Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam05g1262 ATGGCGACGAAGATCGACGTAATCGAAGAGGAAGAAATCTCAAAGCTCAAAGAAGGCACTCTCATTTCCGCCGTCGCCCGACTCTGTCCCTCGAATTCAGTCGTCATCATCCAAAAGGTTATCGCGGAGGTGATAGGAACGTACTTCGTGATCTTCACCGGATGTGGAGCGGTGGCGGTGAACAAAATTTATGGATCAGTGACGTTTCCGGGAATCTGTGTGGTTTGGGGATTGATTGTGATGGTAATGGTATATTCGGTGGGACACATCTCTGGAGCGCACTTCAACCCTGCTGTTACTCTCACCTTTGCCCTTTTTCGTCGCTTCCCCTTCTCTCGGGTACCAATATACATAGGAGCTCAAGTGATGGGGTCCCTTCTGGCAAGCTGCACATTGGACCTAATGCTTGAAGTGACCCCGGAAGCCTTCTTTGGGACGGTGCCCGTTGGATCCAATCTCCAATCTTTGGTTCTTGAAATTATCATCACATTTCTCTTGATGTTTGTCGTCTCTGGGGTCTCCACTGATGACAGAGCCGTAGGAGAATTGGGAGGAATTGTGGTTGGAATGACCATTCTCTTGAATGTTTTCGTCGCCGGGCCGATTTCAGGAGCTTCTATGAATCCAGCTAGGAGCATTGGACCAGCAATAGTGAAACGACAGTTCAAAGGATTATGGGTTTACATAGTAGGACCATTGGTCGGAGCGGTCGCCGGAGGATTTTCCTATAACCTTCTTAGATTCACAAACAAGCCACTGCGAGAGATTGCCAAAAGCAGCTCATTTCTTACTGCCAACTAG 801 48.44 MATKIDVIEEEEISKLKEGTLISAVARLCPSNSVVIIQKVIAEVIGTYFVIFTGCGAVAVNKIYGSVTFPGICVVWGLIVMVMVYSVGHISGAHFNPAVTLTFALFRRFPFSRVPIYIGAQVMGSLLASCTLDLMLEVTPEAFFGTVPVGSNLQSLVLEIIITFLLMFVVSGVSTDDRAVGELGGIVVGMTILLNVFVAGPISGASMNPARSIGPAIVKRQFKGLWVYIVGPLVGAVAGGFSYNLLRFTNKPLREIAKSSSFLTAN 266
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 12476705 12486380 - CaPI482276_05g012620.1 Cam05g1262 126666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam05g1262 266 ProSitePatterns MIP family signature. 94 102 IPR022357 -
Cam05g1262 266 SUPERFAMILY Aquaporin-like 36 256 IPR023271 -
Cam05g1262 266 NCBIfam MIP family channel protein 42 243 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cam05g1262 266 Gene3D Glycerol uptake facilitator protein. 5 258 IPR023271 -
Cam05g1262 266 PANTHER AQUAPORIN NIP2-1 24 251 IPR034294 -
Cam05g1262 266 PRINTS Major intrinsic protein family signature 38 57 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cam05g1262 266 PRINTS Major intrinsic protein family signature 113 132 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cam05g1262 266 PRINTS Major intrinsic protein family signature 158 176 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cam05g1262 266 PRINTS Major intrinsic protein family signature 189 211 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cam05g1262 266 PRINTS Major intrinsic protein family signature 76 100 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cam05g1262 266 PRINTS Major intrinsic protein family signature 226 246 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cam05g1262 266 Pfam Major intrinsic protein 33 243 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cam05g1262 266 CDD MIP 38 246 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g2459 Cam-Chr1:36377652 Cam05g1262 Cam-Chr5:12476705 3.00E-80 dispersed
Cam05g0630 Cam-Chr5:5475215 Cam05g1262 Cam-Chr5:12476705 2.60E-38 dispersed
Cam05g1262 Cam-Chr5:12476705 Cam10g1178 Cam-Chr10:25081980 1.20E-54 dispersed
Cam05g1262 Cam-Chr5:12476705 Cam10g2153 Cam-Chr10:35051659 5.40E-18 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam05g1262 K09874 - csv:101215315 462.225