Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam05g1677 ATGCTCAAAAAGACAAAAATGGCAAATGCTTCACTAACTCTGTTTCTGTCTCTGTCTCTGTTTCTCTTCTCTTCACCGTCTGTGGCTGTTGATTTCATAATTTCCTCACAAAACCTCACCCATGGCGCCACTCTTATCTCCGCAAAAGAATTTTTTGAACTGGGTTTCTTCAGCCCAAGAAATTCCACCAACCGTTACTTGGGCATTTGGTACAAAATCATCCCAGTTCGTACAATCGTTTGGGTCGCCAACAGAGAAAACCCCATCACTAATTCTTCCGCTGCTGTCGTTCTCAAAATCAACACCACCACCAGCGATCTCCTCCTTTTTGAGAACGACGCCGTTGTTTGGGTTGGAAAATCGTTGAAACCAGTAAAAACCCCCAAACTACACCTCTTAGACAATGGAAATCTGGTGTTGAAAGACGCTGAATCAGAGAAAATTTCATGGCAAAGCTTCGATTACCCAACGGATACATTACTTCCCGGAATGAAACTCGGATGGGACTTCGAAAATGGAATCCAACGCCGATTATCCGCTTGGAAATCCTCCGATGACCCATCTCCAGGGAGTTTAACGATGGAAATGATGAACACAAACTACCCAGAACCAGCGATGTGGAATGGGTCGAAAGAGTTCATGAGAAGCGGACCATGGAACGGCCTTCAATTCAGCGCAAAACCCACATCGGCTTTACCCATTTTAGTGTACAGCTATGTAAACAACAAATCCGAGCTCACTTACAGCTACGAGCTCATAAACTCTTCGTTAATCGGAAGAATGGTGTTGAATCAAACGCTATTCAGAAGAGAAGCTTGGTTATGGTCTGCATCGGAGAATATTTGGAAGCTGTATGCGACTATGCCGAGGGATTACTGCGATACTTACGGACTTTGTGGTGCGTTTGGGAGCTGTGACATTGAGCAAGTGCCTGCTTGTCAATGTCTAAGAGGGTTTCATCCTAAAGTACAAGAGAAATGGAATTTGATGGATTATACTGAAGGGTGTGTGAGGAATAAGGCTTTGAATTGTTCTGAGAAAACTGGGTTTGCAAAGCTTCCGGGGTTGAAATTGCCTGATACAAAGCAGTCTTGGGTTAATGAAAGTATGAGTTTGAATGAATGTAGAGATAAGTGTTTGAGGAATTGTTCTTGTGTGGCGTTTGCTAATACTGATATTAGAGGACCAGGGAGTGGTTGTGCTATTTGGTTTGGGGATCTTGTTGATATCAAAGTTGTTCGAAAAGGAGGCCAGGATTTGTATGTTAGAATGTTGGCTTCTGAATTGGAGACAAATAAGACGAGTTCGGTTGTCGTCGGCGTTATCGTCGGAGCGGCGATTCTGGCGATTGCTGGTCTGGCTTTGATTGGGTTTTACCTTATTAGAAGCAGGAGGAGAAGTCTCGAAGGTGTAGGCAAGGATCTGGAAGGGCAAGAAGAAGATTTGGAGCTCCCAATAGTCGACTTAACGACAATATCTAATGCCACAGACAATTTTTCGAACTCCAACAAGCTTGGAGAAGGTGGTTTTGGTGCAGTCTTTCGGGGTAGACTTGGAGATGGACAAGAAATTGCAGTTAAGAGACTTTCTAGCTATTCAAGACAAGGGACTGATGAATTCAAGAATGAAGTGATACTCATTGCCAAACTTCAACATAGAAATCTTGTAAAACTTTTGGGTTGTTGCATACAAGGAGAGGAAAAGATGTTGATTTATGAGTACATGCCTAATAAGAGTTTGGACTCCTTCATTTTTGATCCGGCTAGAAAGAAGCTTTTGGATTGGTCGAAAAGATTCAATATCATATGCGGAATAGCTCGAGGGATTCTTTACCTTCATCAAGATTCGAGATTGAGGATTATACATAGAGATTTAAAAGCAAGCAATGTCTTGCTTGATATTGACATGAATCCAAAAATCTCGGATTTTGGAATGGCTAGAACGTTTGGAGGGGACCAAACCGAAGGAAATACTAGGAGAGTGGTCGGAACATATGGGTATATGGCACCAGAGTACGCCATTGATGGGCAATTTTCCATCAAGTCAGACGTCTTCAGTTTTGGAATATTATTGTTGGAAATCATAAGTGGAGAGAAGAATAGAGGGTTTTTTCGTCCTAATCATGCTTTGAACCTGATTGGACATGCATGGAAGTTATGGAATGAAGGGAAGCCATTAGAGTTGATTGATGCAACCATTGGAGAATCTTATGCTCTATCTGAAGTGTTGAGATGCATTCATGTTAGCCTCTTGTGCTTGCAACAACTTCCCGAGGATAGACCAACCATGTCAAATGTAGTTCTAATGCTAAGTAGTGAGAGCTCATTGCCACAACCAAAACAACCAGGATTTTACATGGAAAGAGATTCTCTTGAAGCATTTTCTCTTGATGGCAAGAATGAATCTTCTACTACCAATGAATTAACTATTACCCTCTTGGAGGCTAGATAA 2451 42.06 MLKKTKMANASLTLFLSLSLFLFSSPSVAVDFIISSQNLTHGATLISAKEFFELGFFSPRNSTNRYLGIWYKIIPVRTIVWVANRENPITNSSAAVVLKINTTTSDLLLFENDAVVWVGKSLKPVKTPKLHLLDNGNLVLKDAESEKISWQSFDYPTDTLLPGMKLGWDFENGIQRRLSAWKSSDDPSPGSLTMEMMNTNYPEPAMWNGSKEFMRSGPWNGLQFSAKPTSALPILVYSYVNNKSELTYSYELINSSLIGRMVLNQTLFRREAWLWSASENIWKLYATMPRDYCDTYGLCGAFGSCDIEQVPACQCLRGFHPKVQEKWNLMDYTEGCVRNKALNCSEKTGFAKLPGLKLPDTKQSWVNESMSLNECRDKCLRNCSCVAFANTDIRGPGSGCAIWFGDLVDIKVVRKGGQDLYVRMLASELETNKTSSVVVGVIVGAAILAIAGLALIGFYLIRSRRRSLEGVGKDLEGQEEDLELPIVDLTTISNATDNFSNSNKLGEGGFGAVFRGRLGDGQEIAVKRLSSYSRQGTDEFKNEVILIAKLQHRNLVKLLGCCIQGEEKMLIYEYMPNKSLDSFIFDPARKKLLDWSKRFNIICGIARGILYLHQDSRLRIIHRDLKASNVLLDIDMNPKISDFGMARTFGGDQTEGNTRRVVGTYGYMAPEYAIDGQFSIKSDVFSFGILLLEIISGEKNRGFFRPNHALNLIGHAWKLWNEGKPLELIDATIGESYALSEVLRCIHVSLLCLQQLPEDRPTMSNVVLMLSSESSLPQPKQPGFYMERDSLEAFSLDGKNESSTTNELTITLLEAR 816
