Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam05g1653 ATGAATCTAACTTCTAACCTTGAGCTTTTGTCCAACAACGAAATTCCGCCTTCTTTCCAACGCGTTTGGTCAAATGTTTGTAACGTCGCCCAATTCTTCGACCTTCTTTTGGTGGATCTGGTCAGAATCGGAGACCCATTGGAGGCCTTTCCACTCCGCTTACTTTTGATTTTCTGTCAAAAATGGGATTGCATTATGCGATTCTGTTTCTTTCAAGGGTTTTCTTCTTGCCCTTTTCCCCAATTCTTTCTCGGATTTTGTTTTGATCATTGGGATTCGTCATCTTCCAGCTATGTTTTCCGATTTTTATCACAAATTCTTCTTGGGTTTGCTCAGGGATTTTTGTTTACTTGTTGTCTTTTGACGTTCTGGGATTTCGAGGCAACTTGCTTGAAGGACCACGAGGAAGAGGAACTGATTCTGAGTCAACTAGCTGACCCAATTACTGGGGATGTCAACACAGAGATGGCTGAGCTGTTACTTGTTAAGTGCAACTTGGATTTGTTTCAGTTAAAGGAAGCTGCAGATGGTACTGACCTATGCTTTGAAGAAAGACCTGGAAGCAAAAATGGAATTAATTTTGAATGTCGGATGCTGACAAAAGAGAAAACAAACAGAATGCTAAGGGCCATGCATCCCCAGATGAAGCAGACTCTTTTAGATTGTTTAAGAAAGAATTTTCATGTCTCTGGGAAAGACTACAACTCTGAAGCTTGGTACACCAGGTATCTAGAGTCATTGTTTTTAATGCCTGGTAGTCTTAGAAGGAAGTTAAGTTCTAGATGGCTTCGAAGTTCTAAAGAAGTGCCTGCTCCGGCACCTGAATCTTCAGCAGATGAAAAACCTTCAAGAAAAGCTTCTAGCACAAGTGGTCAAAAAGAAAAGAAATCTAATAATCAACAAACAGTCATCATCGCTGTTGTTGTAACAGCAACAGTGACTTTTATTATTGTAGCTCTGCTATTTTTATGCTATAATAAAAGTGGTTCCAGAGTGAAGCAAAATGATGAAAATCATGAAAGGCCTCTCCTAAGCTTGAGTTTAAGTTCTTCGCCCAAATATTCTGCCTTTGGGAATTCTCTTAAGGATGACAAGTTCATGAGTCAATCATCTAGCTTGAGTCACCACCAGAGAGCTCCATCTTTGGATGGTAACCTGCACATTGTCTCTGATGGTGCACGTACTTCAATGCAGGGACCTCCGTCTTTTGGAGCTACTGGAATTCCGAATAATTCATCTTTTGGATCAACAAATATGGCTGGCAGTACTAAGGGTTTGGTGCCACCTCCTCCAGGAGCAGTACCAGTCACCCCAGAAATCATACCTCCTTTGAAGCCTCCTCCTGGCAGGGCTGTTCCCCTGCCTCCTGAACGCCCTTCGTCTTTTAAGCCTCCATCCAACATGGCTAGTCCTCCTCCTCCTCCTCCTCCTCCACCTGCTGCTGCTGCTGCTGCAGCAGCAGCACCACCACCACCACCACCAAGACCTCCTGGAAATTCATGTCGCCCTCCAGGACCTCCTCCACCTCCACCACCTGCACCAGGCAAAGCAGGCCCTCGCCCACCACCACCTCCCAAAAGTGGTATTGCTCCTCCTCGGCCACCTCCATTAGCACCCAAAGGTGCAAATCCACCTCGACCTCCAAAGCCTTTTGCTTCAGGTGATGATGATATGGACGAATCAGGTGTTCCCAAAGCCAAATTGAAACCATTTTTCTGGGACAAAGTTCTTGCAAACCCCGACCATTCCATGGTCTGGCATCAGATAAAAGCAGGGTCTTTCCAATTCAATGAGGAGATGATAGAAACTCTTTTTGGATATACGCCTGTAGATAAAACCAAAACTGAGGGCAAGAAGGAGTCATCATCACAAGATCCTGCACAGCAGTACATTCAGATCATTGATTCAAAGAAAGCACAAAATCTTTCCATTCTTTTGCGAGCACTAAATGTGACAAAAGAAGAAGTCTGTGATGCGCTTCATGAAGGGACTGAACTTCCTTCTGAACTTCTTGAGAACTTACTGAGGATGGCACCAACTCCAGAAGAAGAACTCAAGCTTAGACTGTTTAGTGGGGAACTTTCTCAACTTGGAAATGCTGAGCGGTTCCTTAAATCTTTGGTTGATATCCCATTTGCTTTCAAAAGGTTGGAATCGCTGCTTTTCATGGGCACTCTTCAGGAGGACATCACCATCACTAAAGAGTCCTTTGCTAATTTGGAGGTTGCTTGCAAGGAACTTCGGAGCAGCAGGTTGTTCCTCAAACTTCTAGAAGCTGTTCTAAAGACAGGCAATCGAATGAACGATGGGACTTTTCGAGGTGGTGCACAAGCATTCAAATTGGACACTCTTTTAAAATTGTCGGATGTGAAAGGAAAAGATGGCAAGACTACGTTATTGCACTTTGTAGTTCAGGAGATAATTCGCACAGAAGGGATAAGAGCTGTTCGGAATGCCACAGGAAGCCAGAGCTTCTCAAGCACCTCATCAAAGGATCTGCTGGATGGATCTCCTAACGACCCCGAGGAGCATTACCGTACCTTGGGTCTTCAGGTTGTCTCGGGGCTGAGTGGTGAACTTCAGAATGTGAAGAAAGCAGCAACCATTGATGCAGATGCGTTGACTGGAACTGTTTCCAAACTTGGCCATGCACTGTTAAAGACAAGAGACTTTCTGAACAAAGACATGCAGGGTTTAGGTGAAGAGAGCCCATTTCATGATGCACTGAAAGTCTTTGTGCAGAGTGCTGAGGTTGATATCATGGCCCTCCTGGAAGAAGAAAAAAGAATCATGGAGTTGGTGAAAAGCACGGGCGACTACTTCCATGGAAATGCAGGGAAGGACGAGGGCTTACGGTTGTTTGTAATCGTACGAGATTTCTTGATAATGATAGATAAGACGTGCCGAGAAATAAAGGATGCACAGAAAAAGCAAGCGAAGGGACACAGAAAGGCAGCGTCGTCTTCTGATATCCATCACCCCCTTTCGTCATCTTCTGATATCAATCAGCCCCCTTTGTTGTCTACTGATACCAATCACCCCCCTTCGTCGTCTACCGATACCAGTCATCCCCCTTCGTCATCTACCGATACCAATCACCCCCCATCATCGTCTACCGATACCAATCAGCCCCCATCGTCGTCTACCGATACCAATCACCCCCCTTCATCGTCTACTAATATCAATCACCCCCCTTCAACTACAGCTTCTGATCTACGACACCCCCCTTCTCCTGATTTGAATCAGCTGATTTTCCCAGCAATTATTGATCGTCGGATGGGCAACTCAAGTTCAGACGATGATGATGAAAGTCCGTAG 3318 45.06 MNLTSNLELLSNNEIPPSFQRVWSNVCNVAQFFDLLLVDLVRIGDPLEAFPLRLLLIFCQKWDCIMRFCFFQGFSSCPFPQFFLGFCFDHWDSSSSSYVFRFLSQILLGFAQGFLFTCCLLTFWDFEATCLKDHEEEELILSQLADPITGDVNTEMAELLLVKCNLDLFQLKEAADGTDLCFEERPGSKNGINFECRMLTKEKTNRMLRAMHPQMKQTLLDCLRKNFHVSGKDYNSEAWYTRYLESLFLMPGSLRRKLSSRWLRSSKEVPAPAPESSADEKPSRKASSTSGQKEKKSNNQQTVIIAVVVTATVTFIIVALLFLCYNKSGSRVKQNDENHERPLLSLSLSSSPKYSAFGNSLKDDKFMSQSSSLSHHQRAPSLDGNLHIVSDGARTSMQGPPSFGATGIPNNSSFGSTNMAGSTKGLVPPPPGAVPVTPEIIPPLKPPPGRAVPLPPERPSSFKPPSNMASPPPPPPPPPAAAAAAAAAPPPPPPRPPGNSCRPPGPPPPPPPAPGKAGPRPPPPPKSGIAPPRPPPLAPKGANPPRPPKPFASGDDDMDESGVPKAKLKPFFWDKVLANPDHSMVWHQIKAGSFQFNEEMIETLFGYTPVDKTKTEGKKESSSQDPAQQYIQIIDSKKAQNLSILLRALNVTKEEVCDALHEGTELPSELLENLLRMAPTPEEELKLRLFSGELSQLGNAERFLKSLVDIPFAFKRLESLLFMGTLQEDITITKESFANLEVACKELRSSRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTLLKLSDVKGKDGKTTLLHFVVQEIIRTEGIRAVRNATGSQSFSSTSSKDLLDGSPNDPEEHYRTLGLQVVSGLSGELQNVKKAATIDADALTGTVSKLGHALLKTRDFLNKDMQGLGEESPFHDALKVFVQSAEVDIMALLEEEKRIMELVKSTGDYFHGNAGKDEGLRLFVIVRDFLIMIDKTCREIKDAQKKQAKGHRKAASSSDIHHPLSSSSDINQPPLLSTDTNHPPSSSTDTSHPPSSSTDTNHPPSSSTDTNQPPSSSTDTNHPPSSSTNINHPPSTTASDLRHPPSPDLNQLIFPAIIDRRMGNSSSDDDDESP 1105
