Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam05g1297 ATGGAGTTCCCCCAAGGAATTTTAGCGGCGGCGGTTCTGAGTTTCGCTTTTCTGGGTTTTGTCCGGATGGATCTGGCCTCTGACAGGGCCGCGCTGGTGGGGTTTCGGGCGGCGATGGGTGGCCGGCCCCGATTAGAGTGGAATCTCTCCGATGTATCACCCTGTTCTTGGGCTGGTGTTAACTGTGACAGGAGTGGGGTTTTTGAGCTCCGGCTTCCGGCAATGGGGCTTTCCGGTGAGCTTCCCTTGGGGCTTGGGAATTTGACGCAGTTACAAACTCTTTCCCTGCGGTTTAATGCTCTGTCTGGACGGATTCCGGCGGATTTTGCGAATCTTCGTGGGCTGAGGAATCTTTACTTGCAGGGGAACTTGTTTTCCGGCGAGATTCCGGCGTTTCTGTTCGATTTGCAGAATCTTGTTCGGTTGAACATGGCGGACAACAATTTTTCAGGTGAGATTTCATCTGGGTTCAACAATCTCTCCCGTTTGGGTACTCTGTATTTACAGAACAATCAATTTACCGGAGTAGTTCCTGACTTAAATCTCACTCTTGAACAATTTAATGTCTCCTTTAATCGATTGAATGGTTCAATTCCCTTGAGGCTCTCTAGTTTTCCGGCGAGTTGTTTTGAGGGGAATTTGCTCTGTGGGGCGCCATTGTTACTCTGTAACTCGACAGCCACCGAGCCTGGTCGAAAGTCGAAGCTCTCAGGCGGGGCGATTGCTGGAATTGTGATCGGTGGTTTGTTTGTTTTGGTGTTGATTTTGGTTGTTTTGATTCTTGTGTGTCAAAGAAAGAGTAAAGGGAAATCGGAGTCGAAAGAGGGGGTTCGGTCGGCTGGTGAGGTTGGGGTGCCGAGAGAGAAGATGACGACAGTGGAAGGGAGTAGCGAAAGGGTAAGCATAGATCATTTGACTATAGCGAAATCATCAGCGAAGGGTGGGGAAAAGGATAAGAAATTGGTGTTCTTTGGTAATGTGGGAAATGTGTTTGATTTGGAGGACTTGTTGAGGGCGTCGGCGGAGGTCCTCGGGAAGGGGGCGTTCGGGACAGCGTATAAGGCGACATTGGAGACAGGGATGGTGGTGGCTGTGAAGCGGTTGAAGGAGATGACTGCGGCGGAGAAGGAGTTCAGGGAGAAAATGGAGGAGGTGGGGAGGATGAAGCATGAAAATTTAGTTCCTCTTAGAGCTTATTATTACAGCAGAGAGGAAAAGCTTTTGGTTTATGATTACATGCCAATGGGAAGCTTGTCTGCACTTTTACATGGTAGTAGAGAATCAGGGAGGACTCCGTTGAATTGGGAAGCAAGGTGTGGCATAGCGTTGGGAGTTAGCCGTGGGATTGATTACCTTCATTCTCAAGGCCCTACCATCTCTCATGGCAACATCAAATCCTCTAATGTTCTCCTCACCAGATCATACGAAGCATGTGTATCCGACTTTGGCCTTGCACAACTAGCCATGTCCCCATCAGCTCCAAGTCGTGTCGCTGGGTACCGAGCCCCAGAGATCACGGATTCTCGAAAGGTATCACAAAAAGCAGATGTTTATAGCTTCGGAGTGTTGTTATTGGAGATGCTAACAGGAAAATCTCCTACACATTCTATCTTCAATGATGAAGCTGTGGACCTTCCTAGATGGGTTCAATCTGTGGTTCAAGAGGAATGGACAGCTGAAGTGTTTGATGAACAACTTCTTAGGTACCAAAATGTTGAGGAGGAGATGGTTCAACTCTTAGAACTCGCTCTGCAATGTACCGTCCCGTATCCTGATAATCGTCCTGGAACGGACGAGATTGTTCGACGTATCGAAGAACTTTGTCGATCAACCTCCCAAAAACAGAGTGAGGCAATTGACAATGATGGAAATAACGGTATTTCCACACAGTTTCATTCACTAAACTCACCTCATCCACCATCTGCAGAGTAG 1932 48.24 MEFPQGILAAAVLSFAFLGFVRMDLASDRAALVGFRAAMGGRPRLEWNLSDVSPCSWAGVNCDRSGVFELRLPAMGLSGELPLGLGNLTQLQTLSLRFNALSGRIPADFANLRGLRNLYLQGNLFSGEIPAFLFDLQNLVRLNMADNNFSGEISSGFNNLSRLGTLYLQNNQFTGVVPDLNLTLEQFNVSFNRLNGSIPLRLSSFPASCFEGNLLCGAPLLLCNSTATEPGRKSKLSGGAIAGIVIGGLFVLVLILVVLILVCQRKSKGKSESKEGVRSAGEVGVPREKMTTVEGSSERVSIDHLTIAKSSAKGGEKDKKLVFFGNVGNVFDLEDLLRASAEVLGKGAFGTAYKATLETGMVVAVKRLKEMTAAEKEFREKMEEVGRMKHENLVPLRAYYYSREEKLLVYDYMPMGSLSALLHGSRESGRTPLNWEARCGIALGVSRGIDYLHSQGPTISHGNIKSSNVLLTRSYEACVSDFGLAQLAMSPSAPSRVAGYRAPEITDSRKVSQKADVYSFGVLLLEMLTGKSPTHSIFNDEAVDLPRWVQSVVQEEWTAEVFDEQLLRYQNVEEEMVQLLELALQCTVPYPDNRPGTDEIVRRIEELCRSTSQKQSEAIDNDGNNGISTQFHSLNSPHPPSAE 643
