Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam05g1700 ATGTCACCGCCGGCCAGGACCAAAAGCTGGAACGGCGGCCTCGATAAACACTATCCTCCACCGCTTACCACCCACGATGAAGTTATTTCCGACCCCATTGTTTTTTGGGACACGTTGAGGCGTTTCCATTTTATGATGAACACAAAGTTCATGATTCCTGTGATTGGAGGGAAGGAGCTAGACTTGCATGTTTTATATTCAGAAGTCACAAGAAGAGGAGGACATGAAAAGGTTGTTGCAGAGAAGAAATGGAGAGAAGTTGGAAGTGTGTTTAAGTTTTCTCCTACAACAACGAGTGCTTCATTTGTATTGAGAAAACATTATCTAAGTCTTCTTTACCATTACGAGCAAGTTTACTTGTTCGGCCGGCAGGGCCCCATCTGTGTCCCTCAAGCGCCATTTTCTTTTGGTAGCCCTACCAGTGAAAACGAATTGGCTCTTGTGGAATATACCCCCAAAACTACGTCGTTTTCGCCTGGTCCGCCTGCTGAAGTTACTGGAACAATTGATGGGAAATTCGACTGTGGTTACCTGGTGACTGTGAAATTGGGATCTGAGGTTCTAAGAGGAGTTCTTTACCATCCAGAGCAGCCACCTCCCTCGGATCTCCGGCCTCAGTCTACCAATGCCATTGTACCGTATACCGGCGGCAGACATCGATATTCTGGTAGGCGGCACCGGAGGAGCCGGAGAAAGGGAGATCCGAACCACCCAAAACCAAACAGAAGTGGGTATAATTTCTTCTTTGCAGAGAAGCATTACAAGCTCAAATCTCTGTACCCAAACAGAGAAAGGGAGTTCACTAAGATGATTGGAGAGTCTTGGAACAATCTTAGCCCTGAAGAAAGGATGGTTTATCAAAACATTGGGTTGAAAGACAAGGAAAGATACAAGCGAGAGTTGAAAGAGTATAAGGAGAAAATGAGGCAGGCAACCGATGTTGATGGAGCTAACTATTCAAAACATGGGGACTAG 975 45.85 MSPPARTKSWNGGLDKHYPPPLTTHDEVISDPIVFWDTLRRFHFMMNTKFMIPVIGGKELDLHVLYSEVTRRGGHEKVVAEKKWREVGSVFKFSPTTTSASFVLRKHYLSLLYHYEQVYLFGRQGPICVPQAPFSFGSPTSENELALVEYTPKTTSFSPGPPAEVTGTIDGKFDCGYLVTVKLGSEVLRGVLYHPEQPPPSDLRPQSTNAIVPYTGGRHRYSGRRHRRSRRKGDPNHPKPNRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWNNLSPEERMVYQNIGLKDKERYKRELKEYKEKMRQATDVDGANYSKHGD 324
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 25317589 25319187 + CaPI482276_05g017000.1 Cam05g1700 127104
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam05g1700 324 CDD ARID_HMGB9-like 31 116 IPR045303 GO:0003677(InterPro)
Cam05g1700 324 MobiDBLite consensus disorder prediction 196 244 - -
Cam05g1700 324 Pfam ARID/BRIGHT DNA binding domain 35 116 IPR001606 GO:0003677(InterPro)
Cam05g1700 324 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 238 305 IPR009071 -
Cam05g1700 324 Coils Coil 294 314 - -
Cam05g1700 324 Pfam HMG (high mobility group) box 238 305 IPR009071 -
Cam05g1700 324 Gene3D High mobility group box domain 222 318 IPR036910 -
Cam05g1700 324 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 16 316 - -
Cam05g1700 324 SMART bright_3 30 121 IPR001606 GO:0003677(InterPro)
Cam05g1700 324 CDD HMG-box_AtHMGB9-like 238 304 - -
Cam05g1700 324 SMART ARID_2 26 116 - -
Cam05g1700 324 SUPERFAMILY ARID-like 25 128 IPR036431 GO:0003677(InterPro)
Cam05g1700 324 Gene3D - 25 126 IPR036431 GO:0003677(InterPro)
Cam05g1700 324 SMART hmgende2 237 306 IPR009071 -
Cam05g1700 324 MobiDBLite consensus disorder prediction 219 235 - -
Cam05g1700 324 SUPERFAMILY HMG-box 235 309 IPR036910 -
Cam05g1700 324 ProSiteProfiles ARID domain profile. 29 120 IPR001606 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam05g1700 Cam-Chr5:25317589 Cam06g0806 Cam-Chr6:11102735 5.00E-74 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51957 PF01388 ARID 3.00E-18 CL0123 Cam TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam05g1700 - - - 0.0