Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cam05g1704 | ATGGCTATGGATGATACCGAGAGCTGTAGTAGTAGACCGGCGGATGATTTTTCGGCTCAGACTTGGAGACAGAAGCAGAAGGTTGGTGTTTACGACGAAGTTCTTCGTCGACTCAGGCTGTCGCACGAAGCGGAGACCAGCCTTCCTGGTTTCGAGGATGAACTTTGGACTCATTTTCATCGACTTCCTGCTAGGTATGCTATGGACGTCAACGTAGAGAGGGCTGAAGATGTTCTCATGCACAAAAATCTTCTCTACATGGCACATGATCCTGCTACTCGACCAGCTATTGATGTCCGTCTCGTACAGGTTCATTCATCTCCTGGCAGAAACTTTGGCAAGTCCGTTCATTCAAACTTGAAGGAAAAAGTAAACCAGCGGTTTTCTGGTTATGACAGCAATCAGAGACATCACCCCCCACCAGCATTTGGTTCAACAACAGAGGTCGAATATAGTTTTGAGACCAACCAATTACATGATATAGACCAACCTGGCACTTTCTCCTGGCCAATGCATGAAATTACAATATCAACAATTGACAAGCCAAAACTGCTCAGTCAGTTGACGTCCTTACTTTCTGAGATTGGGCTGAATATTCAAGAAGCGCATGCTTTTTCAACAACAGATGGCTTTTCCTTGGATGTTTTTGTAGTTGATGGTTGGGCAATTGAGGATACCAAGCAGCTAAAAGATATACTCGCAGAAGAAATATCAAAGATTCAGAAAAGGCATCCTCTATTTACACCTTGCATCTTCCGTACTGGGAAGCAAGACAAAATTGGAATCCAGTTCATCACAAAGTATGTCAACATTCCGAGGGACGAAGTTGATGAATGGGAAATTGATGCAACCCTGCTAGTCTTTGAGAAGAAAATTGCGTCTGGATCTCTTAGTGACTTGTATAAAGGCACCTTCTATGGTCAAGATGTGGCTATTAAGGTTCTAAAAGATGAAAACTTGAACGAGACTGTACGGCGGGAATTTGCTCAAGAAATTCATATCATGAGAAAACTTCGGCATAAGAATGTTGTCCAATTTATTGGTGCATCTACCAGGCCTCCACACTTTTTCATTGTTACAGAATACATGTCTGGTGGAAGCATACACGACTTTTTACATCAACAAAAGGGTGTTCTTAGTTTTCCTTCCTTACTAAGAGTGGCAGTTGACGTGTCCAAGGGAATGAACTATTTGCATCAAAAGAATATCATTCATAGAGATCTGAAAGCTGCAAATCTTTTGATGGATGAAGATGGGGTTGTCAAGGTAGCTGATTTTGGTGTTGCTAGAGTGCAAGCTCAATCTGGTGTGATGACTGCAGAAACTGGAACATACCGTTGGATGGCTCCAGAGGTTATTGAGCACAAACCATATGATCGTAAAGCTGATGTTTATAGCTTTGGGATAGTGTTGTGGGAGCTGCTTACAGGACAGCTGCCTTATGAGAACTTGACTCCGTTACAAGCAGCAATTGGCGTGGTCCAGAAGGGTCTGAGGCCTAAGATTCCGAGGTATGCTCATCCAATGATCGTGGATTTGCTCAAGAAATGCTGGCTGCAGGATCCATCTTTGAGACCCGAATTCTCAGAAATTACGAGACTTCTACAGCAGACATTGCTGAAGGAGGCACTTCACGTTCCTGGAACAGATTATATAATAAGAAACTTGGGAGTGACAGGTACCATCTGGAAGATGATAAAAAAATTTGGGCTGGAGAGGACGTTCTATGGAGGAGCAAGGATACGCCTACCGTGCTAG | 1758 | 43.4 | MAMDDTESCSSRPADDFSAQTWRQKQKVGVYDEVLRRLRLSHEAETSLPGFEDELWTHFHRLPARYAMDVNVERAEDVLMHKNLLYMAHDPATRPAIDVRLVQVHSSPGRNFGKSVHSNLKEKVNQRFSGYDSNQRHHPPPAFGSTTEVEYSFETNQLHDIDQPGTFSWPMHEITISTIDKPKLLSQLTSLLSEIGLNIQEAHAFSTTDGFSLDVFVVDGWAIEDTKQLKDILAEEISKIQKRHPLFTPCIFRTGKQDKIGIQFITKYVNIPRDEVDEWEIDATLLVFEKKIASGSLSDLYKGTFYGQDVAIKVLKDENLNETVRREFAQEIHIMRKLRHKNVVQFIGASTRPPHFFIVTEYMSGGSIHDFLHQQKGVLSFPSLLRVAVDVSKGMNYLHQKNIIHRDLKAANLLMDEDGVVKVADFGVARVQAQSGVMTAETGTYRWMAPEVIEHKPYDRKADVYSFGIVLWELLTGQLPYENLTPLQAAIGVVQKGLRPKIPRYAHPMIVDLLKKCWLQDPSLRPEFSEITRLLQQTLLKEALHVPGTDYIIRNLGVTGTIWKMIKKFGLERTFYGGARIRLPC | 585 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 25378121 | 25387912 | - | CaPI482276_05g017040.1 | Cam05g1704 | 127108 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cam05g1704 | 585 | Coils | Coil | 223 | 243 | - | - | |