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 13251721 13253814 + CaPI482276_05g012970.1 Cam05g1297 126701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam05g1297 643 ProSitePatterns Protein kinases ATP-binding region signature. 344 366 IPR017441 GO:0005524(InterPro)
Cam05g1297 643 MobiDBLite consensus disorder prediction 612 643 - -
Cam05g1297 643 SUPERFAMILY Protein kinase-like (PK-like) 342 604 IPR011009 -
Cam05g1297 643 Gene3D Ribonuclease Inhibitor 25 205 IPR032675 -
Cam05g1297 643 Gene3D Transferase(Phosphotransferase) domain 1 413 631 - -
Cam05g1297 643 FunFam Probable inactive receptor kinase RLK902 25 181 - -
Cam05g1297 643 SMART LRR_typ_2 112 136 IPR003591 -
Cam05g1297 643 SMART LRR_typ_2 88 111 IPR003591 -
Cam05g1297 643 SMART LRR_typ_2 160 183 IPR003591 -
Cam05g1297 643 Coils Coil 371 391 - -
Cam05g1297 643 CDD STKc_IRAK 344 607 - -
Cam05g1297 643 Gene3D Phosphorylase Kinase; domain 1 306 412 - -
Cam05g1297 643 Pfam Protein kinase domain 342 602 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam05g1297 643 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 413 618 - -
Cam05g1297 643 ProSiteProfiles Protein kinase domain profile. 338 607 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam05g1297 643 Pfam Leucine rich repeat N-terminal domain 26 63 IPR013210 -
Cam05g1297 643 Pfam Leucine Rich Repeat 115 135 IPR001611 GO:0005515(InterPro)
Cam05g1297 643 Pfam Leucine Rich Repeat 138 160 IPR001611 GO:0005515(InterPro)
Cam05g1297 643 Pfam Leucine Rich Repeat 90 112 IPR001611 GO:0005515(InterPro)
Cam05g1297 643 PANTHER OS05G0588300 PROTEIN 11 612 IPR050994 -
Cam05g1297 643 SUPERFAMILY L domain-like 46 205 - -
Cam05g1297 643 FunFam pollen receptor-like kinase 1 307 412 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g0875 Cam-Chr1:10246795 Cam05g1297 Cam-Chr5:13251721 1.10E-136 dispersed
Cam05g1297 Cam-Chr5:13251721 Cam11g0283 Cam-Chr11:4305745 2.70E-124 dispersed
Cam08g0749 Cam-Chr8:7405007 Cam05g1297 Cam-Chr5:13251721 8.70E-08 dispersed
Cam05g1297 Cam-Chr5:13251721 Cam04g1076 Cam-Chr4:24924712 5.50E-165 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85189 PF00069 Pkinase 1.70E-38 CL0016 Cam PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam05g1297 - - - 0.0