Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam05g1220 ATGCCCTTAGAAGGTATTTTTATTGAACCTTCTTCAACCTCACTTCCTGATCTCTCTCTTCAAATCAGCCCTCCAAATGTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTCTTCTTCTTCTTATTCTTCAATTAGAACCCTCAACCATGGATTTTCAGAAAAAAGTTTTGATCTTTTGATTCAAAGAAACTCCCAATTCCAAAATAATATTTCAAATGACCCTCGAACTCAAATTGAGCTCTCTCTAGGAACCACCAACAACAACAATTCCTTCAGTGGAGCAACACTGCATCCACCCCCACCGCTCCCGCATCTCCGGGGGCTTTCGACGTTCGATGTATCATCAGACGGTTTACGACCGATCAAAGGGATTCCGGTGTATCACAACCGTCCATTTCCATTTTTGGGTGTGGATCAAAAAGATCACCATTATTTTCACCAATTTCCATCAGCTTGCTTCTTCCCAAATTACTCGAACACGAACACAAACGGAAGCAGCGGCGGAGGAGGAGTGGTTGAAATGGGTTATCATCATCATCATCATCGAGGCAGCGGAGTTGGAGGAAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATTGTTCAGCGAGGTTCAACAATGGGGTTGTTTCAGTAGAAGGAATTAAATGTTTGAATAATAATGTTAATAGTAATAATAGTAATGCAGCTTCTTCTTCTGCTTCTGATGTTTGTTCTCATGGGATGATGATGATGAGATCCAGATTTTTGCAGAAGCTTCCTGCAAAACGAAGCATGAGAGCTCCTAGAATGAGATGGACTACCTCCTTACATGCTCGCTTCGTTCATGCTGTCGAACATCTCGGCGGCCATGAAAGAGCAACACCAAAGTCAGTTCTTGAGCTTATGGATGTTAAGGATCTAACATTAGCTCATGTCAAAAGCCATTTACAGATGTATCGAACTGTTAAGACCACTGACAAACCTGCAGCTTCCTCAGGCCAATCGGATGGTTCGGGAGAGGATGATGCATCTCCTACAATGGACACAACCAGAGGGGATCATGGTGCCAAGCAATTTTCCGATCAAAGAGCTCCGCCCGACCGGTCCGGCCAGCCGCTGCCAGAGTTGGAATTTGGCTCCTCCACACTTTGGTCTAATTCTTCAAGAGATGTTTGGCCACAAAGAAACTCTAATGACATGGATGTCATAACACCAACTTTCATGTCTACACAACAAAAATCCATGCACCAAATTCAGGAATGTGATTCAGGTGTAATGAAGAGATACAATTCAGAATTCAAGAAACCAAGCTTGGAGTTCAGATTAGGCAGAGCAGAGTGGGATGTGAAACAAGACTAA 1365 41.47 MPLEGIFIEPSSTSLPDLSLQISPPNVSSSSSSSSSSSSSSSYSSIRTLNHGFSEKSFDLLIQRNSQFQNNISNDPRTQIELSLGTTNNNNSFSGATLHPPPPLPHLRGLSTFDVSSDGLRPIKGIPVYHNRPFPFLGVDQKDHHYFHQFPSACFFPNYSNTNTNGSSGGGGVVEMGYHHHHHRGSGVGGNNNNNNNNNNNNNNNNNNCSARFNNGVVSVEGIKCLNNNVNSNNSNAASSSASDVCSHGMMMMRSRFLQKLPAKRSMRAPRMRWTTSLHARFVHAVEHLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTDKPAASSGQSDGSGEDDASPTMDTTRGDHGAKQFSDQRAPPDRSGQPLPELEFGSSTLWSNSSRDVWPQRNSNDMDVITPTFMSTQQKSMHQIQECDSGVMKRYNSEFKKPSLEFRLGRAEWDVKQD 454
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 11550842 11557027 - CaPI482276_05g012200.1 Cam05g1220 126624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam05g1220 454 Gene3D - 269 326 - -
Cam05g1220 454 MobiDBLite consensus disorder prediction 324 399 - -
Cam05g1220 454 MobiDBLite consensus disorder prediction 324 347 - -
Cam05g1220 454 Pfam Myb-like DNA-binding domain 271 322 IPR001005 -
Cam05g1220 454 NCBIfam myb-like DNA-binding domain, SHAQKYF class 270 323 IPR006447 GO:0003677(InterPro)
Cam05g1220 454 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 10 452 IPR044847 GO:0000976(InterPro)|GO:0000976(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0006355(InterPro)|GO:0010158(InterPro)
Cam05g1220 454 MobiDBLite consensus disorder prediction 187 210 - -
Cam05g1220 454 MobiDBLite consensus disorder prediction 12 42 - -
Cam05g1220 454 MobiDBLite consensus disorder prediction 377 399 - -
Cam05g1220 454 FunFam Myb family transcription factor 268 326 - -
Cam05g1220 454 MobiDBLite consensus disorder prediction 1 42 - -
Cam05g1220 454 MobiDBLite consensus disorder prediction 177 210 - -
Cam05g1220 454 SUPERFAMILY Homeodomain-like 267 323 IPR009057 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g0881 Cam-Chr1:10316343 Cam05g1220 Cam-Chr5:11550842 5.30E-33 dispersed
Cam04g1068 Cam-Chr4:24822655 Cam05g1220 Cam-Chr5:11550842 2.10E-33 dispersed
Cam05g1220 Cam-Chr5:11550842 Cam10g0130 Cam-Chr10:2908328 1.60E-38 dispersed
Cam05g1220 Cam-Chr5:11550842 Cam09g1148 Cam-Chr9:12092861 1.20E-44 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51935 PF00249 Myb_DNA-binding 2.20E-05 CL0123 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam05g1220 - - - 0.0