Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam05g1732 ATGGATGTGAACGCCAATAAACCTTTGCAATTTTTTCGAAGAAGTTCGTCTCAGAAGGAAACTGAAAATGGAGGTCAAGTTATGGTTGAGATTAGCAGCGTTGAAAATGGCTACTCTGTACCGAAGCAAAACAGAGTCGATTCGCAGACCAAAGAGCCGGCCGATTCAAGCATTGGCTATGGCTACGATTCACCACTCGCTCCCACTGCGAATAAGCCACCGAAAATCCCTAGTTCAAATGGAACCCTCACGCCCAGAAAATCTCTCAGAAGATCAATCCTCTCGAAACCCAAATCCAGATTTGGGGACCAGCCTGGTTATATCGATTCAGACATGTTTGAGGAGAATCATTTGTCGTTGAGAGATCAAATCGGTGCAACTTCATCCAGAAGCTCTACTCTCAACACGCCGAAGGCTCAACCTGAGGAAGAAGATGATGAGGAAATCTTCAAGATAGAGCAGTTGAATAATAAGCATAAGAAAGTGAAGGTGAAGACAGTGATTAAGTGGGTTGGAGTTTTTTGCATAATTGGTTGCTTGGTGGCTAGCTTGACTGTTAACCCTTTGAAGAATCGCTTCCTTTGGGGTTTAAGGGTTTGGAAATGGTGTTTACTTGCTACTGTGATTTTGTGTGGAATGATATTTACTCATTGGGTTATGAATGTGATTGTATTTTTGATCGAGAGGAACTTTTTGCTTAAGAAAAAAGTACTTTATTTTGTTCATGGGTTGAAGAAGAGTGTTCAAGTGACCCTTTGGTTGACATTGGTTCTTGTTACATGGGGGTCCTTGTTCGATCGGAGAAACCATACAATTCCGAGTTCAAGGATCACTACAAAGATTTTGGATGCTGTTACATGGACTCTGGTTAGCCTTCTTATAGGAGCATTCTTGTGGTTGGTAAAAACACTGTTGCTGAAAATACTGGCCTCTAAGTTCCATATGAACCGATTTTTCGACAGAATTCAGGAATCCATTTTCCATCATCATGTTCTACAAACTCTCTCAAGGCCTCCATTAATGGAGGGAGCTGAAATTACTCCCAAATCCAGCAGTGGTAGACTGAGTTTGAAGAGTAAAAAATCAGACCGTAAAAAGGTGATTGACATGGGAAAGATTCACCAACTGAAGCGAGAGAAGGTTTCAGCTTGGACAATGAAGGTATTGGTTGATGCAGTTACTAGTTCAGAGATGTCGATCTCACAAATACTTGATGAAAGCTACCAAGATGTTGCTGATGGCGAGATCACAGATGAGATGGAAGTTGCCAGAGCCGCTGCATACAAGATATTCAACAATGTTGCTCTTCATGGAAACAAGTTCATAGAGGAAGAGGATCTTCTGAGATTCATGATCAAAGAAGAAGTTGATCTTGTGTTACCACACTTTGAGGTAGATGAGACAAGGAAAATTGACAGGAAAGCTCTAACAAATTGGGTGGTGAAGGTTTATCAAGGGAGAAAAACTCTAGCACATGCCTTGAAAGACACTAAAACAGCTGTGAGGCAATTGAATAATTTAGTAACGGCGCTTCTTATAATAGTAACCGCTGTTATTTGGCTTCTGTTGATGGAAATTGCTACTACCAAAGTACTTGTCTTCCTTCTAACTCAACTTGCAGTGGCAGCTTTCATGTTTGGAAACTCTTGCAAGACTGCATTTGAAGCTCTAATCTTTGTGTTTGTTATGCATCCATTTGATGTTGGGGACCGTTGTGCCGTTGATGGCGTCCAGCTGTTGGTTGAAGAAATGAACATCTTGACGACAGTCTTCTTGAAACTCAACAATGAGAAGGTGTATTATCCCAACTCAGTTTTGGCAACAAAGCCCATCACTAACTACTACAGAAGTCCAGACATGGGCGACACTGTTGAATTCTCAATCGGTTTCTCAACGCCATTGGAGAGGATTGGGCTCTTGAAAGAGAAAATAAAGAGGTATTTGGAGAAGAATCCACAACATTGGCATCCAAATCATAGTGTGGTGGTGCAGGAGATTGAAAGTGTGAATAAGATAAAGATCGCTCTTTATACGAACCACACCATGAATTTTCAAGACTGGACTGAGAAGAACCGACGAAGAACCGAGCTCGTGATGGAGTTGAAGAGAATTTTTGAAGAACTGAAGATCAACTACAATCTTCTGCCTCAAACAGTACATCTCTTCCCAGTTGAGGGCACTGAAGTCTACAGAAGATCTTGA 2202 41.46 MDVNANKPLQFFRRSSSQKETENGGQVMVEISSVENGYSVPKQNRVDSQTKEPADSSIGYGYDSPLAPTANKPPKIPSSNGTLTPRKSLRRSILSKPKSRFGDQPGYIDSDMFEENHLSLRDQIGATSSRSSTLNTPKAQPEEEDDEEIFKIEQLNNKHKKVKVKTVIKWVGVFCIIGCLVASLTVNPLKNRFLWGLRVWKWCLLATVILCGMIFTHWVMNVIVFLIERNFLLKKKVLYFVHGLKKSVQVTLWLTLVLVTWGSLFDRRNHTIPSSRITTKILDAVTWTLVSLLIGAFLWLVKTLLLKILASKFHMNRFFDRIQESIFHHHVLQTLSRPPLMEGAEITPKSSSGRLSLKSKKSDRKKVIDMGKIHQLKREKVSAWTMKVLVDAVTSSEMSISQILDESYQDVADGEITDEMEVARAAAYKIFNNVALHGNKFIEEEDLLRFMIKEEVDLVLPHFEVDETRKIDRKALTNWVVKVYQGRKTLAHALKDTKTAVRQLNNLVTALLIIVTAVIWLLLMEIATTKVLVFLLTQLAVAAFMFGNSCKTAFEALIFVFVMHPFDVGDRCAVDGVQLLVEEMNILTTVFLKLNNEKVYYPNSVLATKPITNYYRSPDMGDTVEFSIGFSTPLERIGLLKEKIKRYLEKNPQHWHPNHSVVVQEIESVNKIKIALYTNHTMNFQDWTEKNRRRTELVMELKRIFEELKINYNLLPQTVHLFPVEGTEVYRRS 733
