Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam05g1236 ATGGATTATATGATGGATGGTCGTGGGGGTTATGGCGGTGGGTCAACTGATGAACAAGAAGGTTCTAATGATCGCAAGGGGAAAAAGACTTACCATCGTCATAATCCTTACCAGATTCAGCAACTTGAATCATTTTTCAGGGCATGCCCACACCCTGATGAAAATCAGCGGCGCCAGCTGAGTCGAGAGCTTGGTCTTGAGACCAAACAGATCAAATTTTGGTTTCAAAACAAGAGGACTCAAACAAAGGCTCAGAATGAGCGAGCAGACAACTCTTCGCTTCGGACAGAGAATGAAAAGATTCAATGTGAAAATCTTGCGATTAGAGAAGCGTTGAGGAATGTGATCTGTCCATCCTGTGGAGGTCCACCTTTTGGAGAGGAAGAACGGCAGCGCAATCTCCAAAAACTACGTCTTGAAAATTCTCACTTAAAAGAAGAGCATGACAAAGTGTCTAACCTTCTTGCCAAGTACATTGGAAAACCAATATCACAACTTGAATCACTATTGCCTGTTCTTGGATCTTCAATTGATTTGTCACCAAGAAGTTCCCTTACCCAAATAGTTGCAAGTCCTGCAGTCGATCTTATTTCTGATCCTGTGATATTAGATGGAGCAGCAACACCCTACCAATCAAGAGGTATTAATGATTTGGAAAATGCTCTTATGTTGGAAACTGCTGCAACTGCCTTGGAAGAGTTAATCAGACTTCTGAGGATTGATGAGCCTTTGTGGATGAAGACCCTGAATGATGGGAGGTATGTTCTCCATCGTGAAAGCTACGACAAAATATTTCCTAGACCAAATCACTTCAAATCTTCTAGTGCTCGTACTGAATCATCAAAAGCTTCAGGAGTGGTGACAATGAGTGCAATTCAATTGGTTGATTTTTTTTTAGATGCGGATAAATGGGCAGATCTTTTTCCAACCATCATTATGAATGCAGACACATTTCATATTATTGACCCTGGGATGCCTGGAAATCGCAGTGGTGCTTTGCAGTTGATGTATCAACAAATGCACATCTTTTCACCCCTCGTGTCTCCTCGGGACTTCTGCTTCCTTCGACACTGTCAGCAGATTGAGCTTGGTGTCTGGGTAATTGTGGATGTTTCATATGAAATCTTAAAGGATTGTGTCACCTCTGCCCGCTGCTGGAGGCTTCCTTCTGGATGCTTGATTCAAGAAATGCCCAATGGTTGCTCTAAGATTACCTGGGTCGAGCATGTGGAAGTGGATGATAAAACACAAACCCACCGGCTCTATCGAGATCTTGTGTTCAATACTTTGGCATATGGAGCCGATCGATGGTTTTTCACTCTTCAAAGGATGTGTGAGAGATTGGCTTACACTTTCAGGGATTGTGCACCTAGCCATGAACTTGGAGGAGTGTTAACTTCTCCTGAAGGTAGGAGAAGCATCACGAAGCTGTCACATAGAATGGTCAAAAATTTCTGTGGCGTACTGAGCATGTCAGGTAAATTAGATTTCCCTCAGTTATCTGAAGTGAACAACAGCGGTGTTCGAATATCTGTTCGGATTAGCTCGGAACTGGGGCAACCCAGTGGGACAGTCGTTAGTGCGGCGACATCTCTTTGGCTTCCCCTGCAACCTGAAATTATCTTTAATTTCTTCAGGGATGAGAAGGCCAGAGTTCAGTGGGATGTTCTCTCTTATGGCAACCCAGTACATGAAATTGCACACATCTTAACAGGAGTTCATCCAGGAAACTCAATATCGATAATTCGGAACAACATGCTGATTCTTCAAGAAAGCTGCATAGATCCGCTAGGATCCTTAGTGATATATGCACCCATCGACTTGCCTGCTATGAACATTGCAACAAGTGGTCAGGACCCATCAGGGATACCGATACTTCCATCAGGGTTTGTAATCACAGGGGATGGCCGTATGCATTCAGGAATTGGAGCTTCGACGAGTGCTACCTCAGGGAGGCCGAGCGGGTCTCTGTTAACCATAGCTTTTCAGATATTGGTGTCCAGTGTATCATCTTCAAAACAACTGAATGTGGAGTCTGTGGCAACAGTGAATACTCTTATTAGTGCCACAGTTCAGAGGATAAAGGCTGCATTGAATTGCTCTGGCTTGGATTGA 2115 43.92 