Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam05g1519 ATGGATCCTAAAACTAAAACCTCATCAACAACCAAGCAGCCCCAAGAAGTGGTAGCCAACTTTTTGAAGCCCCCAGAAGAAGAAGAAGAAGAGCATCAAGAAGAAGTAGACGAAGAATCAATCATGGGTGAAAATAAAGCAGGTGAAATAAAAGATTTCCAAATAGCAATTGCAGAGAAAGAAGAGGGCAAAAAACAGTTAGCCCCAAAACGAAGCTCAAACAAAGACCGTCACACGAAAGTGGAAGGCAGAGGGCGAAGAATCCGGATGCCAGCTCTATGTGCCGCTAGGATTTTTCAATTAACGAGGGAATTGGGTCATAAATCCGACGGCGAGACCATCCAGTGGTTGCTGCAGCAGGCGGAGCCGTCTATAATCGCAGCCACGGGGACAGGAACCATTCCAGCTTCTGCTCTAGCGGCGGCGGCAGGTTCTGTTTCGCAACAGGGGGCTTCTCTGTCGGCCGGATTGCACCAAAAATTGGAGGAATTAGGAGGTGGGGGGTCCAGTAGGGCCAATTGGGGGAATTTGGGGAGACCCCATTTGGCCGCCACACCCTCAGGGCTTTGGCCCTCATCTGTCACTGGCTTTGGCTTTCACTCTTCAACTGCTTCTGCTGCTGCTGTTGCTGCTCAATCAGCCACTAATTTACCTAATGAAACTTCAAATTACTTTCATAAACTTGGTTTCCCACCTTTTGATTGTTCCCCCACCAACATGGGTCCTATGAGTTTCACCTCTATTTTAGGTGCAAACACTCAACAATTACCTGGTTTGGAGCTTGGATTGTCCCAAGATGGCCATATTGGGGTTCTAAATCCTCAGGCGCTCAACCAGATTTACCAACAGATGGGACAGCCTAGAGTTCATCAGCAGCATCATCATCAACACCACCACCAGCAGGCTCCTGCTAAGGATGATTCTCAAGATTCAGGCTAG 939 48.46 MDPKTKTSSTTKQPQEVVANFLKPPEEEEEEHQEEVDEESIMGENKAGEIKDFQIAIAEKEEGKKQLAPKRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGTGTIPASALAAAAGSVSQQGASLSAGLHQKLEELGGGGSSRANWGNLGRPHLAATPSGLWPSSVTGFGFHSSTASAAAVAAQSATNLPNETSNYFHKLGFPPFDCSPTNMGPMSFTSILGANTQQLPGLELGLSQDGHIGVLNPQALNQIYQQMGQPRVHQQHHHQHHHQQAPAKDDSQDSG 312
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 19353250 19354188 + CaPI482276_05g015190.1 Cam05g1519 126923

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam05g1519 312 MobiDBLite consensus disorder prediction 1 47 - -
Cam05g1519 312 ProSiteProfiles TCP domain profile. 74 128 IPR017887 -
Cam05g1519 312 MobiDBLite consensus disorder prediction 1 17 - -
Cam05g1519 312 MobiDBLite consensus disorder prediction 285 312 - -
Cam05g1519 312 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 9 297 IPR005333 GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0043565(PANTHER)
Cam05g1519 312 Pfam TCP family transcription factor 73 179 IPR017887 -
Cam05g1519 312 MobiDBLite consensus disorder prediction 61 83 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam05g1519 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam04g0941 Cam-Chr4:23505971 Cam05g1519 Cam-Chr5:19353250 6.90E-29 dispersed
Cam05g0925 Cam-Chr5:8383632 Cam05g1519 Cam-Chr5:19353250 1.20E-25 dispersed
Cam05g1519 Cam-Chr5:19353250 Cam06g0028 Cam-Chr6:2124844 5.00E-55 dispersed
Cam05g1519 Cam-Chr5:19353250 Cam04g1275 Cam-Chr4:26628138 1.60E-29 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cam01g0831 . 48 264 TCP Transcription Factor Family AT5G23280 63.4 4.1e-68 255.0
Cam02g1469 . 37 257 TCP Transcription Factor Family AT5G23280 60.3 1.9e-60 229.6
Cam06g0212 . 59 341 TCP Transcription Factor Family AT2G45680 54.1 1.4e-66 250.4
Cam05g2637 . 63 157 TCP Transcription Factor Family AT3G47620 89.7 8.4e-41 165.2
Cam04g1275 . 40 140 TCP Transcription Factor Family AT3G47620 82.2 1.6e-39 161.0
Cam11g1373 . 148 230 TCP Transcription Factor Family AT3G47620 90.4 1.3e-36 151.4
Cam11g1373 . 148 240 TCP Transcription Factor Family AT1G69690 82.8 1.4e-36 150.6
Cam05g1519 . 49 312 TCP Transcription Factor Family AT3G27010 57.0 3.1e-60 229.2
Cam02g1469 . 9 255 TCP Transcription Factor Family AT5G08330 56.7 4.5e-64 241.5
Cam01g0831 . 44 263 TCP Transcription Factor Family AT5G08330 62.2 8.5e-63 237.3
Cam06g1693 . 26 128 TCP Transcription Factor Family AT5G60970 74.0 6.9e-40 161.8
Cam07g1671 . 43 168 TCP Transcription Factor Family AT3G02150 62.1 1.3e-38 157.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003722 3 3 3 4 3 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 2 2 0 46
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51953 PF03634 TCP 3.70E-31 No_clan Cam TF