Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam05g1186 ATGGCAATGCATCGGTACGTGCAAGCTGATGATGATGCCCAAACCCATTTGTTTCCGCTCGATTCTTTGTTTTGTGAAGAGGAGAAATGGGAGGAGGAGGAGCAGGAGGAAGATGTAGCTGAGTTAGAACAAACCCATTTCTCTTCTTTGGGATTTTTGGACGAACATCTCTCCGGGGAAGATGAACGGCTTCTCTCCATGTTGTCTAAGGAAACAGAGCAGCTGAAACAGAGCAATCTCCACCTTGAAGCTTTGTTGATGGATCCTTCTATTTCTGCTGCTCGTTCTTCAGCTGTGGACTGGATGCTCAAAGTTCAATCCCATTATGGGTTTTCAACTCTCACTGCCATTTTGGCTGTTGCTTATTTTGACAGATTCCTCCTGAGCTTCCATTTTAAGAGTGACAAGCCGTGGATGAACCAGCTTGTGGCTGTCACTTGCCTCTCTTTGGCGGCTAAAGTGGAGGAGATTCAAGTTCCTCTTCTCTTGGACCTTCAAGTAGAGGATGCTAAGTATGTGTTTGAGGCCAAAACCATTCAGAGAATGGAGCTTCTAGTGCTCTCAACTCTTCAATGGAGGATGCATTTGGTGACTCCATATTCTTTTCTTGATCACATTGTAAAGAGGCTTGGGTTAAAGAACAATCTTCACTTGGAGTTTTTCAGGCGTTCTGAGTATCTTCTCCTCTCTCTACTTTCAGATTCAAGATTTGTGGGTTATCTCCCATCTGTCTTGGCAACTGCAACAATGATGGAAGTGATAGATCAGATTGAGCCTCATAAGACATTGGAGCACCAAGATAAGCTTCTGGGTGTCCTCAAAATGAACAAGGAAAAGGTGCAATGCTGTTACAATCTTGTTGTGGAGCATTCAAAGGCCTATTCCAGTGGCTTTTATCATCCCATCAACTCCCACAAGCGCAAGCATGAACAGCAAGCTCCTGATAGCCCAAGTGGTGTGATTGATGCTGGTTTCAGTTCAGACAGCTCCAATGATTCTTGGGCATTTAGAGCAACATCAGTTTGTTCATCACCTGAACCTTCTTTCAAGAAGAGCAAATCTGAAGAGCCAAAGATGAAATTTCATTCTCTTAACAGGGCCTTTCTGGACATTGTTGGCAGCCCTTCTTGA 1131 44.21 MAMHRYVQADDDAQTHLFPLDSLFCEEEKWEEEEQEEDVAELEQTHFSSLGFLDEHLSGEDERLLSMLSKETEQLKQSNLHLEALLMDPSISAARSSAVDWMLKVQSHYGFSTLTAILAVAYFDRFLLSFHFKSDKPWMNQLVAVTCLSLAAKVEEIQVPLLLDLQVEDAKYVFEAKTIQRMELLVLSTLQWRMHLVTPYSFLDHIVKRLGLKNNLHLEFFRRSEYLLLSLLSDSRFVGYLPSVLATATMMEVIDQIEPHKTLEHQDKLLGVLKMNKEKVQCCYNLVVEHSKAYSSGFYHPINSHKRKHEQQAPDSPSGVIDAGFSSDSSNDSWAFRATSVCSSPEPSFKKSKSEEPKMKFHSLNRAFLDIVGSPS 376
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 11144878 11146306 + CaPI482276_05g011860.1 Cam05g1186 126590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam05g1186 376 Gene3D - 77 195 - -
Cam05g1186 376 MobiDBLite consensus disorder prediction 305 331 - -
Cam05g1186 376 Pfam Cyclin, C-terminal domain 197 310 IPR004367 -
Cam05g1186 376 SUPERFAMILY Cyclin-like 61 195 IPR036915 -
Cam05g1186 376 FunFam D3-type cyclin 88 195 - -
Cam05g1186 376 SMART Cyclin_C_2 197 332 IPR004367 -
Cam05g1186 376 CDD CYCLIN_AtCycD-like_rpt2 197 287 - -
Cam05g1186 376 CDD CYCLIN_AtCycD-like_rpt1 94 192 - -
Cam05g1186 376 ProSitePatterns Cyclins signature. 95 126 IPR048258 -
Cam05g1186 376 Coils Coil 25 45 - -
Cam05g1186 376 Gene3D - 66 285 - -
Cam05g1186 376 SMART cyclin_7 201 289 IPR013763 -
Cam05g1186 376 SMART cyclin_7 100 188 IPR013763 -
Cam05g1186 376 FunFam CYCLIN D32 196 285 - -
Cam05g1186 376 Pfam Cyclin, N-terminal domain 68 194 IPR006671 -
Cam05g1186 376 PANTHER CYCLINS 60 289 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Cam05g1186 376 SUPERFAMILY Cyclin-like 198 259 IPR036915 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g1798 Cam-Chr1:31554600 Cam05g1186 Cam-Chr5:11144878 8.30E-28 dispersed
Cam05g1186 Cam-Chr5:11144878 Cam08g2089 Cam-Chr8:26428121 8.60E-78 dispersed
Cam01g1752 Cam-Chr1:31117588 Cam05g1186 Cam-Chr5:11144878 1.40E-71 wgd
Cam02g0660 Cam-Chr2:7659345 Cam05g1186 Cam-Chr5:11144878 2.10E-68 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam05g1186 K14505 - csv:101221213 647.121