Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cam05g1519 | ATGGATCCTAAAACTAAAACCTCATCAACAACCAAGCAGCCCCAAGAAGTGGTAGCCAACTTTTTGAAGCCCCCAGAAGAAGAAGAAGAAGAGCATCAAGAAGAAGTAGACGAAGAATCAATCATGGGTGAAAATAAAGCAGGTGAAATAAAAGATTTCCAAATAGCAATTGCAGAGAAAGAAGAGGGCAAAAAACAGTTAGCCCCAAAACGAAGCTCAAACAAAGACCGTCACACGAAAGTGGAAGGCAGAGGGCGAAGAATCCGGATGCCAGCTCTATGTGCCGCTAGGATTTTTCAATTAACGAGGGAATTGGGTCATAAATCCGACGGCGAGACCATCCAGTGGTTGCTGCAGCAGGCGGAGCCGTCTATAATCGCAGCCACGGGGACAGGAACCATTCCAGCTTCTGCTCTAGCGGCGGCGGCAGGTTCTGTTTCGCAACAGGGGGCTTCTCTGTCGGCCGGATTGCACCAAAAATTGGAGGAATTAGGAGGTGGGGGGTCCAGTAGGGCCAATTGGGGGAATTTGGGGAGACCCCATTTGGCCGCCACACCCTCAGGGCTTTGGCCCTCATCTGTCACTGGCTTTGGCTTTCACTCTTCAACTGCTTCTGCTGCTGCTGTTGCTGCTCAATCAGCCACTAATTTACCTAATGAAACTTCAAATTACTTTCATAAACTTGGTTTCCCACCTTTTGATTGTTCCCCCACCAACATGGGTCCTATGAGTTTCACCTCTATTTTAGGTGCAAACACTCAACAATTACCTGGTTTGGAGCTTGGATTGTCCCAAGATGGCCATATTGGGGTTCTAAATCCTCAGGCGCTCAACCAGATTTACCAACAGATGGGACAGCCTAGAGTTCATCAGCAGCATCATCATCAACACCACCACCAGCAGGCTCCTGCTAAGGATGATTCTCAAGATTCAGGCTAG | 939 | 48.46 | MDPKTKTSSTTKQPQEVVANFLKPPEEEEEEHQEEVDEESIMGENKAGEIKDFQIAIAEKEEGKKQLAPKRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGTGTIPASALAAAAGSVSQQGASLSAGLHQKLEELGGGGSSRANWGNLGRPHLAATPSGLWPSSVTGFGFHSSTASAAAVAAQSATNLPNETSNYFHKLGFPPFDCSPTNMGPMSFTSILGANTQQLPGLELGLSQDGHIGVLNPQALNQIYQQMGQPRVHQQHHHQHHHQQAPAKDDSQDSG | 312 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 19353250 | 19354188 | + | CaPI482276_05g015190.1 | Cam05g1519 | 126923 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cam05g1519 | 312 | MobiDBLite | consensus disorder prediction | 1 | 47 | - | - | |
Cam05g1519 | 312 | ProSiteProfiles | TCP domain profile. | 74 | 128 | IPR017887 | - | |
Cam05g1519 | 312 | MobiDBLite | consensus disorder prediction | 1 | 17 | - | - | |
Cam05g1519 | 312 | MobiDBLite | consensus disorder prediction | 285 | 312 | - | - | |
Cam05g1519 | 312 | PANTHER | TRANSCRIPTION FACTOR TCP4-RELATED | 9 | 297 | IPR005333 | GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0043565(PANTHER) | |
Cam05g1519 | 312 | Pfam | TCP family transcription factor | 73 | 179 | IPR017887 | - | |
Cam05g1519 | 312 | MobiDBLite | consensus disorder prediction | 61 | 83 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cam04g0941 | Cam-Chr4:23505971 | Cam05g1519 | Cam-Chr5:19353250 | 6.90E-29 | dispersed | |
Cam05g0925 | Cam-Chr5:8383632 | Cam05g1519 | Cam-Chr5:19353250 | 1.20E-25 | dispersed | |
Cam05g1519 | Cam-Chr5:19353250 | Cam06g0028 | Cam-Chr6:2124844 | 5.00E-55 | dispersed | |
Cam05g1519 | Cam-Chr5:19353250 | Cam04g1275 | Cam-Chr4:26628138 | 1.60E-29 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
51953 | PF03634 | TCP | 3.70E-31 | No_clan | Cam | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cam05g1519 | - | - | - | 0.0 |