Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam05g1736 ATGACGATTTGGTGCTGCTTATGCTTCACCGTTGGAGAAGAAGACGAAAGGGAAAGGGAAGAGGAACTGAAGAAGGAAGGTGAAATGAAACCCATGATGCGTGAGGAGGTTTTTGAGAACCAGGATGACTCTGATCGCATTGTGCGAAATGGTGATGATTCTCAAGGGAGTAATCCACTTCCGATTGCTGTAGATGATGCGCCTGACCGTCATGACGGTGATCGACTTAGATTGTTTGAGGATATGGTCAGAGCAATGCACGATGGCGCCGATGGTGGTGGTGCTCATTGGGACGATGAGCTGCGCGCCGGCGGCGGCGGCGGCGGCGGGGCTATTAATCCCTGGAATTTTTCTTTTGGAATTCTGCATCAATCTGAGGGAGGAGAAAGTAGTAGCGCCTCGGCTTTGTCCTTGTCTTCTACGGTGGAGACTTCTAATGAGGAACGCGATCGGGATGCCAACCATAAGCGCGCTAAAGTTCTCTCCAAATTCATTGAGAGCTCATTTGCAACTCCATGGCCTTTGGGTGCTGGAAATCCTATGAGAGATTATGATTTTATTCACGGATCATCTTCAATTATGAGTAGGAATGAATTTCTATACCATGCTTCTACATCAAGCAGAGTTGACGAAGATTTGGAATCTAGTTTTGGTAGAGATGATGGGATCAATGAGAATGACACCTGTAAATCAGAAGGATTTGAAGTAAGAATGGATCTTACAGATGATTTACTGCATATGGTTTTCTCTTTCTTGGATCACATCAATCTTTGTCGAGCTGCTATAGTCTGCAGGCAGTGGCAAGCTGCTAGTGCTCATGAAGATTTCTGGAGGTGTTTGAATTTTGAAAATAGGAACATATCCATGGAACAATTTGAGGATATGTGTGGAAGATATCCAAATGCCACAGAGGTCAATATCTCTGGTGTACCTGCCGTCCACTTGCTTGCCATGAAAGCAGTTTCTTCTTTAAGACATCTGGAGGTTTTAACTCTGGGGAGAGGACAACTGGCAGATAACTTTTTTCACGCCCTGACTGATTGCCATTTATTGAAGAGTTTGACTGTCAATGATTCTACGCTGGTTAATGTTACACAAGAGATACCTATAAGCCATGATAGACTGCGTCATCTTCATCTTACTAAATGTCGTGTTATACGCATATCTGTTAGATGTCCACAACTTGAAACATTGTCGTTGAAGCGCAGCAACATGGCACAGGCTGTTCTTAACTGCCCCCTTCTTCGGGACCTGGATATAGGCTCTTGCCACAAGCTCTCAGATGCTGCAATTCGCTCGGCCGCTATTTCATGCCCACAGTTGGAATCTCTTGATATGTCTAATTGTTCATGTGTTAGCGATGAGACATTACGTGAAATTTCTGCAAACTGCCCAAATCTCCAGCTTCTGAATGCATCATACTGCCCAAATATATCTTTGGAGTCTGTAAGACTGACAATGCTGACCGTGCTTAAGCTTCACAGCTGTGAGGGCATCACATCAGCTTCAATGACCGCAATATCTAGTAGTTCTGGTTTGAAGGTTTTGGAGCTTGATAATTGCAGTCTTTTGACTTCTGTTTCTCTGGATCTTCCCCATTTACAGAATATCAGACTTGTCCATTGCCGCAAATTCTCAGACTTGAGTTTACAGAGTGTTAAATTATCATCCATAATGGTCTCTAATTGTCCATCACTTCACCGGATCAACATCACTTCCAATTTACTTCAAAAATTGGTGTTGAAGAAACAAGAGAGCTTGGCCAAATTGGTTTTGCAGTGCCCTAGTCTGCAAGATGTGGACCTCACAGACTGTGAATCACTAACGAATTCTATTTGTGAGGTTTTTAGTGATGGTGGTGGATGCCCTATGTTGAAATCACTTGTTCTTGATAACTGCGAGAGTCTGACTGCTGTTCGATTCTGTAGCAGTTCTTTAGGCAGTCTTTCCCTTGTTGGTTGCCGGGCAATCACTTCACTTGAACTTCAATGCCCTAATCTCGAACAGGTTTCTTTAGATGGCTGTGATCATCTTGAGAGAGCATCATTTTCCCCGGTTGGTCTGCGGTCACTAAACCTGGGAATCTGTCCCAAATTGAATGAATTAAAACTTGAGGCCCCTCGGATGGATTTACTTGAGTTAAAAGGTTGTGGTGGATTGTCTGAAGCAGCCATCAATTGTCCTCGTCTAACATCGTTGGATGCTTCCTTTTGTGGCCAACTGAAAGATGAGTGTTTGTCTGCAACTACTGCCTCATGTCCACAGATTGAGTCGTTAATACTGATGTCATGTCCATCGGTTGGTTCAGAGGGGCTTTACTCTCTGCGATGCCTTCTGAAGTTGGTTGTGCTCGATTTATCATATACCTTTTTGATGAGCTTGCAGCCAGTCTTCGAGTCTTGTATACAACTTAAGGTATTGAAACTACAAGCATGCAAGTATTTAACTGACTCATCGCTAGAGCCTCTTTATAAGGAAGACGCTCTTCCAGCTCTTCAAGAGTTAGACTTATCTTACGGGACTCTTTGTCAATCTGCCATAGAAGAGCTTCTTGCTTGTTGCACTCACTTAACTCATGTGAGCTTAAATGGGTGTGTGAACATGCATGATCTAAATTGGGGTTGTAGCATTGGACAGCTTTCGTTGTCCAGCATCCCAATTCCTCTTGGTCAGGCCACTCTTGATGCGATTGAGGAACCAGTTGCACAGCCAAACCGTTTGTTACAGAACCTTAACTGTGTAGGTTGTCAGAATATTAGAAAGGTTCTCATTCCTCCAGCTGCTCGTTGTTTTCATTTATCATCATTAAACCTATCCTTGTCTTCAAATCTCAAGGAAGTTGACGTCTCTTGTTACAACCTATGCTTTCTTAATTTGAGTAATTGCTGCTCTTTGGAAGTTCTAAAACTTGACTGCCCGCGGTTAACCAGTCTCTTTCTTCAGTCTTGCAACATTGAAGAAGAAGTGGTTGTGGCTGCGGTATCGAGATGTAGCATGCTCGAGACGTTGGATGTCCGCTTATGTCCAAAGATCTCCTCTATTAGCATGGTACAACTGCGTATTGCTTGTCCAAGTTTGAAGCGGATCTTCAGCACCGATCTGTTTGGTTTGGGCCCTGAAGAAGCCTTCCAGTTTGTGGTTACTGGCTCTGATTGTAAGTCGAATTTCTTCTCACACCCACTTGCTTATTCTTCTTACTTCAACGGCCGTTTCTGTTTCTTGAAGCTTATGATTTCAAGTTCTTCTGTATATACTGCATTTGTTGGTTCTAGATTTGAAGATTCTCTTCTGGCAAATGTGACTGATAATCCTGCTGATAAACTAGTAGCTGTGCTTAACAAGAACAGAACTGCTAATAAGCTATCTGCTCTAAAAGACAATCCTGGCTTGGCATGCCTTGCTCTTCAGTATATTAAGGCATACCAAGGGAAATGTGAAGCAGTTGGAGGTCCCGACGGAATGAAGCCTCCAAATTCTGCATTCGTTGAAACTTTTGCTCCTAACTGTGGAGTTGTTGTCTCGTCTCTCGCTCCAATCACGGGGCGGTTGCTTGGTTGCCAGTCTAAATATGTACATGCACCTGAAGCATTTTCTGATGTTTTGATGGCGAATAACAAGAGCTTGGAAATTCTCTACTACAAGAATAACACAGAAGTTGGAGCTGCTGTGACTGGTACGGATGGGGGTTCTCCTTACTTTTGGTGTGTGTTGTTCAGCAATGGTAGCATCTCTAACAGCTTTGCCTTTGAGGGAGGAGTGGCCAAGTTAACGCGCCCCGGTTGCTACAGTGGGGCCAATGACCAGTGCAGCGGAGCCGATAGTCCGTTTTCTACCATGCGTATATTGCTATCAGCCTTGACATCTTTGCTTGCCCTGGCATATGCATTTGGTTTATGA 3897 43.88 MTIWCCLCFTVGEEDEREREEELKKEGEMKPMMREEVFENQDDSDRIVRNGDDSQGSNPLPIAVDDAPDRHDGDRLRLFEDMVRAMHDGADGGGAHWDDELRAGGGGGGGAINPWNFSFGILHQSEGGESSSASALSLSSTVETSNEERDRDANHKRAKVLSKFIESSFATPWPLGAGNPMRDYDFIHGSSSIMSRNEFLYHASTSSRVDEDLESSFGRDDGINENDTCKSEGFEVRMDLTDDLLHMVFSFLDHINLCRAAIVCRQWQAASAHEDFWRCLNFENRNISMEQFEDMCGRYPNATEVNISGVPAVHLLAMKAVSSLRHLEVLTLGRGQLADNFFHALTDCHLLKSLTVNDSTLVNVTQEIPISHDRLRHLHLTKCRVIRISVRCPQLETLSLKRSNMAQAVLNCPLLRDLDIGSCHKLSDAAIRSAAISCPQLESLDMSNCSCVSDETLREISANCPNLQLLNASYCPNISLESVRLTMLTVLKLHSCEGITSASMTAISSSSGLKVLELDNCSLLTSVSLDLPHLQNIRLVHCRKFSDLSLQSVKLSSIMVSNCPSLHRINITSNLLQKLVLKKQESLAKLVLQCPSLQDVDLTDCESLTNSICEVFSDGGGCPMLKSLVLDNCESLTAVRFCSSSLGSLSLVGCRAITSLELQCPNLEQVSLDGCDHLERASFSPVGLRSLNLGICPKLNELKLEAPRMDLLELKGCGGLSEAAINCPRLTSLDASFCGQLKDECLSATTASCPQIESLILMSCPSVGSEGLYSLRCLLKLVVLDLSYTFLMSLQPVFESCIQLKVLKLQACKYLTDSSLEPLYKEDALPALQELDLSYGTLCQSAIEELLACCTHLTHVSLNGCVNMHDLNWGCSIGQLSLSSIPIPLGQATLDAIEEPVAQPNRLLQNLNCVGCQNIRKVLIPPAARCFHLSSLNLSLSSNLKEVDVSCYNLCFLNLSNCCSLEVLKLDCPRLTSLFLQSCNIEEEVVVAAVSRCSMLETLDVRLCPKISSISMVQLRIACPSLKRIFSTDLFGLGPEEAFQFVVTGSDCKSNFFSHPLAYSSYFNGRFCFLKLMISSSSVYTAFVGSRFEDSLLANVTDNPADKLVAVLNKNRTANKLSALKDNPGLACLALQYIKAYQGKCEAVGGPDGMKPPNSAFVETFAPNCGVVVSSLAPITGRLLGCQSKYVHAPEAFSDVLMANNKSLEILYYKNNTEVGAAVTGTDGGSPYFWCVLFSNGSISNSFAFEGGVAKLTRPGCYSGANDQCSGADSPFSTMRILLSALTSLLALAYAFGL 1298