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 24377382 24384285 + CaPI482276_05g016530.1 Cam05g1653 127057

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam05g1653 1105 MobiDBLite consensus disorder prediction 819 835 - -
Cam05g1653 1105 PANTHER FORMIN-RELATED 267 1101 IPR027643 GO:0003779(InterPro)|GO:0030036(InterPro)|GO:0045010(InterPro)|GO:0051015(InterPro)
Cam05g1653 1105 MobiDBLite consensus disorder prediction 819 840 - -
Cam05g1653 1105 SMART it6_source 558 978 IPR015425 -
Cam05g1653 1105 Pfam Formin Homology 2 Domain 564 963 IPR015425 -
Cam05g1653 1105 SUPERFAMILY Formin homology 2 domain (FH2 domain) 629 985 - -
Cam05g1653 1105 MobiDBLite consensus disorder prediction 396 563 - -
Cam05g1653 1105 MobiDBLite consensus disorder prediction 990 1075 - -
Cam05g1653 1105 Gene3D Formin, FH2 domain 563 993 IPR042201 -
Cam05g1653 1105 MobiDBLite consensus disorder prediction 975 1105 - -
Cam05g1653 1105 MobiDBLite consensus disorder prediction 396 423 - -
Cam05g1653 1105 MobiDBLite consensus disorder prediction 428 551 - -
Cam05g1653 1105 MobiDBLite consensus disorder prediction 265 297 - -
Cam05g1653 1105 ProSiteProfiles Formin homology-2 (FH2) domain profile. 558 990 IPR015425 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam05g1653 K28090 - - csv:101213072 930.628
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g0859 Cam-Chr2:11321420 Cam05g1653 Cam-Chr5:24377382 3.00E-156 dispersed
Cam05g1653 Cam-Chr5:24377382 Cam07g0241 Cam-Chr7:3554759 1.10E-101 dispersed
Cam05g1653 Cam-Chr5:24377382 Cam06g1735 Cam-Chr6:28639645 5.00E-25 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g414 Blo03g00585 Blo03g01433 Bda07g00336 Bda09g00382 . Bpe08g01143 . . . . Cma01g01155 Cma09g00921 . Car09g00837 . Cpe06g00740 Cpe02g00746 Bhi09g01953 . . . Hepe01g1315 . . . . . . . . . . Cone9ag0106 . . Lsi04g01249 . Chy04g01020 . . . . . Bpe11g00522 . Bma07g01317 Bma14g00359 . Cmo01g01208 Cmo09g00918 . . . Car16g00567 . . . . . . . . . Cla05g01545 Cam05g1653 Cec05g1657 Cco05g1695 Clacu05g1644 Cmu05g1539 Cre05g1650 . . . Cme04g00799
