Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cam05g1262 | ATGGCGACGAAGATCGACGTAATCGAAGAGGAAGAAATCTCAAAGCTCAAAGAAGGCACTCTCATTTCCGCCGTCGCCCGACTCTGTCCCTCGAATTCAGTCGTCATCATCCAAAAGGTTATCGCGGAGGTGATAGGAACGTACTTCGTGATCTTCACCGGATGTGGAGCGGTGGCGGTGAACAAAATTTATGGATCAGTGACGTTTCCGGGAATCTGTGTGGTTTGGGGATTGATTGTGATGGTAATGGTATATTCGGTGGGACACATCTCTGGAGCGCACTTCAACCCTGCTGTTACTCTCACCTTTGCCCTTTTTCGTCGCTTCCCCTTCTCTCGGGTACCAATATACATAGGAGCTCAAGTGATGGGGTCCCTTCTGGCAAGCTGCACATTGGACCTAATGCTTGAAGTGACCCCGGAAGCCTTCTTTGGGACGGTGCCCGTTGGATCCAATCTCCAATCTTTGGTTCTTGAAATTATCATCACATTTCTCTTGATGTTTGTCGTCTCTGGGGTCTCCACTGATGACAGAGCCGTAGGAGAATTGGGAGGAATTGTGGTTGGAATGACCATTCTCTTGAATGTTTTCGTCGCCGGGCCGATTTCAGGAGCTTCTATGAATCCAGCTAGGAGCATTGGACCAGCAATAGTGAAACGACAGTTCAAAGGATTATGGGTTTACATAGTAGGACCATTGGTCGGAGCGGTCGCCGGAGGATTTTCCTATAACCTTCTTAGATTCACAAACAAGCCACTGCGAGAGATTGCCAAAAGCAGCTCATTTCTTACTGCCAACTAG | 801 | 48.44 | MATKIDVIEEEEISKLKEGTLISAVARLCPSNSVVIIQKVIAEVIGTYFVIFTGCGAVAVNKIYGSVTFPGICVVWGLIVMVMVYSVGHISGAHFNPAVTLTFALFRRFPFSRVPIYIGAQVMGSLLASCTLDLMLEVTPEAFFGTVPVGSNLQSLVLEIIITFLLMFVVSGVSTDDRAVGELGGIVVGMTILLNVFVAGPISGASMNPARSIGPAIVKRQFKGLWVYIVGPLVGAVAGGFSYNLLRFTNKPLREIAKSSSFLTAN | 266 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 12476705 | 12486380 | - | CaPI482276_05g012620.1 | Cam05g1262 | 126666 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cam05g1262 | 266 | ProSitePatterns | MIP family signature. | 94 | 102 | IPR022357 | - | |
Cam05g1262 | 266 | SUPERFAMILY | Aquaporin-like | 36 | 256 | IPR023271 | - | |
Cam05g1262 | 266 | NCBIfam | MIP family channel protein | 42 | 243 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Cam05g1262 | 266 | Gene3D | Glycerol uptake facilitator protein. | 5 | 258 | IPR023271 | - | |
Cam05g1262 | 266 | PANTHER | AQUAPORIN NIP2-1 | 24 | 251 | IPR034294 | - | |
Cam05g1262 | 266 | PRINTS | Major intrinsic protein family signature | 38 | 57 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Cam05g1262 | 266 | PRINTS | Major intrinsic protein family signature | 113 | 132 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Cam05g1262 | 266 | PRINTS | Major intrinsic protein family signature | 158 | 176 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Cam05g1262 | 266 | PRINTS | Major intrinsic protein family signature | 189 | 211 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Cam05g1262 | 266 | PRINTS | Major intrinsic protein family signature | 76 | 100 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Cam05g1262 | 266 | PRINTS | Major intrinsic protein family signature | 226 | 246 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Cam05g1262 | 266 | Pfam | Major intrinsic protein | 33 | 243 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Cam05g1262 | 266 | CDD | MIP | 38 | 246 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cam01g2459 | Cam-Chr1:36377652 | Cam05g1262 | Cam-Chr5:12476705 | 3.00E-80 | dispersed | |
Cam05g0630 | Cam-Chr5:5475215 | Cam05g1262 | Cam-Chr5:12476705 | 2.60E-38 | dispersed | |
Cam05g1262 | Cam-Chr5:12476705 | Cam10g1178 | Cam-Chr10:25081980 | 1.20E-54 | dispersed | |
Cam05g1262 | Cam-Chr5:12476705 | Cam10g2153 | Cam-Chr10:35051659 | 5.40E-18 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cam05g1262 | K09874 | - | csv:101215315 | 462.225 |