Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam05g1519 ATGGATCCTAAAACTAAAACCTCATCAACAACCAAGCAGCCCCAAGAAGTGGTAGCCAACTTTTTGAAGCCCCCAGAAGAAGAAGAAGAAGAGCATCAAGAAGAAGTAGACGAAGAATCAATCATGGGTGAAAATAAAGCAGGTGAAATAAAAGATTTCCAAATAGCAATTGCAGAGAAAGAAGAGGGCAAAAAACAGTTAGCCCCAAAACGAAGCTCAAACAAAGACCGTCACACGAAAGTGGAAGGCAGAGGGCGAAGAATCCGGATGCCAGCTCTATGTGCCGCTAGGATTTTTCAATTAACGAGGGAATTGGGTCATAAATCCGACGGCGAGACCATCCAGTGGTTGCTGCAGCAGGCGGAGCCGTCTATAATCGCAGCCACGGGGACAGGAACCATTCCAGCTTCTGCTCTAGCGGCGGCGGCAGGTTCTGTTTCGCAACAGGGGGCTTCTCTGTCGGCCGGATTGCACCAAAAATTGGAGGAATTAGGAGGTGGGGGGTCCAGTAGGGCCAATTGGGGGAATTTGGGGAGACCCCATTTGGCCGCCACACCCTCAGGGCTTTGGCCCTCATCTGTCACTGGCTTTGGCTTTCACTCTTCAACTGCTTCTGCTGCTGCTGTTGCTGCTCAATCAGCCACTAATTTACCTAATGAAACTTCAAATTACTTTCATAAACTTGGTTTCCCACCTTTTGATTGTTCCCCCACCAACATGGGTCCTATGAGTTTCACCTCTATTTTAGGTGCAAACACTCAACAATTACCTGGTTTGGAGCTTGGATTGTCCCAAGATGGCCATATTGGGGTTCTAAATCCTCAGGCGCTCAACCAGATTTACCAACAGATGGGACAGCCTAGAGTTCATCAGCAGCATCATCATCAACACCACCACCAGCAGGCTCCTGCTAAGGATGATTCTCAAGATTCAGGCTAG 939 48.46 MDPKTKTSSTTKQPQEVVANFLKPPEEEEEEHQEEVDEESIMGENKAGEIKDFQIAIAEKEEGKKQLAPKRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGTGTIPASALAAAAGSVSQQGASLSAGLHQKLEELGGGGSSRANWGNLGRPHLAATPSGLWPSSVTGFGFHSSTASAAAVAAQSATNLPNETSNYFHKLGFPPFDCSPTNMGPMSFTSILGANTQQLPGLELGLSQDGHIGVLNPQALNQIYQQMGQPRVHQQHHHQHHHQQAPAKDDSQDSG 312
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 19353250 19354188 + CaPI482276_05g015190.1 Cam05g1519 126923
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam05g1519 312 MobiDBLite consensus disorder prediction 1 47 - -
Cam05g1519 312 ProSiteProfiles TCP domain profile. 74 128 IPR017887 -
Cam05g1519 312 MobiDBLite consensus disorder prediction 1 17 - -
Cam05g1519 312 MobiDBLite consensus disorder prediction 285 312 - -
Cam05g1519 312 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 9 297 IPR005333 GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0043565(PANTHER)
Cam05g1519 312 Pfam TCP family transcription factor 73 179 IPR017887 -
Cam05g1519 312 MobiDBLite consensus disorder prediction 61 83 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam04g0941 Cam-Chr4:23505971 Cam05g1519 Cam-Chr5:19353250 6.90E-29 dispersed
Cam05g0925 Cam-Chr5:8383632 Cam05g1519 Cam-Chr5:19353250 1.20E-25 dispersed
Cam05g1519 Cam-Chr5:19353250 Cam06g0028 Cam-Chr6:2124844 5.00E-55 dispersed
Cam05g1519 Cam-Chr5:19353250 Cam04g1275 Cam-Chr4:26628138 1.60E-29 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51953 PF03634 TCP 3.70E-31 No_clan Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam05g1519 - - - 0.0