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cam07g0241 . 180 1054 FH2 protein (formin) Gene Family AT3G25500 51.8 1.1e-191 667.5
Cam11g0100 . 451 927 FH2 protein (formin) Gene Family AT3G25500 66.9 1.6e-166 583.9
Cam02g1267 . 442 898 FH2 protein (formin) Gene Family AT3G25500 60.1 8.1e-142 501.9
Cam03g1721 . 496 893 FH2 protein (formin) Gene Family AT3G25500 51.7 3.0e-104 377.1
Cam07g0241 . 617 1071 FH2 protein (formin) Gene Family AT2G43800 60.3 5.3e-142 502.3
Cam02g1267 . 476 914 FH2 protein (formin) Gene Family AT2G43800 55.1 9.1e-126 448.4
Cam02g0859 . 279 591 FH2 protein (formin) Gene Family AT4G15200 52.1 3.2e-50 196.4
Cam05g1653 . 552 698 FH2 protein (formin) Gene Family AT4G15200 66.7 3.4e-47 186.4
Cam05g1653 . 553 989 FH2 protein (formin) Gene Family AT5G54650 69.2 3.3e-168 589.3
Cam02g0859 . 452 908 FH2 protein (formin) Gene Family AT5G54650 63.2 4.1e-158 555.8
Cam07g0241 . 628 1029 FH2 protein (formin) Gene Family AT5G54650 50.8 2.9e-103 373.6
Cam02g1267 . 31 917 FH2 protein (formin) Gene Family AT5G67470 58.2 9.8e-237 817.0
Cam07g0241 . 609 1071 FH2 protein (formin) Gene Family AT5G67470 58.9 9.7e-136 481.5
Cam11g0100 . 464 909 FH2 protein (formin) Gene Family AT5G67470 60.6 8.5e-132 468.4
Cam03g1721 . 496 895 FH2 protein (formin) Gene Family AT5G67470 50.9 8.9e-105 378.6
Cam05g2691 . 348 832 FH2 protein (formin) Gene Family AT1G59910 52.6 2.5e-126 450.3
Cam07g0241 . 649 1030 FH2 protein (formin) Gene Family AT5G48360 52.6 4.0e-101 366.3
Cam02g1267 . 500 875 FH2 protein (formin) Gene Family AT5G48360 50.5 1.6e-89 327.8
Cam02g1267 . 480 874 FH2 protein (formin) Gene Family AT3G05470 52.0 3.6e-106 383.3
Cam05g1653 . 558 972 FH2 protein (formin) Gene Family AT3G05470 50.6 4.6e-106 382.9
Cam07g0233 . 962 1273 FH2 protein (formin) Gene Family AT1G42980 51.1 2.0e-69 259.6
Cam07g0233 . 1 1277 FH2 protein (formin) Gene Family AT1G31810 67.9 0.0e+00 1225.3
Cam06g1369 . 1 1244 FH2 protein (formin) Gene Family AT1G31810 50.6 6.9e-241 831.2
Cam06g1735 . 1401 1722 FH2 protein (formin) Gene Family AT5G07650 74.8 1.6e-129 460.7
Cam04g1237 . 980 1290 FH2 protein (formin) Gene Family AT5G07650 70.4 1.1e-119 427.9
Cam05g1798 . 1088 1410 FH2 protein (formin) Gene Family AT5G07650 65.0 3.6e-110 396.4