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 25954050 25963203 + CaPI482276_05g017360.1 Cam05g1736 127140

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam05g1736 1298 SUPERFAMILY F-box domain 238 287 IPR036047 GO:0005515(InterPro)
Cam05g1736 1298 Gene3D Ribonuclease Inhibitor 233 486 IPR032675 -
Cam05g1736 1298 Gene3D Ribonuclease Inhibitor 875 1055 IPR032675 -
Cam05g1736 1298 Pfam F-box-like 242 282 IPR001810 GO:0005515(InterPro)
Cam05g1736 1298 MobiDBLite consensus disorder prediction 126 143 - -
Cam05g1736 1298 MobiDBLite consensus disorder prediction 15 71 - -
Cam05g1736 1298 CDD F-box_FBXO41 242 278 - -
Cam05g1736 1298 MobiDBLite consensus disorder prediction 126 155 - -
Cam05g1736 1298 SUPERFAMILY L domain-like 322 705 - -
Cam05g1736 1298 SMART fbox_2 240 280 IPR001810 GO:0005515(InterPro)
Cam05g1736 1298 PANTHER OS10G0396666 PROTEIN 222 1030 - -
Cam05g1736 1298 MobiDBLite consensus disorder prediction 15 50 - -
Cam05g1736 1298 SMART LRR_CC_2 464 484 IPR006553 -
Cam05g1736 1298 SMART LRR_CC_2 727 752 IPR006553 -
Cam05g1736 1298 SMART LRR_CC_2 854 885 IPR006553 -
Cam05g1736 1298 SMART LRR_CC_2 997 1022 IPR006553 -
Cam05g1736 1298 SMART LRR_CC_2 412 437 IPR006553 -
Cam05g1736 1298 SMART LRR_CC_2 664 694 IPR006553 -
Cam05g1736 1298 SMART LRR_CC_2 801 826 IPR006553 -
Cam05g1736 1298 SMART LRR_CC_2 972 996 IPR006553 -
Cam05g1736 1298 SMART LRR_CC_2 531 556 IPR006553 -
Cam05g1736 1298 SMART LRR_CC_2 485 510 IPR006553 -
Cam05g1736 1298 SMART LRR_CC_2 622 660 IPR006553 -
Cam05g1736 1298 SMART LRR_CC_2 594 619 IPR006553 -
Cam05g1736 1298 SMART LRR_CC_2 438 463 IPR006553 -
Cam05g1736 1298 SMART LRR_CC_2 753 778 IPR006553 -
Cam05g1736 1298 SUPERFAMILY RNI-like 688 1032 - -
Cam05g1736 1298 FunFam F-box/LRR-repeat protein 15 232 482 - -
Cam05g1736 1298 FunFam F-box/LRR-repeat protein 15 794 879 - -
Cam05g1736 1298 Gene3D Ribonuclease Inhibitor 522 872 IPR032675 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam05g1736 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam05g1736 Cam-Chr5:25954050 Cam06g0143 Cam-Chr6:3335953 4.40E-36 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g163 . . . . Bpe02g01560 . . . . . . . Car09g00314 . . . . . . . . . . . Cla05g01627 Cam05g1736 Cec05g1744 Cco05g1801 Clacu05g1727 Cmu05g1612 Cre05g1740 . . . . Lsi04g01386 . . . . . Bda01g01347 . . . . . Sed05g1795 . Cmo09g00363 Cma09g00364 . . . . . Bhi09g03082 Tan01g3472 Cmetu07g0807 . . Mch11g0452 . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004724 2 1 1 2 2 1 2 1 1 1 1 1 2 1 1 1 1 4 2 1 1 1 1 1 1 1 1 4 1 1 42