MDYMMDGRGGYGGGSTDEQEGSNDRKGKKTYHRHNPYQIQQLESFFRACPHPDENQRRQLSRELGLETKQIKFWFQNKRTQTKAQNERADNSSLRTENEKIQCENLAIREALRNVICPSCGGPPFGEEERQRNLQKLRLENSHLKEEHDKVSNLLAKYIGKPISQLESLLPVLGSSIDLSPRSSLTQIVASPAVDLISDPVILDGAATPYQSRGINDLENALMLETAATALEELIRLLRIDEPLWMKTLNDGRYVLHRESYDKIFPRPNHFKSSSARTESSKASGVVTMSAIQLVDFFLDADKWADLFPTIIMNADTFHIIDPGMPGNRSGALQLMYQQMHIFSPLVSPRDFCFLRHCQQIELGVWVIVDVSYEILKDCVTSARCWRLPSGCLIQEMPNGCSKITWVEHVEVDDKTQTHRLYRDLVFNTLAYGADRWFFTLQRMCERLAYTFRDCAPSHELGGVLTSPEGRRSITKLSHRMVKNFCGVLSMSGKLDFPQLSEVNNSGVRISVRISSELGQPSGTVVSAATSLWLPLQPEIIFNFFRDEKARVQWDVLSYGNPVHEIAHILTGVHPGNSISIIRNNMLILQESCIDPLGSLVIYAPIDLPAMNIATSGQDPSGIPILPSGFVITGDGRMHSGIGASTSATSGRPSGSLLTIAFQILVSSVSSSKQLNVESVATVNTLISATVQRIKAALNCSGLD 704
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 11944761 11948618 + CaPI482276_05g012360.1 Cam05g1236 126640
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam05g1236 704 MobiDBLite consensus disorder prediction 1 31 - -
Cam05g1236 704 SUPERFAMILY Homeodomain-like 14 86 IPR009057 -
Cam05g1236 704 Gene3D - 225 426 IPR023393 -
Cam05g1236 704 Gene3D - 15 102 - -
Cam05g1236 704 FunFam Homeobox-leucine zipper protein HDG1 15 101 - -
Cam05g1236 704 SMART START_1 225 447 IPR002913 GO:0008289(InterPro)
Cam05g1236 704 Coils Coil 84 104 - -
Cam05g1236 704 SMART HOX_1 27 89 IPR001356 GO:0003677(InterPro)
Cam05g1236 704 SUPERFAMILY Bet v1-like 218 449 - -
Cam05g1236 704 CDD homeodomain 28 86 IPR001356 GO:0003677(InterPro)
Cam05g1236 704 ProSitePatterns 'Homeobox' domain signature. 60 83 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Cam05g1236 704 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 17 701 IPR042160 -
Cam05g1236 704 Pfam START domain 227 447 IPR002913 GO:0008289(InterPro)
Cam05g1236 704 Pfam Homeodomain 28 83 IPR001356 GO:0003677(InterPro)
Cam05g1236 704 CDD START_ArGLABRA2_like 221 446 - -
Cam05g1236 704 SUPERFAMILY Bet v1-like 468 636 - -
Cam05g1236 704 Coils Coil 127 154 - -
Cam05g1236 704 ProSiteProfiles START domain profile. 216 450 IPR002913 GO:0008289(InterPro)
Cam05g1236 704 ProSiteProfiles 'Homeobox' domain profile. 25 85 IPR001356 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam04g1303 Cam-Chr4:26836084 Cam05g1236 Cam-Chr5:11944761 1.20E-208 dispersed
Cam05g1236 Cam-Chr5:11944761 Cam09g1150 Cam-Chr9:12205998 6.40E-143 dispersed
Cam05g1236 Cam-Chr5:11944761 Cam06g0223 Cam-Chr6:4022139 9.90E-160 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51936 PF01852 START 3.70E-36 CL0209 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam05g1236 K09338 - csv:101205899 1304.66