Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam05g1732 ATGGATGTGAACGCCAATAAACCTTTGCAATTTTTTCGAAGAAGTTCGTCTCAGAAGGAAACTGAAAATGGAGGTCAAGTTATGGTTGAGATTAGCAGCGTTGAAAATGGCTACTCTGTACCGAAGCAAAACAGAGTCGATTCGCAGACCAAAGAGCCGGCCGATTCAAGCATTGGCTATGGCTACGATTCACCACTCGCTCCCACTGCGAATAAGCCACCGAAAATCCCTAGTTCAAATGGAACCCTCACGCCCAGAAAATCTCTCAGAAGATCAATCCTCTCGAAACCCAAATCCAGATTTGGGGACCAGCCTGGTTATATCGATTCAGACATGTTTGAGGAGAATCATTTGTCGTTGAGAGATCAAATCGGTGCAACTTCATCCAGAAGCTCTACTCTCAACACGCCGAAGGCTCAACCTGAGGAAGAAGATGATGAGGAAATCTTCAAGATAGAGCAGTTGAATAATAAGCATAAGAAAGTGAAGGTGAAGACAGTGATTAAGTGGGTTGGAGTTTTTTGCATAATTGGTTGCTTGGTGGCTAGCTTGACTGTTAACCCTTTGAAGAATCGCTTCCTTTGGGGTTTAAGGGTTTGGAAATGGTGTTTACTTGCTACTGTGATTTTGTGTGGAATGATATTTACTCATTGGGTTATGAATGTGATTGTATTTTTGATCGAGAGGAACTTTTTGCTTAAGAAAAAAGTACTTTATTTTGTTCATGGGTTGAAGAAGAGTGTTCAAGTGACCCTTTGGTTGACATTGGTTCTTGTTACATGGGGGTCCTTGTTCGATCGGAGAAACCATACAATTCCGAGTTCAAGGATCACTACAAAGATTTTGGATGCTGTTACATGGACTCTGGTTAGCCTTCTTATAGGAGCATTCTTGTGGTTGGTAAAAACACTGTTGCTGAAAATACTGGCCTCTAAGTTCCATATGAACCGATTTTTCGACAGAATTCAGGAATCCATTTTCCATCATCATGTTCTACAAACTCTCTCAAGGCCTCCATTAATGGAGGGAGCTGAAATTACTCCCAAATCCAGCAGTGGTAGACTGAGTTTGAAGAGTAAAAAATCAGACCGTAAAAAGGTGATTGACATGGGAAAGATTCACCAACTGAAGCGAGAGAAGGTTTCAGCTTGGACAATGAAGGTATTGGTTGATGCAGTTACTAGTTCAGAGATGTCGATCTCACAAATACTTGATGAAAGCTACCAAGATGTTGCTGATGGCGAGATCACAGATGAGATGGAAGTTGCCAGAGCCGCTGCATACAAGATATTCAACAATGTTGCTCTTCATGGAAACAAGTTCATAGAGGAAGAGGATCTTCTGAGATTCATGATCAAAGAAGAAGTTGATCTTGTGTTACCACACTTTGAGGTAGATGAGACAAGGAAAATTGACAGGAAAGCTCTAACAAATTGGGTGGTGAAGGTTTATCAAGGGAGAAAAACTCTAGCACATGCCTTGAAAGACACTAAAACAGCTGTGAGGCAATTGAATAATTTAGTAACGGCGCTTCTTATAATAGTAACCGCTGTTATTTGGCTTCTGTTGATGGAAATTGCTACTACCAAAGTACTTGTCTTCCTTCTAACTCAACTTGCAGTGGCAGCTTTCATGTTTGGAAACTCTTGCAAGACTGCATTTGAAGCTCTAATCTTTGTGTTTGTTATGCATCCATTTGATGTTGGGGACCGTTGTGCCGTTGATGGCGTCCAGCTGTTGGTTGAAGAAATGAACATCTTGACGACAGTCTTCTTGAAACTCAACAATGAGAAGGTGTATTATCCCAACTCAGTTTTGGCAACAAAGCCCATCACTAACTACTACAGAAGTCCAGACATGGGCGACACTGTTGAATTCTCAATCGGTTTCTCAACGCCATTGGAGAGGATTGGGCTCTTGAAAGAGAAAATAAAGAGGTATTTGGAGAAGAATCCACAACATTGGCATCCAAATCATAGTGTGGTGGTGCAGGAGATTGAAAGTGTGAATAAGATAAAGATCGCTCTTTATACGAACCACACCATGAATTTTCAAGACTGGACTGAGAAGAACCGACGAAGAACCGAGCTCGTGATGGAGTTGAAGAGAATTTTTGAAGAACTGAAGATCAACTACAATCTTCTGCCTCAAACAGTACATCTCTTCCCAGTTGAGGGCACTGAAGTCTACAGAAGATCTTGA 