Cam06g1369 . 934 1244 FH2 protein (formin) Gene Family AT5G07650 63.3 6.8e-109 392.1
Cam07g0233 . 946 1277 FH2 protein (formin) Gene Family AT5G07650 59.6 4.4e-108 389.4
Cam06g1735 . 1328 1715 FH2 protein (formin) Gene Family AT5G07770 69.2 1.5e-140 496.9
Cam04g1237 . 903 1290 FH2 protein (formin) Gene Family AT5G07770 63.2 2.9e-128 456.1
Cam05g1798 . 1012 1402 FH2 protein (formin) Gene Family AT5G07770 59.4 1.2e-118 424.1
Cam06g1369 . 857 1245 FH2 protein (formin) Gene Family AT5G07770 57.3 4.3e-116 415.6
Cam07g0233 . 882 1271 FH2 protein (formin) Gene Family AT5G07770 55.2 3.6e-115 412.5
Cam05g1798 . 1004 1410 FH2 protein (formin) Gene Family AT3G32400 76.2 1.3e-169 593.2
Cam06g1369 . 864 1245 FH2 protein (formin) Gene Family AT3G32400 69.8 6.8e-147 517.7
Cam06g1735 . 1328 1722 FH2 protein (formin) Gene Family AT3G32400 65.2 8.6e-142 500.7
Cam07g0233 . 882 1276 FH2 protein (formin) Gene Family AT3G32400 65.5 1.2e-140 496.9
Cam04g1237 . 873 1293 FH2 protein (formin) Gene Family AT3G32400 58.1 8.0e-132 467.6
Cam05g1798 . 1 1410 FH2 protein (formin) Gene Family AT2G25050 51.5 0.0e+00 1155.6
Cam06g1369 . 1 1245 FH2 protein (formin) Gene Family AT2G25050 51.6 4.4e-290 994.6
Cam06g1735 . 1329 1722 FH2 protein (formin) Gene Family AT5G07780 63.0 1.7e-123 439.9
Cam04g1237 . 904 1293 FH2 protein (formin) Gene Family AT5G07780 58.1 2.1e-113 406.4
Cam05g1798 . 1013 1403 FH2 protein (formin) Gene Family AT5G07780 54.3 3.3e-103 372.5
Cam07g0233 . 883 1272 FH2 protein (formin) Gene Family AT5G07780 52.0 1.1e-101 367.5
Cam06g1369 . 864 1245 FH2 protein (formin) Gene Family AT5G07780 54.1 2.4e-101 366.3
Cam06g1735 . 1 1731 FH2 protein (formin) Gene Family AT5G07740 59.3 0.0e+00 1119.8
Cam06g1735 . 1400 1729 FH2 protein (formin) Gene Family AT5G07760 74.4 3.2e-128 456.4
Cam04g1237 . 979 1293 FH2 protein (formin) Gene Family AT5G07760 69.6 2.6e-117 420.2
Cam06g1369 . 933 1245 FH2 protein (formin) Gene Family AT5G07760 65.3 1.2e-109 394.8
Cam05g1798 . 1087 1419 FH2 protein (formin) Gene Family AT5G07760 64.0 2.0e-109 394.0
Cam07g0233 . 956 1277 FH2 protein (formin) Gene Family AT5G07760 60.1 5.0e-105 379.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001056 4 3 4 4 4 2 4 2 2 2 2 2 4 2 2 3 2 4 4 2 2 2 2 2 3 2 2 3 3 2 81