Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam05g1414 ATGCTTCCCAAATCCACCGGAATCCTCTGGCTTGACGCCGACCATGACGACTCCTCTTCTTGGTCCAGAACCAACCACCACACCGACGACGCCATCGCCATTTCCGCCGCCGGCTCCATTTCCTCCTTCAAATCCATCCTCGAATCCGACTGGTATATCAACTCTACTACTCCTCTTAATCCTTCTCACCAAGATTTCCATTCCCTTTCTTCTCACCCTGACATTCGAGACCTTCCTTTCTCCTCCAATCCTTCTGATAACTTCCTCTTACACCCTATAGATTCCTCCTCTTCTTGCTCTCCTTCTCACGCTTTTGCTCTCGATCCTTCCCATTCCCACTCCACCTTTCCTCCTCACAAATCATCTTGTTTCTCTTCTCTTCTTAACGTTGTTTGCAGCAATAATTTTGATAATGCCTTCGATTTAGGCGGTGAGAGTGGTCTGCTTGGATCTTACCCAGGGAACCAAGCTTCCAATTCCTCCGTTTTGATGGGATTCACTGGCATTTCCTCTCTTCCTCAAATCGGTAATCAGGAGCTCAGCTTAAACAACTCGGAGTTTCCGGCGACTCGGTTGCTTCCGGTCGCCGATAACCCTCCTGCATTAGGAGCTGGATTTAATCCGGCGGCTGCTTTCGAGAGCTTCGATGCCTGCGGGAATGCTCTGTTTCAGAACAGGTCTAAGGTTTTGAGACCTCTCGAAGTGTTCCCGCAGGTCGGTGCGCAGCCGACGCTGTTCCAGAAGCGGGCGGCGCATCGAGTTGGCTCTGCCGGACCTGATAAACTAGAGAGTTTGGAGGTTTCGGGTTTTAAATTAGGAGAAGGCTCAATGTGGACGCCGAATTTGGAGAGCCTGAGGAAGATGACCGGCGACGAGGACATTGAGGACGGCAGCGTGGATGTTTCTCGCTTGAATTACGATTCCGACGAACCCAATGAGTATAATAAGCAAGAGGACAATGTTAACACTAAAAACTGCGGAAGCAATTCCAATGCCAACAGTACGGTAACTGGCGGAGACCAGAAGGGGAAGAAGAAGGGGCTGCCGGCGAAAAATCTCATGGCAGAGCGGCGGCGGAGAAAGAAACTGAATGATAGACTTTACATGCTTAGGTCCGTGGTACCCAAGATAAGCAAGATGGATAGAGCTTCAATACTTGGAGACGCCATTGACTATTTGAAGGAGCTTCTTCAAAGGATAAATGATCTCCATAATGAACTTGAGTCTACTCCTCCTGGTTCTTTGTTGCAGCCCTCTTCGAGCTTTCACCCTTTGACGCCGACGCTGCCAACTCTTCCCTGTCGTGTCAAAGAGGAGCTGTGTCCAAGCTCCTTGTCCAGCCCCAATACCCAGCCTGCCAGGGTTGAAGTCCGGGTCAGAGAAGGCAGAGCTGTCAATATTCACATGTTTTGTTCTCGCAAGCCGGGTCTCTTGCTATCCACCATGAGGGCTCTGGATAACCTTGGCTTGGACATCCAACAAGCTGTAATCAGCTGTTTCAATGGATTTGCTTTAGACGTCTTTCGCGCTGAGCAATCCAAGGAAGGTCAGGAGATGTTGCCTGAGCAAATAAAAGCAGTGCTGTTGGATTCAGCTGGTTTACATGGCATTATATAA 1617 49.6 MLPKSTGILWLDADHDDSSSWSRTNHHTDDAIAISAAGSISSFKSILESDWYINSTTPLNPSHQDFHSLSSHPDIRDLPFSSNPSDNFLLHPIDSSSSCSPSHAFALDPSHSHSTFPPHKSSCFSSLLNVVCSNNFDNAFDLGGESGLLGSYPGNQASNSSVLMGFTGISSLPQIGNQELSLNNSEFPATRLLPVADNPPALGAGFNPAAAFESFDACGNALFQNRSKVLRPLEVFPQVGAQPTLFQKRAAHRVGSAGPDKLESLEVSGFKLGEGSMWTPNLESLRKMTGDEDIEDGSVDVSRLNYDSDEPNEYNKQEDNVNTKNCGSNSNANSTVTGGDQKGKKKGLPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIDYLKELLQRINDLHNELESTPPGSLLQPSSSFHPLTPTLPTLPCRVKEELCPSSLSSPNTQPARVEVRVREGRAVNIHMFCSRKPGLLLSTMRALDNLGLDIQQAVISCFNGFALDVFRAEQSKEGQEMLPEQIKAVLLDSAGLHGII 538
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 16542795 16545683 - CaPI482276_05g014140.1 Cam05g1414 126818
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam05g1414 538 MobiDBLite consensus disorder prediction 318 340 - -
Cam05g1414 538 CDD ACT_UUR-ACR-like 467 527 - -
Cam05g1414 538 FunFam BHLH transcription factor 343 411 - -
Cam05g1414 538 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 347 396 IPR011598 GO:0046983(InterPro)
Cam05g1414 538 CDD bHLH_AtAMS_like 350 414 - -
Cam05g1414 538 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 350 415 IPR036638 GO:0046983(InterPro)
Cam05g1414 538 Coils Coil 390 410 - -
Cam05g1414 538 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 304 533 IPR051358 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Cam05g1414 538 MobiDBLite consensus disorder prediction 305 348 - -
Cam05g1414 538 Pfam Helix-loop-helix DNA-binding domain 354 396 IPR011598 GO:0046983(InterPro)
Cam05g1414 538 ProSiteProfiles ACT domain profile. 466 538 IPR002912 -
Cam05g1414 538 Gene3D - 341 410 IPR036638 GO:0046983(InterPro)
Cam05g1414 538 SMART finulus 353 402 IPR011598 GO:0046983(InterPro)
Cam05g1414 538 Pfam Plant bHLH transcription factor, ACT-like domain 455 528 IPR054502 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam03g0398 Cam-Chr3:5118781 Cam05g1414 Cam-Chr5:16542795 6.00E-139 dispersed
Cam05g1414 Cam-Chr5:16542795 Cam11g1503 Cam-Chr11:27865081 2.10E-32 dispersed
Cam05g1414 Cam-Chr5:16542795 Cam08g1649 Cam-Chr8:22691664 4.90E-34 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51948 PF00010 HLH 2.20E-09 No_clan Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam05g1414 - - - 0.0