Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam05g1195 ATGGGTACCATTGAAACAGACAGAACTGTAACAGGATTCGCCGCCAAAGACCCATCTGGGATTCTCTCTCCTTACACTTACACTCTCAGAAACACCGGCCCCCAAGATGTTTTCATCAAAGTCATTTGCTGTGGAATCTGCCACTCTGATCTTCACCAAATCAAGAATGAACTTGGCATGTCCAATTACCCCATGGTTCCTGGACACGAGGTGGTCGGGGAAGTGGTGGAGGTTGGATCCGAAGTGGATCGATTCAGAGTTGGGGAGATGGTCGGAGTTGGGTGTATTCTTGGATCATGTTCGAGTTGTAATCCTTGTAATTCCGATAAGGAGCAGTACTGTAACAAGAGAATCTGGACCTATAACGACGTGTATCACGACGGCCGCCCCACCCAAGGCGGTTTCTCCTCCGCCATGGTTGTCCACCAAAAGTTTGTGGTGAGAATCCCAGATGGGATGTCGCCGGAGCAGGCGGCGCCGCTTCTGTGCGCGGGAGTGACGGTGTATAGCCCGCTAAGTCACTTTGGACTGAAACAGAGTGGGCTAAGAGGCGGAATTTTGGGGCTGGGTGGCGTTGGGCATATGGGTGTCAAAGTGGCAAAAGCTTTGGGCCACCACGTGACGGTGATAAGCTCGTCGGAGAAGAAGAGGGAGGAGGCTCTGGAACATCTCGGTGCCGACGAGTACTTGGTCAGCTCCGACAACACTCAAATGGAACGAGCCATTGACTCGCTCGATTACATTATCGACACCGTCCCTGTTTTTCATCCGCTCGAGCCGTATCTCTCACTGCTAAAACTCGACGGCAAATTGATTTTGATGGGTGTCATTAATACCCCATTGCAATTCGTTTCCCCTCTCCTTATGCTGGGGAGGAAGACGATTACAGGGAGCTTCATCGGAAGCATGACAGAGACACAAGAAGTATTGGATTTTTTTAAAGAGAAGGAGCTGAGCTCCATGATTGAAGTGATAAAGCTTGATTACATAAACAAGGCTTTCGAGAGGTTGGAGAAGAACGATGTTAGATACAGGTTCGTCGTCGACATTGCCGGAAGTAAGATGCCTCAGTGA 1074 49.91 MGTIETDRTVTGFAAKDPSGILSPYTYTLRNTGPQDVFIKVICCGICHSDLHQIKNELGMSNYPMVPGHEVVGEVVEVGSEVDRFRVGEMVGVGCILGSCSSCNPCNSDKEQYCNKRIWTYNDVYHDGRPTQGGFSSAMVVHQKFVVRIPDGMSPEQAAPLLCAGVTVYSPLSHFGLKQSGLRGGILGLGGVGHMGVKVAKALGHHVTVISSSEKKREEALEHLGADEYLVSSDNTQMERAIDSLDYIIDTVPVFHPLEPYLSLLKLDGKLILMGVINTPLQFVSPLLMLGRKTITGSFIGSMTETQEVLDFFKEKELSSMIEVIKLDYINKAFERLEKNDVRYRFVVDIAGSKMPQ 357
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 11232228 11233704 - CaPI482276_05g011950.1 Cam05g1195 126599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam05g1195 357 SUPERFAMILY GroES-like 17 181 IPR011032 -
Cam05g1195 357 Gene3D - 164 320 - -
Cam05g1195 357 FunFam Putative cinnamyl alcohol dehydrogenase 6 321 350 - -
Cam05g1195 357 FunFam probable cinnamyl alcohol dehydrogenase 13 170 - -
Cam05g1195 357 PANTHER ALDEHYDE REDUCTASE 9 351 IPR047109 GO:0009809(PANTHER)|GO:0016616(PANTHER)|GO:0016616(InterPro)|GO:0045551(PANTHER)
Cam05g1195 357 SMART PKS_ER_names_mod 20 348 IPR020843 GO:0016491(InterPro)
Cam05g1195 357 CDD CAD1 11 349 IPR047109 GO:0016616(InterPro)
Cam05g1195 357 Pfam Alcohol dehydrogenase GroES-like domain 33 151 IPR013154 -
Cam05g1195 357 Gene3D - 13 350 - -
Cam05g1195 357 FunFam Cinnamyl alcohol dehydrogenase 164 320 - -
Cam05g1195 357 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 68 82 IPR002328 GO:0008270(InterPro)|GO:0016491(InterPro)
Cam05g1195 357 Pfam Zinc-binding dehydrogenase 191 314 IPR013149 -
Cam05g1195 357 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 153 318 IPR036291 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g0125 Cam-Chr1:1550428 Cam05g1195 Cam-Chr5:11232228 9.00E-85 transposed
Cam01g1869 Cam-Chr1:32222163 Cam05g1195 Cam-Chr5:11232228 4.50E-108 transposed
Cam05g1718 Cam-Chr5:25667786 Cam05g1195 Cam-Chr5:11232228 1.30E-99 transposed
Cam05g2729 Cam-Chr5:34603361 Cam05g1195 Cam-Chr5:11232228 2.80E-07 transposed
Cam09g1943 Cam-Chr9:34104190 Cam05g1195 Cam-Chr5:11232228 5.00E-10 transposed
Cam02g0668 Cam-Chr2:7811473 Cam05g1195 Cam-Chr5:11232228 5.10E-173 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam05g1195 K00083 - csv:101222395 641.343