Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam05g1646 ATGGTATCCCCCGAAAATCCCAATTGGTTGTTTGATTATGGTTTGATCGACGACATCCCTGTACCGGATGCGAATTTCCCAGTCACGAGTTCAAGCTTCTCCTGGGCTATTCAGCCCTTTAACGGCATCCATGATACCGGTGTGGAAATTGAGGGATCATTGGCAGATCTGGATGACCGTCTAGAATCTGGCTCAAAAAAGAGGGTCAGATCTGATTCATGTAGTGCATCAAGCTCCAAAGCATGTAGGGAGAAATTGCGGAGGGATAGGCTCAATGACAAGTTTCTGGAACTGGGCTCCATTTTGGATCCTGGAAGACCGCCCAAAACTGACAAGGCTGCAATTTTAGTTGACGCGGTTCGAATGGTGAATCAGTTGCGTAGCGAAACCCAGAAACTAAAGGAATCAAATTCAAGTCTCCAGGAGAAGATTAAAGAGTTGAAGGCCGAGAAGAACGAGCTTCGTGACGAGAAGCAGAGGCTCAAGGCAGATAAGGAGAGGCTAGAGCAGCAAGTCAAGTCCATGCCTGCTCAACAACCGGGCTTCTTACCTCCACCAATCCCCACATTTGCTGCTCAGGGTCAAGCTCCTGGCAATAAGTTAGTTCCTTTCATTGGTTACCACCCAAGTGTTGCCATGTGGCAGTTCATGCCACCTGCTGCGGTGGACACGTCACAGGACCACGTACTCCGGCCACCTGTCGCATAA 708 49.29 MVSPENPNWLFDYGLIDDIPVPDANFPVTSSSFSWAIQPFNGIHDTGVEIEGSLADLDDRLESGSKKRVRSDSCSASSSKACREKLRRDRLNDKFLELGSILDPGRPPKTDKAAILVDAVRMVNQLRSETQKLKESNSSLQEKIKELKAEKNELRDEKQRLKADKERLEQQVKSMPAQQPGFLPPPIPTFAAQGQAPGNKLVPFIGYHPSVAMWQFMPPAAVDTSQDHVLRPPVA 235
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 24234879 24237195 - CaPI482276_05g016460.1 Cam05g1646 127050
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam05g1646 235 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 75 146 IPR036638 GO:0046983(InterPro)
Cam05g1646 235 Pfam Helix-loop-helix DNA-binding domain 79 127 IPR011598 GO:0046983(InterPro)
Cam05g1646 235 Gene3D - 65 124 IPR036638 GO:0046983(InterPro)
Cam05g1646 235 FunFam Transcription factor bHLH34 66 124 - -
Cam05g1646 235 Gene3D arf6 gtpase in complex with a specific effector, jip4 125 179 - -
Cam05g1646 235 CDD bZIP 141 173 - -
Cam05g1646 235 CDD bHLH_AtILR3_like 83 155 - -
Cam05g1646 235 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 75 126 IPR011598 GO:0046983(InterPro)
Cam05g1646 235 Coils Coil 123 178 - -
Cam05g1646 235 PANTHER BHLH TRANSCRIPTION FACTOR 8 235 IPR044818 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0006879(InterPro)|GO:0046983(InterPro)
Cam05g1646 235 SMART finulus 81 132 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g0861 Cam-Chr2:11349305 Cam05g1646 Cam-Chr5:24234879 2.30E-55 dispersed
Cam01g2074 Cam-Chr1:33802738 Cam05g1646 Cam-Chr5:24234879 1.10E-09 transposed
Cam02g1185 Cam-Chr2:23593294 Cam05g1646 Cam-Chr5:24234879 2.10E-11 transposed
Cam05g0496 Cam-Chr5:4389238 Cam05g1646 Cam-Chr5:24234879 1.00E-28 transposed
Cam10g0535 Cam-Chr10:7883624 Cam05g1646 Cam-Chr5:24234879 7.00E-78 wgd
Cam03g0514 Cam-Chr3:5988877 Cam05g1646 Cam-Chr5:24234879 9.20E-46 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51955 PF00010 HLH 1.10E-09 No_clan Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam05g1646 - - - 0.0