Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam05g1291 ATGATCTTTTCATGGAGGAAAAACAAATTTGGGTTTCTTACCAAGTTGAAGAAAGAGCTTCCGGGGGTCGATTCGGGTTCGGAAATTGCGATTCCTTCGCATTATATGTGTCCGATTTCGCTTGATTTGATGAAGGACCCTGTGATTTTGTCCACTGGGATTACTTATGATAGAGAGAGTATCGAGAAGTGGATTGAGGGGGGAAATTTTTCATGTCCTGTGACGAAACAGGATTTGATGAATTTTGACCTAATCCCTAATCATGCGTTGAGGAGGTTGATCCAAGATTGGTGTGTTGCGAATCGTTCATACGGGATCGAGCGGATTCCGACGCCGCGGATTCCGGTGACCCCGTATGAAGTTAAGGAGATTTGTTCGAGAATCTCGGTCGCGACTCAAAGAAGCGACTCGAAGAGGTGCAGTGAATTAGTTGGTAAGATCAGGAATTGGGCAAAAGAGAGCGAGAGGAATCGGAGGTGTATTGTGAATGGAGGAACTGGGGATGTTTTAGCAGCTTCGTTTGAGCATTTTGCTGGTGTTTCGATTGAGAAACATGTGGGTTTGTTGGAGGAGATTTTGTTGGTTTTGGCTTGTGTGTTCCCAGTCGCCATTGAAGGCTTATCCAAGCTCGGATCTGCTGATTCTTTGAGAAGTTTGGTTTCCTTCTTAATTGGCAAAGATCTTTCTCCCAAACAGAACGCAGTTTTTGTTCTGAAAGAACTCTTGTCAGCTGATCGAAGATATGTTAATTCATTGGCTGCCATTGAAGGAGTATCAGAAGCTTTAGTTAGCATTATCAGGGATCCTCTTTGCCCCTCTGCTACAAAAGCATCTCTTACAGCCATTTTTTACATGATTTTACCATCAGAAATCGGTGAGAAAATGGCATTGAAATTTGTGGAACTTGGCTTGGTCTCTCAGCTACTAGAATTTTTGGTAGATGCAGAGAAAAGTCTATGTGAGAAAGCTTTGGGAATTTTGGATGGAATCTGTGATTACAAACAAGGAAGAGAGAAGCTTTACGAGAATGCACTAACCATTCCACTCTTAGTCAAGAAGATCCTAAGAGTTTCAGAGTTAGCCACTGAATATTCTCTGTCAATATTGTTGAAGCTCTGCAAGAGTGGTGAGAAGGGTGAAAATGAGGTGAGGGTGGAAGCAGCCCAACTGGGTGCTTTCCAGAAGATATTGGTTCTCTTACAGGTTGGTTGTGGTGGTGACATGAAAGACAAGGTCACCGAGATGTTGAAATTATTGAATCTCTACAAAGATAGGCTAGAATGCATTGATTCATCCATGCATTTTAAGTACTTGAAGAAATCATTTTGA 1329 42.29 MIFSWRKNKFGFLTKLKKELPGVDSGSEIAIPSHYMCPISLDLMKDPVILSTGITYDRESIEKWIEGGNFSCPVTKQDLMNFDLIPNHALRRLIQDWCVANRSYGIERIPTPRIPVTPYEVKEICSRISVATQRSDSKRCSELVGKIRNWAKESERNRRCIVNGGTGDVLAASFEHFAGVSIEKHVGLLEEILLVLACVFPVAIEGLSKLGSADSLRSLVSFLIGKDLSPKQNAVFVLKELLSADRRYVNSLAAIEGVSEALVSIIRDPLCPSATKASLTAIFYMILPSEIGEKMALKFVELGLVSQLLEFLVDAEKSLCEKALGILDGICDYKQGREKLYENALTIPLLVKKILRVSELATEYSLSILLKLCKSGEKGENEVRVEAAQLGAFQKILVLLQVGCGGDMKDKVTEMLKLLNLYKDRLECIDSSMHFKYLKKSF 442
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 13108991 13110319 + CaPI482276_05g012910.1 Cam05g1291 126695
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam05g1291 442 Gene3D - 121 417 IPR011989 -
Cam05g1291 442 Pfam U-box domain 31 102 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cam05g1291 442 PANTHER WDSAM1 PROTEIN 28 430 IPR045185 GO:0061630(InterPro)
Cam05g1291 442 FunFam RING-type E3 ubiquitin transferase 25 107 - -
Cam05g1291 442 ProSiteProfiles U-box domain profile. 30 104 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cam05g1291 442 CDD RING-Ubox_PUB 32 84 IPR045210 -
Cam05g1291 442 SMART Ubox_2 34 97 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cam05g1291 442 SUPERFAMILY ARM repeat 206 400 IPR016024 -
Cam05g1291 442 SUPERFAMILY RING/U-box 25 107 - -
Cam05g1291 442 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 15 108 IPR013083 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g1597 Cam-Chr1:29485252 Cam05g1291 Cam-Chr5:13108991 6.60E-31 dispersed
Cam05g1176 Cam-Chr5:11025716 Cam05g1291 Cam-Chr5:13108991 3.10E-55 dispersed
Cam05g1291 Cam-Chr5:13108991 Cam07g0563 Cam-Chr7:8461102 5.50E-124 dispersed
Cam05g1291 Cam-Chr5:13108991 Cam10g1792 Cam-Chr10:32044687 1.20E-46 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam05g1291 - - - 0.0