Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam05g1332 ATGCGGATGAGTTGTAATGGTTGCAGAGTACTTCGCAAAGGTTGCAGTGAAAATTGCAGTATTCGACCTTGTTTGCAGTGGATCAAGACCCCTGAATCTCAGGCTAACGCTACCGTTTTTCTCGCTAAGTTCTATGGCCGTGCTGGTCTCATGAACCTCATCAACGCTGGTCCTGATCATCTCCGTCCTGCGATTTTTAGATCTCTTCTCTACGAGGCTTGTGGCCGGATTGTGAATCCGATTTACGGATCGGTTGGATTGTTGTGGTCTGGTAGTTGGCAGCTTTGTCAGGCGGCTGTAGAGGCCGTACTTAAAGGTGCTCCGATCACGCCGATCAACTCCGAGGCAGCGGCTACTGGCGATGGACCACCGTTGAAGGCCTACGACATTCGTCACGTTTCCAAGGATGAAAACTCCGTCGCGTCCAACGATGGTGGAGCCAATCGGCGAGTTAAGACTCGGTGCCGGTTCAAGCGGTCGGCTGTGAAGGCGAAAGGTAGTAAAAGAATCGACTCTACTGTCGATGAGTCGACTCGGCGATTCTGCTCTACCGAGTTGAACAGGTCGTCGAGTGGTGAGTCGTCGTTGAGTCACCAATCCGACTCGCGGCATCTCGAGAACGACAGTAAAGAAACCGAGAGCATGATTTCAGTGGAGACGGCGGAGGTTTCTCCTCCTCCGATGCCGTCTGTTTTGTTCCGATCGGAATCCAGTTCGGTACTGAAATCCACGGGCCAGGACGGCGGCGTAGTGGCAATTCCGCAAAGTGAATTAGCTCTAGAACTAACCCTGGGGATGGAGCCGGCGTTACGTGCCCAGCACGTGATTCCAATGAAGAAGCGAAAGATAGAGGCCGACGTTGGGTTCAGGCCCAATAACGACACGTGCAATACAGTTTTGGGCCTTGATTTTTCAGCCTGA 921 52.55 MRMSCNGCRVLRKGCSENCSIRPCLQWIKTPESQANATVFLAKFYGRAGLMNLINAGPDHLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQAAVEAVLKGAPITPINSEAAATGDGPPLKAYDIRHVSKDENSVASNDGGANRRVKTRCRFKRSAVKAKGSKRIDSTVDESTRRFCSTELNRSSSGESSLSHQSDSRHLENDSKETESMISVETAEVSPPPMPSVLFRSESSSVLKSTGQDGGVVAIPQSELALELTLGMEPALRAQHVIPMKKRKIEADVGFRPNNDTCNTVLGLDFSA 306
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 14313134 14314147 - CaPI482276_05g013320.1 Cam05g1332 126736
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam05g1332 306 PIRSF AS2 1 301 IPR017414 -
Cam05g1332 306 MobiDBLite consensus disorder prediction 184 198 - -
Cam05g1332 306 MobiDBLite consensus disorder prediction 199 215 - -
Cam05g1332 306 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 267 - GO:0010468(PANTHER)
Cam05g1332 306 MobiDBLite consensus disorder prediction 184 229 - -
Cam05g1332 306 Pfam Lateral organ boundaries (LOB) domain 4 102 IPR004883 -
Cam05g1332 306 ProSiteProfiles LOB domain profile. 3 109 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g1790 Cam-Chr1:31473310 Cam05g1332 Cam-Chr5:14313134 1.30E-44 dispersed
Cam05g1332 Cam-Chr5:14313134 Cam05g2471 Cam-Chr5:32570619 1.70E-52 dispersed
Cam05g1332 Cam-Chr5:14313134 Cam06g1623 Cam-Chr6:27689349 5.20E-73 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51943 PF03195 LOB 1.80E-24 No_clan Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam05g1332 - - - 0.0