Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam05g1761 ATGGAATCGGAGGATTCAGTGAGATTAAGATTGGAGGAATTGCACAAAGACTTGGGGAAGAAACAGAGATTCGAGGAAGCAGTTTCCACCATTATTTCTCTGCTTCAAGATCGCTATCCTACTGCTTCTCCTTCATTACGCAAATCGTTCTATTCCGTAATTTGCCGAGTTGCAACAGTATTGAAGACGAGGTTTACGGCCCCAGGGTTTTGGCTTTCTGGTCTTAAGCTTTTTCAGTTTTCTTTGACTTTGCTCTCTGATCATTCAGAGAGACAACACCTGGAGGCTTGCCTAGCTCAGGCTAAGGAAATTCTTCACCAAATCGATAATCCATCTCCTGCTTCACTAAGTAATTCATCAAATGGAGGCTATCTTTTTGAGGGCCATCTCACTGTTGATCCAGAGCCACCCCAGCCCCAGTGGCTGGTGCAGTCAAACCTCTTGACAGCCGCTGCAGCTGCGCTATCTAATGCTGAATCTTCTCAAGGTCCAGCTGAGAACAGCAACACTTCTGAAAATGCTACTAATATTCTTCAAGCGCTTATTGAAAATCTAGATAACGCTGTAGATGGGTTCATGGACTTGGAAATGGCTAGCGGACCGCCAAGAGTCCCTCCTGCAAGTAAAGAAGTCGTCGCAAAACTTCCTGTAATTACGATAACTGATGAAGTTCTTGCCAAGCTAGGAAGAGATGTACAATGTGCTATTTGCAGGGAAAACTTGGCTGTTGATGACAAGATGCAGGAATTGCCTTGCAAACACACATTCCACCCACCTTGTTTGAAGCCCTGGCTGGATGAGCATAACTCTTGTCCAATTTGTCGACATGAATTGCCCACCGACGACCACAAATATGAGAGCTGGAAGGAGCGAGAGAAAGAGGCCGAAGAAGAAAGAAAAGGAGCTGCAAATGCTGTTCGTGGTGGTGAATATATGTATATTTGA 945 44.97 MESEDSVRLRLEELHKDLGKKQRFEEAVSTIISLLQDRYPTASPSLRKSFYSVICRVATVLKTRFTAPGFWLSGLKLFQFSLTLLSDHSERQHLEACLAQAKEILHQIDNPSPASLSNSSNGGYLFEGHLTVDPEPPQPQWLVQSNLLTAAAAALSNAESSQGPAENSNTSENATNILQALIENLDNAVDGFMDLEMASGPPRVPPASKEVVAKLPVITITDEVLAKLGRDVQCAICRENLAVDDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELPTDDHKYESWKEREKEAEEERKGAANAVRGGEYMYI 314
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 26252366 26254307 - CaPI482276_05g017610.1 Cam05g1761 127165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam05g1761 314 FunFam E3 ubiquitin-protein ligase RNF181 195 281 - -
Cam05g1761 314 Coils Coil 285 305 - -
Cam05g1761 314 Pfam Ring finger domain 233 275 IPR001841 -
Cam05g1761 314 SUPERFAMILY RING/U-box 228 281 - -
Cam05g1761 314 CDD RING-H2_RNF126-like 233 275 - -
Cam05g1761 314 ProSiteProfiles Zinc finger RING-type profile. 234 275 IPR001841 -
Cam05g1761 314 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 121 280 - GO:0005737(PANTHER)|GO:0016567(PANTHER)|GO:0061630(PANTHER)
Cam05g1761 314 SMART ring_2 234 274 IPR001841 -
Cam05g1761 314 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 197 281 IPR013083 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam05g1761 Cam-Chr5:26252366 Cam10g2090 Cam-Chr10:34609113 2.90E-18 dispersed
Cam05g1761 Cam-Chr5:26252366 Cam09g0365 Cam-Chr9:3975394 6.20E-13 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam05g1761 K16274 - csv:101218065 431.795