Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam05g1739 ATGCTGCAGCGAAATAACAGAATAGCGTCCTTGTCAGCAACACCCAAATGGGTTTCTTCCATTACCCATCTCTGCAACCAAAGAAAGCGACCCCTTGTTACTGAGAGCTTGCATTTGCAAATTTGCAACCAGAAACGAAGAGAGAGAGAAAAAGGAAATGGGTTTAAGGGTTGCTGTGTGATGTTGCAGGTTCTTGTTACTAACCAGCCATGGAAAGTGCAACAATGTAAGATGAAGTTTATGAAGAGGGCAGCAATGGCACTTCCTGTTGAGCTTGTTGTTTTGGCTTTTCTCTTCTGTGCTACCGTTGGTGTGGTGGACTCTGATGATGGAGCAACGTTGTTGGAGATAAAGAAATCATTCAGGGACGTGGATAATGTTCTTTATGATTGGACAAGCTCACCTTCATCAGACTACTGTATGTGGAGAGGTGTCACCTGTGACAATGCCACTCTCAATGTTATCTCTCTTAATCTTTCAGGTCTCAATTTGGATGGGGAAATTTCTCCTTCAGTCGGGAACCTCAAGGGCCTGCAAACTTTGGATTTGAGGGGGAATAGTCTTTCTGGGCAAATTCCAGATGAGATTGGGGATTGCTTTTCGTTAATAAATCTGGATTTGTCGTTTAATGAGATTTATGGAGACATACCATTTTCCATTTCGAAGTTGAAGCAACTGGAAATGCTTGTTCTGAAAAATAATCGACTGATTGGGCCGATCCCATCTACTTTATCTCAGATTCCAAACTTGAAGGTCTTGGATCTGGCACAGAATAATCTTAGTGGGGAAATACCAAGACTAATTTACTGGAATGAAGTGTTGCAATATCTTGGTTTGCGTGGCAACAATTTGGTGGGCACACTATCTCCAGATATGTGTCAGCTGACTGGTTTATGGTATTTCGATGTGAGAAACAACAGTTTAACTGGCGGCATACCCCAAACCATAGGCAACTGCACAGCCTTCCAGGTCTTGGACTTGTCATACAATCATCTCACTGGAGAGATACCATTTAACATTGGTTTCCTTCAAGTAGCCACGTTGTCCTTACAGGGTAATCAGCTATCAGGTCCCATTCCACCCGTAATTGGTCTGATGCAGGCGCTTGCTGTGCTAGATTTGAGTTGCAACATGTTAACTGGTCCAATCCCCTCTATCTTAGGGAATCTGACTTATACCGAGAAGCTGTACTTGCATAGTAACAAGCTCACTGGGCCCATTCCAGCAGAGCTTGGGAATATGACGAAGCTCCATTATCTCGAACTGAATGATAATCATCTTACTGGGAATATTCCAGCTGAGCTTGGAAAACTCACTGATTTATTCGATCTAAATGTTGCTAATAACAATCTCGAAGGGCCTATCCCTGACAATCTTAGCTCTTGCACAAATCTCAACAGCCTAAATGTGCATGGCAACAAGTTGAATGGAACTATTCCCCCGTCTTTCCAGAGGCTAGAGAGTATGACTTACTTGAATCTCTCCACGAATGATCTACAAGGTCCTATTCCAGTCGAGCTGTCTCGTATTGGCAATTTGGATACGTTAGACATTTCAAATAACAAAATTAGTGGCACAATTTCTTCCTCCTTCGGTGATCTGGAACATCTGCTAAAGCTAAATTTAAGTAGGAATCATTTGACGGGATTTATTCCAGCTGAATTTGGCAATCTAAGGAGTGTAATGGAAATAGATATTTCACACAACCAGCTCTCTGGGTTCATTCCTCAAGAACTGAGTCAACTTCAAAATCTTCTCTCCTTGAGACTTGAAAACAACAATTTATCTGGGGACCTGACGTCGCTGATTAGCTGCCTAAGTCTTACTGAATTAAATGTATCTTATAACAATCTAGCTGGTGAGATTCCGACAAGCAACAACTTCTCTAGATTTTCATCTGACAGTTTCCTTGGAAATCTTGCCCTCTGTGGATATTGGAATAGCAACAACTATCCCTGCCATGAACCTCATACGACAGAGCGAGTGACCATATCTAAAGCTGCTATCCTGGGAATTGCTCTCGGTGCCCTTGTAATCCTTCTAATGATCCTTCTAACAGTGTGCCGTCCAAACAACACAATACCATTTCCAGATGGATCACTTGACAAACCAGTTACGTACTCCACTCCCAAGCTAGTGATCCTTCACATGAACATGGCCCTTCACGTTTATGAGGATATTATGAGGATGACTGAAAATTTGAACGAAAAGTACATTATTGGACATGGAGCTTCAAGCACAGTCTACAAGTGTGTACTGAAGAATTGTAAACCTGTGGCTGTCAAAAAGCTCTTTTCCCACCAGCCCCATAGCATGAAGGGATTCGAGACCGAACTGGAAACCGTGGGTAGCATCAAGCACAGAAATCTAGTAAGCCTCCAAGGATACTCCTTATCCCCCTCTGGGAATCTCCTCTTCTATGACTACATGGAAAATGGCAGTCTTTGGGATCATCTACATGGGTCTAGCTCTACCAAGAAGAAAAAGCTTGACTGGGACACTCGGCTCAATATTGCCCACGGAGCAGCCCAGGGACTATCATATCTACACCATGATTGTAGCCCTCGCATTATCCACAGGGATGTTAAGTCATCTAACATTTTATTAGACAAGGATTTTGAAGCCCATCTCACTGATTTTGGTATTGCCAAGAGCTTATGCACCTCGAAGACATATACATCCACTTATATCATGGGAACCATTGGATACATAGATCCAGAGTATGCTCGGACTTCTCGACTTACTGAAAAGTCCGATGTTTACAGCTTTGGCATTGTGTTACTTGAATTGCTCACAGGAAGGAAAGCTGTGGACAATGAATCAAATCTCCACCAATTGATCTTATCAAAAACAGCCAACAATGCTGTAATGGAGACGGTTGATGCTGAAATAACTGCAACTTGCAAGGACCTTGGAGCTGTAAAGAAGGCATTTCAGCTGGCTCTCCTTTGCACCAAGAGGCAGCCATCCGACCGACCAACAATGCACGAAGTAACACGCGTCATTGCGAGTCTTCTGCCCTCCGCCACAACACTAAAGCAAACACCAACCATAACATCCATGCCCCCATCTGCAAAATCCCCTTGCTACAAGGATGAATATGCAAATCTAAAAACGCCGCACGTGCTGAACTGCCCAACCATGAGCACCTCAGATGCCCAGCTCTTCCTCAAGTTCGGAGAGGTAATATCACAAAACATGTACGGTTTGTCAATTTACTTTAACCAGGCAATGATTTCAGGGGTAATCAACTTGCCAATGGTTTGA 3267 43.19 MLQRNNRIASLSATPKWVSSITHLCNQRKRPLVTESLHLQICNQKRREREKGNGFKGCCVMLQVLVTNQPWKVQQCKMKFMKRAAMALPVELVVLAFLFCATVGVVDSDDGATLLEIKKSFRDVDNVLYDWTSSPSSDYCMWRGVTCDNATLNVISLNLSGLNLDGEISPSVGNLKGLQTLDLRGNSLSGQIPDEIGDCFSLINLDLSFNEIYGDIPFSISKLKQLEMLVLKNNRLIGPIPSTLSQIPNLKVLDLAQNNLSGEIPRLIYWNEVLQYLGLRGNNLVGTLSPDMCQLTGLWYFDVRNNSLTGGIPQTIGNCTAFQVLDLSYNHLTGEIPFNIGFLQVATLSLQGNQLSGPIPPVIGLMQALAVLDLSCNMLTGPIPSILGNLTYTEKLYLHSNKLTGPIPAELGNMTKLHYLELNDNHLTGNIPAELGKLTDLFDLNVANNNLEGPIPDNLSSCTNLNSLNVHGNKLNGTIPPSFQRLESMTYLNLSTNDLQGPIPVELSRIGNLDTLDISNNKISGTISSSFGDLEHLLKLNLSRNHLTGFIPAEFGNLRSVMEIDISHNQLSGFIPQELSQLQNLLSLRLENNNLSGDLTSLISCLSLTELNVSYNNLAGEIPTSNNFSRFSSDSFLGNLALCGYWNSNNYPCHEPHTTERVTISKAAILGIALGALVILLMILLTVCRPNNTIPFPDGSLDKPVTYSTPKLVILHMNMALHVYEDIMRMTENLNEKYIIGHGASSTVYKCVLKNCKPVAVKKLFSHQPHSMKGFETELETVGSIKHRNLVSLQGYSLSPSGNLLFYDYMENGSLWDHLHGSSSTKKKKLDWDTRLNIAHGAAQGLSYLHHDCSPRIIHRDVKSSNILLDKDFEAHLTDFGIAKSLCTSKTYTSTYIMGTIGYIDPEYARTSRLTEKSDVYSFGIVLLELLTGRKAVDNESNLHQLILSKTANNAVMETVDAEITATCKDLGAVKKAFQLALLCTKRQPSDRPTMHEVTRVIASLLPSATTLKQTPTITSMPPSAKSPCYKDEYANLKTPHVLNCPTMSTSDAQLFLKFGEVISQNMYGLSIYFNQAMISGVINLPMV 1088
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 26001283 26009227 + CaPI482276_05g017390.1 Cam05g1739 127143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam05g1739 1088 SMART LRR_typ_2 534 557 IPR003591 -
Cam05g1739 1088 SMART LRR_typ_2 414 438 IPR003591 -
Cam05g1739 1088 SMART LRR_typ_2 175 199 IPR003591 -
Cam05g1739 1088 SMART LRR_typ_2 247 271 IPR003591 -
Cam05g1739 1088 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 272 381 - -
Cam05g1739 1088 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 705 809 - -
Cam05g1739 1088 ProSitePatterns Serine/Threonine protein kinases active-site signature. 857 869 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam05g1739 1088 Gene3D Phosphorylase Kinase; domain 1 716 809 - -
Cam05g1739 1088 Pfam Leucine rich repeat N-terminal domain 108 148 IPR013210 -