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 24956488 24960687 - CaPI482276_05g016770.1 Cam05g1677 127081
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam05g1677 816 Pfam Protein tyrosine and serine/threonine kinase 502 767 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam05g1677 816 Pfam D-mannose binding lectin 78 182 IPR001480 -
Cam05g1677 816 Gene3D Hepatocyte Growth Factor 340 425 - -
Cam05g1677 816 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 343 424 - -
Cam05g1677 816 CDD PAN_AP_plant 342 423 - -
Cam05g1677 816 Gene3D - 27 153 IPR036426 -
Cam05g1677 816 Gene3D Transferase(Phosphotransferase) domain 1 575 781 - -
Cam05g1677 816 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 575 778 - -
Cam05g1677 816 Pfam PAN-like domain 344 410 IPR003609 -
Cam05g1677 816 Pfam Domain of unknown function (DUF3403) 771 816 IPR021820 GO:0004674(InterPro)
Cam05g1677 816 SUPERFAMILY alpha-D-mannose-specific plant lectins 79 187 IPR036426 -
Cam05g1677 816 ProSitePatterns Serine/Threonine protein kinases active-site signature. 620 632 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam05g1677 816 ProSitePatterns Protein kinases ATP-binding region signature. 505 527 IPR017441 GO:0005524(InterPro)
Cam05g1677 816 SMART blect_4 36 156 IPR001480 -
Cam05g1677 816 ProSiteProfiles Bulb-type lectin domain profile. 30 153 IPR001480 -
Cam05g1677 816 SMART serkin_6 499 770 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam05g1677 816 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 30 784 - -
Cam05g1677 816 SUPERFAMILY Protein kinase-like (PK-like) 484 770 IPR011009 -
Cam05g1677 816 PIRSF SRK 3 816 IPR024171 GO:0004674(InterPro)
Cam05g1677 816 ProSiteProfiles Protein kinase domain profile. 499 776 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam05g1677 816 Gene3D Phosphorylase Kinase; domain 1 470 574 - -
Cam05g1677 816 Pfam S-locus glycoprotein domain 215 322 IPR000858 GO:0048544(InterPro)
Cam05g1677 816 CDD STKc_IRAK 505 770 - -
Cam05g1677 816 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 464 574 - -
Cam05g1677 816 CDD B_lectin 39 156 IPR001480 -
Cam05g1677 816 SMART ntp_6 345 424 IPR003609 -
Cam05g1677 816 ProSiteProfiles PAN/Apple domain profile. 344 425 IPR003609 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g0158 Cam-Chr2:2627622 Cam05g1677 Cam-Chr5:24956488 1.40E-77 dispersed
Cam03g0499 Cam-Chr3:5912313 Cam05g1677 Cam-Chr5:24956488 5.80E-78 dispersed
Cam03g0511 Cam-Chr3:5972569 Cam05g1677 Cam-Chr5:24956488 7.90E-103 dispersed
Cam03g0512 Cam-Chr3:5981094 Cam05g1677 Cam-Chr5:24956488 5.70E-93 dispersed
Cam03g0537 Cam-Chr3:6221188 Cam05g1677 Cam-Chr5:24956488 1.60E-214 dispersed
Cam03g0538 Cam-Chr3:6229228 Cam05g1677 Cam-Chr5:24956488 1.20E-196 dispersed
Cam03g0542 Cam-Chr3:6274398 Cam05g1677 Cam-Chr5:24956488 3.90E-179 dispersed
Cam04g1140 Cam-Chr4:25477286 Cam05g1677 Cam-Chr5:24956488 1.60E-95 dispersed
Cam05g1677 Cam-Chr5:24956488 Cam10g0584 Cam-Chr10:8981569 7.90E-270 dispersed
Cam05g1677 Cam-Chr5:24956488 Cam05g1682 Cam-Chr5:25130878 1.90E-27 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85191 PF07714 PK_Tyr_Ser-Thr 4.00E-48 CL0016 Cam PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam05g1677 - - - 0.0