Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam05g1650 ATGGTTGGAACGCCAACTAATGGAAGGGCTCGCTTGTCCTTCTCGTTGGTTAATGGTGGACAGGAACTTTGTCTTACAAGTACTCCCACCAGCATTGCAGGCTCCGATTGCGGTGGCATTGAGTTCACTAAAGAAGATGTTGAAGCTTTGTTGAATGAGAAGCTTAAAAGGAAGGACAGGTTTAATCTAAAGGTCAGTCCCTCCTTTTCAGCAGTTAAGGAAAAATGTGATAACATGGTGGAATACATTAAAAAGCTTAAACTCTGCATCAAATGGTTCCAAGAGCTTGAATATAGCTACTTATTAGAGCAGAAGAAGTTACAAGATGAGTTGGAATCTTCTGAGATCAAGTGCAGTGAAATGGAAATGATAGTGAAGAAGAAAGAGGAAGAATTGAATTCTATCATTGCGGAACTCAGAAAGAACAATGCTTTTTTGCAAGAGAAATTCACAAAAGAAGAATCAGATAAGTTGGCTGCAGTAGAATCTCTCACCAAGGAGAAAGAGGCTAGGTTGATTATGGAGAGGTCACAGGCTTCAATCTCTGAGGAGCTTACAAGGGCTCAACGTGAGCTCTCGAGTGCAAATCAAAAGATATCGTCTCTTAATGAGATGTACAAGCGGTTACAGGATTACATTACTAGTTTACAGCAATATAATGGCAAGCTTCATACAGAGCTTTCAACTGCTGAGGATGACCTGAAACGCGTAGAGAAAGAAAAAGCTGCTGTGGTGGAGGACCTCAGTATGATCAAGGGTGAACTTGCTCTGTCTAAAGCATCTCAAGATGAGGCAGTAAAGCAGAAGGATGCTATGGTGAACGAAGTTACGTGTTTAAGAAGAGAAATACAACAGGTTAGAGATGATCGAGATCGCCAACTATCTCTGGTTCAGACTTTGTCAGATGAAGTAGAGAAGTGCAGAGAGTCTGCAGGAAAGTACTGTGAGGAGCTGGATGAAATGAAGGCAAAAGCAAATGAATTAGAGGCAACATGTTCTTCACAAAGCACTGAGCTAAGGGCATTGCAAAATCATCTAGCTGCTGCAGAAAACAAGCTGCAGGTCTCTGATCTAACTGCAATGGAGACAATGCATGAATTCGAAGATCAAAAGAGACTTGTACTCGAGTTACAACAGCGACTTGCAGATGCAGAAAATAAGCTTATGGAAGGAGAGAAGCTTCGGAAAAAATTGCACAATACTATCTTGGAATTAAAAGGAAACATTCGTGTATTTTGTCGAGTGCGACCTCTGTTACCTGATGAACGTTCTAGTCCTGAAGGCAATTTTATCTCCTATCCGTCATCAGTGGAATCTCTTGGACGAGGAATCGATCTGGTGCAAAATGGTCAAAGACATTCTTTCACATATGACAAGGTTTTTGCACCAGAAGCGACACAGGAAGACATCTTCGTAGAAATTTCCCAGCTCGTACAAAGTGCCCTTGATGGTTATAAGGTTTGCATATTTGCCTACGGTCAAACTGGTTCGGGAAAAACCTATACGATGATGGGTCGACCAGGGCTCCTTGAAGAGAAGGGACTGATACCTCGATCGTTGGAACAAATATTTCAAACTAGGCAATCTCTTCAACCTCAGGGTTGGAAATATGAAATGCAGGTATCGATGTTGGAAATATACAATGAAACAATCCGTGATTTACTATCAACAAATCGATCAACTCCAGATGTGCTTCGAGCAGAAAATGGTTCTCCTATAAAACCTTACTCAATCAAACACGATGCAAGTGGAAATACTCAAGTTTCTGATCTTACAGTCGTGGATGTTCGTAGTGCCAGGGAGGTCTCATTTCTATTAGAGCAAGCTTCTCGTAGCAGATCCGTTGGCAAAACTCAAATGAACGAGCAATCATCAAGAAGTCATTTTGTGTTCACTCTCAAAATATCTGGTATCAATGAGAGTACTGATCAACAAGTACAAGGGATTTTGAATTTAATTGATCTTGCTGGGAGTGAGCGTCTTTCCAAAAGCGGGTCGACAGGAGATCGACTGAAAGAAACCCAAGCCATAAATAGAAGTTTATCATCTTTAAGTGATGTTATATTTGCTTTGGCAAAGAAGGAAGAGCATGTTCCATTTAGAAACTCCAAGCTTACCTATCTTCTTCAGCCATGTCTCGGTGGAGATTCAAAGACGTTGATGTTTGTAAATATCTCTCCTGATTCCTCCTCGGCCAGTGAATCACTCTGCTCGCTTCGCTTTGCTGCCCGGGTTAATGCTTGTGAGATCGGTACTCCTCGGCGTCTAACCAATACACGACCTTAA 2286 41.64 MVGTPTNGRARLSFSLVNGGQELCLTSTPTSIAGSDCGGIEFTKEDVEALLNEKLKRKDRFNLKVSPSFSAVKEKCDNMVEYIKKLKLCIKWFQELEYSYLLEQKKLQDELESSEIKCSEMEMIVKKKEEELNSIIAELRKNNAFLQEKFTKEESDKLAAVESLTKEKEARLIMERSQASISEELTRAQRELSSANQKISSLNEMYKRLQDYITSLQQYNGKLHTELSTAEDDLKRVEKEKAAVVEDLSMIKGELALSKASQDEAVKQKDAMVNEVTCLRREIQQVRDDRDRQLSLVQTLSDEVEKCRESAGKYCEELDEMKAKANELEATCSSQSTELRALQNHLAAAENKLQVSDLTAMETMHEFEDQKRLVLELQQRLADAENKLMEGEKLRKKLHNTILELKGNIRVFCRVRPLLPDERSSPEGNFISYPSSVESLGRGIDLVQNGQRHSFTYDKVFAPEATQEDIFVEISQLVQSALDGYKVCIFAYGQTGSGKTYTMMGRPGLLEEKGLIPRSLEQIFQTRQSLQPQGWKYEMQVSMLEIYNETIRDLLSTNRSTPDVLRAENGSPIKPYSIKHDASGNTQVSDLTVVDVRSAREVSFLLEQASRSRSVGKTQMNEQSSRSHFVFTLKISGINESTDQQVQGILNLIDLAGSERLSKSGSTGDRLKETQAINRSLSSLSDVIFALAKKEEHVPFRNSKLTYLLQPCLGGDSKTLMFVNISPDSSSASESLCSLRFAARVNACEIGTPRRLTNTRP 761