Cam05g1739 1088 SUPERFAMILY Protein kinase-like (PK-like) 712 1000 IPR011009 -
Cam05g1739 1088 Pfam Protein kinase domain 736 999 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam05g1739 1088 SUPERFAMILY L domain-like 344 632 - -
Cam05g1739 1088 ProSiteProfiles Protein kinase domain profile. 734 1006 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam05g1739 1088 Gene3D Ribonuclease Inhibitor 107 271 IPR032675 -
Cam05g1739 1088 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 382 655 - -
Cam05g1739 1088 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 602 1003 IPR050647 GO:0001558(PANTHER)|GO:0010286(PANTHER)
Cam05g1739 1088 SUPERFAMILY L domain-like 134 385 - -
Cam05g1739 1088 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 810 1013 - -
Cam05g1739 1088 Gene3D Ribonuclease Inhibitor 345 654 IPR032675 -
Cam05g1739 1088 CDD STKc_IRAK 740 1002 - -
Cam05g1739 1088 Gene3D Ribonuclease Inhibitor 272 344 IPR032675 -
Cam05g1739 1088 SMART serkin_6 734 1006 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam05g1739 1088 Pfam Leucine Rich Repeat 178 199 IPR001611 GO:0005515(InterPro)
Cam05g1739 1088 Pfam Leucine Rich Repeat 607 625 IPR001611 GO:0005515(InterPro)
Cam05g1739 1088 Pfam Leucine Rich Repeat 323 342 IPR001611 GO:0005515(InterPro)
Cam05g1739 1088 Pfam Leucine Rich Repeat 298 319 IPR001611 GO:0005515(InterPro)
Cam05g1739 1088 Pfam Leucine Rich Repeat 464 486 IPR001611 GO:0005515(InterPro)
Cam05g1739 1088 Pfam Leucine Rich Repeat 394 414 IPR001611 GO:0005515(InterPro)
Cam05g1739 1088 Pfam Leucine Rich Repeat 416 438 IPR001611 GO:0005515(InterPro)
Cam05g1739 1088 Pfam Leucine Rich Repeat 369 390 IPR001611 GO:0005515(InterPro)
Cam05g1739 1088 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 107 271 - -
Cam05g1739 1088 Pfam Leucine rich repeat 225 284 IPR001611 GO:0005515(InterPro)
Cam05g1739 1088 Pfam Leucine rich repeat 512 571 IPR001611 GO:0005515(InterPro)
Cam05g1739 1088 ProSitePatterns Protein kinases ATP-binding region signature. 740 763 IPR017441 GO:0005524(InterPro)
Cam05g1739 1088 Gene3D Transferase(Phosphotransferase) domain 1 810 1018 - -
Cam05g1739 1088 ProSiteProfiles Leucine-rich repeat profile. 249 271 IPR001611 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam05g1739 Cam-Chr5:26001283 Cam09g1357 Cam-Chr9:18697253 2.00E-18 dispersed
Cam05g1739 Cam-Chr5:26001283 Cam01g1487 Cam-Chr1:28427222 6.80E-67 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85196 PF00069 Pkinase 5.70E-46 CL0016 Cam PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam05g1739 K20718 - csv:101214398 1857.03