 | IPR002004 | GO:0003723(InterPro) | |
| Cam05g1180 | 758 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 313 | 390 | IPR000504 | GO:0003723(InterPro) | |
| Cam05g1180 | 758 | SMART | rrm2_1 | 223 | 295 | IPR003954 | GO:0003676(InterPro) | |
| Cam05g1180 | 758 | SMART | rrm2_1 | 314 | 386 | IPR003954 | GO:0003676(InterPro) | |
| Cam05g1180 | 758 | SMART | rrm2_1 | 417 | 489 | IPR003954 | GO:0003676(InterPro) | |
| Cam05g1180 | 758 | SMART | rrm2_1 | 135 | 208 | IPR003954 | GO:0003676(InterPro) | |
| Cam05g1180 | 758 | MobiDBLite | consensus disorder prediction | 578 | 599 | - | - | |
| Cam05g1180 | 758 | FunFam | Polyadenylate-binding protein | 653 | 736 | - | - | |
| Cam05g1180 | 758 | FunFam | Polyadenylate-binding protein | 399 | 504 | - | - | |
| Cam05g1180 | 758 | CDD | RRM1_I_PABPs | 135 | 214 | IPR034364 | - | |
| Cam05g1180 | 758 | Gene3D | - | 298 | 398 | IPR012677 | - | |
| Cam05g1180 | 758 | SUPERFAMILY | RNA-binding domain, RBD | 134 | 303 | IPR035979 | GO:0003676(InterPro) | |
| Cam05g1180 | 758 | Gene3D | - | 124 | 222 | IPR012677 | - | |
| Cam05g1180 | 758 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 222 | 294 | IPR000504 | GO:0003723(InterPro) | |
| Cam05g1180 | 758 | SUPERFAMILY | RNA-binding domain, RBD | 313 | 497 | IPR035979 | GO:0003676(InterPro) | |
| Cam05g1180 | 758 | FunFam | Polyadenylate-binding protein | 223 | 296 | - | - | |
| Cam05g1180 | 758 | PANTHER | RNA BINDING PROTEIN | 129 | 315 | - | GO:0003723(PANTHER)|GO:0003730(PANTHER)|GO:0005634(PANTHER)|GO:0005829(PANTHER)|GO:0008143(PANTHER)|GO:0008266(PANTHER)|GO:1990904(PANTHER) | |
| Cam05g1180 | 758 | Gene3D | - | 399 | 501 | IPR012677 | - | |
| Cam05g1180 | 758 | NCBIfam | polyadenylate binding protein, human types 1, 2, 3, 4 family | 135 | 730 | IPR006515 | GO:0003723(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cam05g0845 | Cam-Chr5:7524516 | Cam05g1180 | Cam-Chr5:11063566 | 4.40E-29 | dispersed | |
| Cam05g1180 | Cam-Chr5:11063566 | Cam08g1159 | Cam-Chr8:17959582 | 8.40E-189 | dispersed | |
| Cam08g1557 | Cam-Chr8:21814041 | Cam05g1180 | Cam-Chr5:11063566 | 3.10E-08 | transposed | |
| Cam09g1651 | Cam-Chr9:28302135 | Cam05g1180 | Cam-Chr5:11063566 | 3.80E-08 | transposed | |
| Cam02g0642 | Cam-Chr2:7421315 | Cam05g1180 | Cam-Chr5:11063566 | 0.00E+00 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cam05g1180 | K13126 | - | csv:101219802 | 1198.34 |