Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cam05g1220 | ATGCCCTTAGAAGGTATTTTTATTGAACCTTCTTCAACCTCACTTCCTGATCTCTCTCTTCAAATCAGCCCTCCAAATGTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTCTTCTTCTTCTTATTCTTCAATTAGAACCCTCAACCATGGATTTTCAGAAAAAAGTTTTGATCTTTTGATTCAAAGAAACTCCCAATTCCAAAATAATATTTCAAATGACCCTCGAACTCAAATTGAGCTCTCTCTAGGAACCACCAACAACAACAATTCCTTCAGTGGAGCAACACTGCATCCACCCCCACCGCTCCCGCATCTCCGGGGGCTTTCGACGTTCGATGTATCATCAGACGGTTTACGACCGATCAAAGGGATTCCGGTGTATCACAACCGTCCATTTCCATTTTTGGGTGTGGATCAAAAAGATCACCATTATTTTCACCAATTTCCATCAGCTTGCTTCTTCCCAAATTACTCGAACACGAACACAAACGGAAGCAGCGGCGGAGGAGGAGTGGTTGAAATGGGTTATCATCATCATCATCATCGAGGCAGCGGAGTTGGAGGAAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATTGTTCAGCGAGGTTCAACAATGGGGTTGTTTCAGTAGAAGGAATTAAATGTTTGAATAATAATGTTAATAGTAATAATAGTAATGCAGCTTCTTCTTCTGCTTCTGATGTTTGTTCTCATGGGATGATGATGATGAGATCCAGATTTTTGCAGAAGCTTCCTGCAAAACGAAGCATGAGAGCTCCTAGAATGAGATGGACTACCTCCTTACATGCTCGCTTCGTTCATGCTGTCGAACATCTCGGCGGCCATGAAAGAGCAACACCAAAGTCAGTTCTTGAGCTTATGGATGTTAAGGATCTAACATTAGCTCATGTCAAAAGCCATTTACAGATGTATCGAACTGTTAAGACCACTGACAAACCTGCAGCTTCCTCAGGCCAATCGGATGGTTCGGGAGAGGATGATGCATCTCCTACAATGGACACAACCAGAGGGGATCATGGTGCCAAGCAATTTTCCGATCAAAGAGCTCCGCCCGACCGGTCCGGCCAGCCGCTGCCAGAGTTGGAATTTGGCTCCTCCACACTTTGGTCTAATTCTTCAAGAGATGTTTGGCCACAAAGAAACTCTAATGACATGGATGTCATAACACCAACTTTCATGTCTACACAACAAAAATCCATGCACCAAATTCAGGAATGTGATTCAGGTGTAATGAAGAGATACAATTCAGAATTCAAGAAACCAAGCTTGGAGTTCAGATTAGGCAGAGCAGAGTGGGATGTGAAACAAGACTAA | 1365 | 41.47 | MPLEGIFIEPSSTSLPDLSLQISPPNVSSSSSSSSSSSSSSSYSSIRTLNHGFSEKSFDLLIQRNSQFQNNISNDPRTQIELSLGTTNNNNSFSGATLHPPPPLPHLRGLSTFDVSSDGLRPIKGIPVYHNRPFPFLGVDQKDHHYFHQFPSACFFPNYSNTNTNGSSGGGGVVEMGYHHHHHRGSGVGGNNNNNNNNNNNNNNNNNNCSARFNNGVVSVEGIKCLNNNVNSNNSNAASSSASDVCSHGMMMMRSRFLQKLPAKRSMRAPRMRWTTSLHARFVHAVEHLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTDKPAASSGQSDGSGEDDASPTMDTTRGDHGAKQFSDQRAPPDRSGQPLPELEFGSSTLWSNSSRDVWPQRNSNDMDVITPTFMSTQQKSMHQIQECDSGVMKRYNSEFKKPSLEFRLGRAEWDVKQD | 454 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 11550842 | 11557027 | - | CaPI482276_05g012200.1 | Cam05g1220 | 126624 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cam05g1220 | 454 | Gene3D | - | 269 | 326 | - | - | |
Cam05g1220 | 454 | MobiDBLite | consensus disorder prediction | 324 | 399 | - | - | |
Cam05g1220 | 454 | MobiDBLite | consensus disorder prediction | 324 | 347 | - | - | |
Cam05g1220 | 454 | Pfam | Myb-like DNA-binding domain | 271 | 322 | IPR001005 | - | |
Cam05g1220 | 454 | NCBIfam | myb-like DNA-binding domain, SHAQKYF class | 270 | 323 | IPR006447 | GO:0003677(InterPro) | |
Cam05g1220 | 454 | PANTHER | TRANSCRIPTION FACTOR KAN2-RELATED | 10 | 452 | IPR044847 | GO:0000976(InterPro)|GO:0000976(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0006355(InterPro)|GO:0010158(InterPro) | |
Cam05g1220 | 454 | MobiDBLite | consensus disorder prediction | 187 | 210 | - | - | |
Cam05g1220 | 454 | MobiDBLite | consensus disorder prediction | 12 | 42 | - | - | |
Cam05g1220 | 454 | MobiDBLite | consensus disorder prediction | 377 | 399 | - | - | |
Cam05g1220 | 454 | FunFam | Myb family transcription factor | 268 | 326 | - | - | |
Cam05g1220 | 454 | MobiDBLite | consensus disorder prediction | 1 | 42 | - | - | |
Cam05g1220 | 454 | MobiDBLite | consensus disorder prediction | 177 | 210 | - | - | |
Cam05g1220 | 454 | SUPERFAMILY | Homeodomain-like | 267 | 323 | IPR009057 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cam01g0881 | Cam-Chr1:10316343 | Cam05g1220 | Cam-Chr5:11550842 | 5.30E-33 | dispersed | |
Cam04g1068 | Cam-Chr4:24822655 | Cam05g1220 | Cam-Chr5:11550842 | 2.10E-33 | dispersed | |
Cam05g1220 | Cam-Chr5:11550842 | Cam10g0130 | Cam-Chr10:2908328 | 1.60E-38 | dispersed | |
Cam05g1220 | Cam-Chr5:11550842 | Cam09g1148 | Cam-Chr9:12092861 | 1.20E-44 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
51935 | PF00249 | Myb_DNA-binding | 2.20E-05 | CL0123 | Cam | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cam05g1220 | - | - | - | 0.0 |