Cam05g1704 | 585 | Pfam | Protein tyrosine and serine/threonine kinase | 287 | 534 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cam05g1704 | 585 | SUPERFAMILY | Protein kinase-like (PK-like) | 267 | 534 | IPR011009 | - | |
Cam05g1704 | 585 | CDD | STKc_MAP3K-like | 292 | 535 | - | - | |
Cam05g1704 | 585 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 403 | 415 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cam05g1704 | 585 | Gene3D | Phosphorylase Kinase; domain 1 | 273 | 364 | - | - | |
Cam05g1704 | 585 | Gene3D | - | 171 | 244 | - | - | |
Cam05g1704 | 585 | SUPERFAMILY | ACT-like | 171 | 238 | IPR045865 | - | |
Cam05g1704 | 585 | ProSiteProfiles | ACT domain profile. | 173 | 249 | IPR002912 | - | |
Cam05g1704 | 585 | SMART | serkin_6 | 286 | 540 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cam05g1704 | 585 | ProSiteProfiles | Protein kinase domain profile. | 286 | 540 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cam05g1704 | 585 | PRINTS | Tyrosine kinase catalytic domain signature | 462 | 484 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cam05g1704 | 585 | PRINTS | Tyrosine kinase catalytic domain signature | 443 | 453 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cam05g1704 | 585 | PRINTS | Tyrosine kinase catalytic domain signature | 506 | 528 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cam05g1704 | 585 | PRINTS | Tyrosine kinase catalytic domain signature | 397 | 415 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cam05g1704 | 585 | PRINTS | Tyrosine kinase catalytic domain signature | 360 | 373 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cam05g1704 | 585 | PANTHER | SERINE-THREONINE PROTEIN KINASE | 155 | 539 | IPR050167 | GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER) | |
Cam05g1704 | 585 | FunFam | Serine/threonine-protein kinase isoform 1 | 276 | 364 | - | - | |
Cam05g1704 | 585 | Gene3D | Transferase(Phosphotransferase) domain 1 | 365 | 547 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cam01g0206 | Cam-Chr1:2356533 | Cam05g1704 | Cam-Chr5:25378121 | 4.20E-25 | dispersed | |
Cam03g0708 | Cam-Chr3:7946365 | Cam05g1704 | Cam-Chr5:25378121 | 2.10E-41 | dispersed | |
Cam05g0138 | Cam-Chr5:1609226 | Cam05g1704 | Cam-Chr5:25378121 | 1.20E-26 | dispersed | |
Cam05g0554 | Cam-Chr5:4914326 | Cam05g1704 | Cam-Chr5:25378121 | 3.20E-19 | dispersed | |
Cam05g1704 | Cam-Chr5:25378121 | Cam10g0041 | Cam-Chr10:2046164 | 8.40E-181 | dispersed | |
Cam08g0911 | Cam-Chr8:13792166 | Cam05g1704 | Cam-Chr5:25378121 | 7.00E-11 | dispersed | |
Cam05g1704 | Cam-Chr5:25378121 | Cam01g1435 | Cam-Chr1:27902183 | 1.30E-67 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
85193 | PF07714 | PK_Tyr_Ser-Thr | 6.60E-72 | CL0016 | Cam | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cam05g1704 | - | - | - | 0.0 |