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 24286221 24290212 - CaPI482276_05g016500.1 Cam05g1650 127054

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam05g1650 761 Gene3D Kinesin motor domain 354 750 IPR036961 -
Cam05g1650 761 FunFam Kinesin-like protein 354 750 - -
Cam05g1650 761 CDD KISc_C_terminal 406 750 - -
Cam05g1650 761 PRINTS Kinesin heavy chain signature 649 667 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cam05g1650 761 PRINTS Kinesin heavy chain signature 618 635 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cam05g1650 761 PRINTS Kinesin heavy chain signature 698 719 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cam05g1650 761 PRINTS Kinesin heavy chain signature 484 505 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cam05g1650 761 Coils Coil 367 401 - -
Cam05g1650 761 Coils Coil 111 156 - -
Cam05g1650 761 Coils Coil 269 289 - -
Cam05g1650 761 Coils Coil 311 359 - -
Cam05g1650 761 Pfam Kinesin motor domain 414 747 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cam05g1650 761 PANTHER KINESIN-LIKE PROTEIN KLP-3 279 755 IPR027640 GO:0003777(InterPro)|GO:0007018(InterPro)
Cam05g1650 761 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 366 746 IPR027417 -
Cam05g1650 761 Coils Coil 220 247 - -
Cam05g1650 761 SMART kinesin_4 406 756 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cam05g1650 761 Coils Coil 178 212 - -
Cam05g1650 761 ProSiteProfiles Kinesin motor domain profile. 408 748 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam05g1650 K27887 - - csv:101215636 1391.71
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam05g1650 Cam-Chr5:24286221 Cam09g2186 Cam-Chr9:36372603 2.20E-72 dispersed
Cam02g1639 Cam-Chr2:29408905 Cam05g1650 Cam-Chr5:24286221 2.80E-78 transposed
Cam03g1649 Cam-Chr3:31594681 Cam05g1650 Cam-Chr5:24286221 3.20E-64 transposed
Cam03g1765 Cam-Chr3:32728552 Cam05g1650 Cam-Chr5:24286221 6.70E-64 transposed
Cam04g0417 Cam-Chr4:15622704 Cam05g1650 Cam-Chr5:24286221 1.00E-27 transposed
Cam07g1087 Cam-Chr7:25342920 Cam05g1650 Cam-Chr5:24286221 4.50E-82 transposed
Cam10g0008 Cam-Chr10:1710687 Cam05g1650 Cam-Chr5:24286221 8.20E-69 transposed
Cam10g1096 Cam-Chr10:23887881 Cam05g1650 Cam-Chr5:24286221 4.40E-75 transposed
Cam10g1634 Cam-Chr10:30172575 Cam05g1650 Cam-Chr5:24286221 5.50E-67 transposed
Cam03g0516 Cam-Chr3:5997210 Cam05g1650 Cam-Chr5:24286221 2.80E-231 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g417 Blo03g00584 . Bda07g00337 . . . . . . . Cma01g01154 Cma09g00922 . Car09g00838 . Cpe06g00742 Cpe02g00747 Bhi09g01950 . . . . . . . . . . . . . Cone6ag0089 Cone9ag0105 . . Lsi04g01248 . . . . . . . Bpe11g00523 . . Bma14g00358 . Cmo01g01207 Cmo09g00919 . . . Car16g00566 . . . . . . . . . Cla05g01542 Cam05g1650 Cec05g1655 Cco05g1694 Clacu05g1643 Cmu05g1538 Cre05g1648 . . . Cme04g00801
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006975 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 0 1 1 34