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 25888696 25891532 + CaPI482276_05g017320.1 Cam05g1732 127136

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam05g1732 733 MobiDBLite consensus disorder prediction 73 89 - -
Cam05g1732 733 Gene3D - 565 614 IPR023408 -
Cam05g1732 733 MobiDBLite consensus disorder prediction 126 146 - -
Cam05g1732 733 MobiDBLite consensus disorder prediction 9 55 - -
Cam05g1732 733 MobiDBLite consensus disorder prediction 1 107 - -
Cam05g1732 733 PIRSF Memb_At2g17000 6 733 IPR016688 -
Cam05g1732 733 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 51 721 IPR016688 GO:0005886(PANTHER)|GO:0006820(PANTHER)|GO:0008381(PANTHER)|GO:0050982(PANTHER)
Cam05g1732 733 Pfam Mechanosensitive ion channel, beta-domain 558 615 IPR006685 GO:0016020(InterPro)|GO:0055085(InterPro)
Cam05g1732 733 FunFam Predicted mechanosensitive ion channel 565 614 - -
Cam05g1732 733 SUPERFAMILY Sm-like ribonucleoproteins 554 614 IPR010920 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam05g1732 K22048 - - csv:101217197 1158.28
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g1162 Cam-Chr2:22735526 Cam05g1732 Cam-Chr5:25888696 1.80E-137 dispersed
Cam03g1541 Cam-Chr3:30366165 Cam05g1732 Cam-Chr5:25888696 3.70E-184 dispersed
Cam05g1732 Cam-Chr5:25888696 Cam06g0949 Cam-Chr6:14322974 3.70E-149 dispersed
Cam05g1731 Cam-Chr5:25849936 Cam05g1732 Cam-Chr5:25888696 1.40E-299 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cam05g0167 . 240 630 Mechanosensitive Ion Channel Family AT4G00290 67.3 9.8e-154 540.4
Cam08g1624 . 15 656 Mechanosensitive Ion Channel Family AT5G10490 58.5 1.3e-196 683.3
Cam10g0719 . 92 765 Mechanosensitive Ion Channel Family AT5G10490 55.4 7.9e-191 664.1
Cam08g1624 . 15 636 Mechanosensitive Ion Channel Family AT1G58200 58.0 2.7e-199 692.2
Cam10g0719 . 80 542 Mechanosensitive Ion Channel Family AT1G58200 65.2 6.4e-172 601.3
Cam02g1162 . 43 928 Mechanosensitive Ion Channel Family AT1G53470 54.9 8.1e-260 893.6
Cam02g0406 . 91 952 Mechanosensitive Ion Channel Family AT1G53470 51.2 1.2e-239 826.6
Cam02g1162 . 43 926 Mechanosensitive Ion Channel Family AT3G14810 52.8 9.8e-247 850.1
Cam02g1162 . 47 928 Mechanosensitive Ion Channel Family AT1G78610 58.5 1.8e-280 962.2
Cam02g0406 . 59 952 Mechanosensitive Ion Channel Family AT1G78610 55.8 1.3e-270 929.5
Cam02g1162 . 226 928 Mechanosensitive Ion Channel Family AT2G17000 61.4 4.1e-237 818.1
Cam02g0406 . 266 950 Mechanosensitive Ion Channel Family AT2G17000 57.7 3.7e-222 768.5
Cam02g1162 . 1 675 Mechanosensitive Ion Channel Family AT2G17010 50.1 7.0e-163 571.2
Cam05g1732 . 69 721 Mechanosensitive Ion Channel Family AT5G19520 53.0 3.0e-183 639.0
Cam05g1732 . 64 721 Mechanosensitive Ion Channel Family AT5G12080 58.2 3.7e-202 701.8
Cam03g1541 . 58 750 Mechanosensitive Ion Channel Family AT5G12080 53.7 6.6e-199 691.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002739 1 4 1 1 1 2 2 2 2 3 2 2 1 3 3 1 2 3 1 2 3 1 0 2 2 2 1 6 1 0 57