2202 41.46 MDVNANKPLQFFRRSSSQKETENGGQVMVEISSVENGYSVPKQNRVDSQTKEPADSSIGYGYDSPLAPTANKPPKIPSSNGTLTPRKSLRRSILSKPKSRFGDQPGYIDSDMFEENHLSLRDQIGATSSRSSTLNTPKAQPEEEDDEEIFKIEQLNNKHKKVKVKTVIKWVGVFCIIGCLVASLTVNPLKNRFLWGLRVWKWCLLATVILCGMIFTHWVMNVIVFLIERNFLLKKKVLYFVHGLKKSVQVTLWLTLVLVTWGSLFDRRNHTIPSSRITTKILDAVTWTLVSLLIGAFLWLVKTLLLKILASKFHMNRFFDRIQESIFHHHVLQTLSRPPLMEGAEITPKSSSGRLSLKSKKSDRKKVIDMGKIHQLKREKVSAWTMKVLVDAVTSSEMSISQILDESYQDVADGEITDEMEVARAAAYKIFNNVALHGNKFIEEEDLLRFMIKEEVDLVLPHFEVDETRKIDRKALTNWVVKVYQGRKTLAHALKDTKTAVRQLNNLVTALLIIVTAVIWLLLMEIATTKVLVFLLTQLAVAAFMFGNSCKTAFEALIFVFVMHPFDVGDRCAVDGVQLLVEEMNILTTVFLKLNNEKVYYPNSVLATKPITNYYRSPDMGDTVEFSIGFSTPLERIGLLKEKIKRYLEKNPQHWHPNHSVVVQEIESVNKIKIALYTNHTMNFQDWTEKNRRRTELVMELKRIFEELKINYNLLPQTVHLFPVEGTEVYRRS 733
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 25888696 25891532 + CaPI482276_05g017320.1 Cam05g1732 127136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam05g1732 733 MobiDBLite consensus disorder prediction 73 89 - -
Cam05g1732 733 Gene3D - 565 614 IPR023408 -
Cam05g1732 733 MobiDBLite consensus disorder prediction 126 146 - -
Cam05g1732 733 MobiDBLite consensus disorder prediction 9 55 - -
Cam05g1732 733 MobiDBLite consensus disorder prediction 1 107 - -
Cam05g1732 733 PIRSF Memb_At2g17000 6 733 IPR016688 -
Cam05g1732 733 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 51 721 IPR016688 GO:0005886(PANTHER)|GO:0006820(PANTHER)|GO:0008381(PANTHER)|GO:0050982(PANTHER)
Cam05g1732 733 Pfam Mechanosensitive ion channel, beta-domain 558 615 IPR006685 GO:0016020(InterPro)|GO:0055085(InterPro)
Cam05g1732 733 FunFam Predicted mechanosensitive ion channel 565 614 - -
Cam05g1732 733 SUPERFAMILY Sm-like ribonucleoproteins 554 614 IPR010920 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g1162 Cam-Chr2:22735526 Cam05g1732 Cam-Chr5:25888696 1.80E-137 dispersed
Cam03g1541 Cam-Chr3:30366165 Cam05g1732 Cam-Chr5:25888696 3.70E-184 dispersed
Cam05g1732 Cam-Chr5:25888696 Cam06g0949 Cam-Chr6:14322974 3.70E-149 dispersed
Cam05g1731 Cam-Chr5:25849936 Cam05g1732 Cam-Chr5:25888696 1.40E-299 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam05g1732 K22048 - csv:101217197 1158.28