Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam05g1661 ATGCAATCTTTTTACCAAAATCCAGGACATGTCGGTAATTTCAGACAATACCATTTTTCCCTTTGCGTTATAGAAGAGTTCCCAATCGCCCAAAAGCTCTCCTTTTCTGTCCAAGTTTTTCTTCGCCTCTTCCAGAAAGGGTTTAGTAGCTTAAACCCCAAGGCCATGGCTCTCAGATCGGCGGCGGCGGCGGCTCCTCGGAGTTTGAGGCGGCTCATTACAGGTACTTCAACTCGTACTCTACCGATAATCTCCCATGCTATTCATGATTGGGAGAAACCGGAACCCAGCACGAACGCTTTCCTTTCTGGCCGCTTGTTTTCTAGCGCTTCTACTTCCAGTTTCATTCCTCCGCCGCTCCCTCCATCGGCTCAGCAGCGTGAGATGCCTGAGCCTAGTACTAACCTTTTCGTTTCCGGGCTCAGTAAACGCACTACTACTGAAAAACTTCATGAAGCCTTCGCAAAGTTTGGAGAAGTTGTTCATGCACGAGTTGTGACTGATCGAGTGACTGGATATTCTAAAGGATTTGGCTTTGTTAAATATGCCACTTTGGAGGATGCGGCTAAAGGCATAGAGGGCATGGATGGCAAGTTCCTCGATGGTTGGGTTATATTTGCTGAGTATGCGAGGCCAAGACCACCTCCCGGGAACAATGGTTTTCCAAATGGCAGTCAATGA 681 48.02 MQSFYQNPGHVGNFRQYHFSLCVIEEFPIAQKLSFSVQVFLRLFQKGFSSLNPKAMALRSAAAAAPRSLRRLITGTSTRTLPIISHAIHDWEKPEPSTNAFLSGRLFSSASTSSFIPPPLPPSAQQREMPEPSTNLFVSGLSKRTTTEKLHEAFAKFGEVVHARVVTDRVTGYSKGFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPGNNGFPNGSQ 226
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 24524391 24526993 - CaPI482276_05g016610.1 Cam05g1661 127065

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam05g1661 226 Gene3D - 121 226 IPR012677 -
Cam05g1661 226 SUPERFAMILY RNA-binding domain, RBD 116 220 IPR035979 GO:0003676(InterPro)
Cam05g1661 226 Pfam RNA recognition motif 136 202 IPR000504 GO:0003723(InterPro)
Cam05g1661 226 FunFam RNA recognition motif-containing protein 113 224 - -
Cam05g1661 226 SMART rrm1_1 135 208 IPR000504 GO:0003723(InterPro)
Cam05g1661 226 PANTHER NUCLEOLAR PROTEIN 8 130 212 - GO:0003723(PANTHER)|GO:0005739(PANTHER)|GO:0080156(PANTHER)
Cam05g1661 226 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 134 212 IPR000504 GO:0003723(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam05g1661 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam05g1661 Cam-Chr5:24524391 Cam10g2064 Cam-Chr10:34419707 6.40E-28 dispersed
Cam05g1661 Cam-Chr5:24524391 Cam10g1836 Cam-Chr10:32472821 4.00E-14 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g394 . . . Bda09g00380 . Bpe08g01145 . . . . Cma01g01162 Cma09g00914 . Car09g00831 Sed14g0466 Cpe06g00736 Cpe02g00740 Bhi09g01960 Tan01g4493 Cmetu08g1286 . Hepe01g1323 Mch11g1137 . . . . . . . . . . . Cone15ag1130 Lsi04g01255 . Chy04g01029 . . . . . . . Bma07g01319 Bma14g00366 . Cmo01g01216 Cmo09g00908 . . . Car16g00574 . . . . . . . . . Cla05g01553 Cam05g1661 Cec05g1666 Cco05g1706 Clacu05g1655 Cmu05g1549 Cre05g1661 . . . Cme04g00784
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005243 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 2 40