Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam05g1766 ATGCTTGCTTCCAAGGCTGTAGCTGAGGCTCACAAAAAGAGTGGTGTACCGTTGTTGCATGTTTGCCACGTGTGTGGTGTGGACCGGAGTAAATACGACCATTCCAACGGCTCTTCGAAATCAATCACGGTAGCATTGACTCAGTCCTACCGTAAGCTCACCTCTTCCTACGGCGACGCGTTCCAGTTCAATTTGGGCCGTTGGGCAGCTCCACGGGCATGTGAGGAACGGCTTATTCCTTCCACATCTGTAACCATAGCTACTAGATACTGTTTGTTAGTTTTCTTTTTTCTTTCTTCCATTTTGATCGAAGAGATTGGAGCTGGGCATTTTCAGAGCCTAGACAGTATGGGCTATCTGAATTCAGTCTTGTCTTGCTCGAGCCAGATTCATGCTGCTGAGGAGGCACCTGTAAGCGGCGGAGGATTAAGTCAGAATGGAAAGTTCAGCTACGGATATGCTAGCTCTCCTGGGAAGAGATCTTCGATGGAAGATTTTTATGAGACACGAATAGATGGTGTGGAAGGAGAAATAGTTGGTCTATTTGGTGTTTTTGATGGTCATGGCGGAGCTCGAGCTGCGGAGTATGTTAAGCACAATCTTTTTAGTAACTTGATCAGCCATCCAAAGTTCATATCGGATACCAAGTCCGCTATAGCTGATGCATACAACCACACAGACACAGAATTTCTTAAGTCGGAAAATAATCAAAACAGAGATGCTGGATCAACTGCTTCCACTGCCATCCTAGTTGGTGACCGCTTACTTGTTGCAAATGTGGGTGACTCTAGAGCTGTTATTTGCCGGGGTGGCACTGCCATTGCTGTCTCTCGAGATCATAAGCCTGACCAAACTGATGAGCGACGACGAATTGAGGATGCTGGAGGATTTGTGATGTGGGCTGGAACTTGGAGAGTTGGAGGTGTTCTTGCTGTTTCACGTGCATTTGGTGATAGGTTGTTAAAGCAATATGTTGTTGCTGACCCTGAAATTCAGGAGGAAAAGATTGATAGCTCGCTCGAATTTCTTATACTTGCAAGTGATGGACTGTGGGATGTTGTCTCTAATGAGGAAGCCGTTGCTATGACTAAACCAATTCAGGACCCAGAAGAGGCAGCAAAGAGGTTGATGCAAGAAGCATATCAGAGAGGCAGTGCAGATAACATTACTTGCGTCGTCGTTCGTTTCTTGGCGAATCAAGGAAGTCCCTCTCTTGCAACATCTGGCCGCACTGCCCTCCAATCCCGTCGTTTGCTCTCAGCCAGGTCTACCTTCCCTGCTTGCCTACCGAATTCCGTCGTCTGCCGCGAGCTAGGTCTACCGTCCAGTTGCATCGCTTGCCGCGAGCCAGGTCTGCCGCTCCAGTGA 1368 48.03 MLASKAVAEAHKKSGVPLLHVCHVCGVDRSKYDHSNGSSKSITVALTQSYRKLTSSYGDAFQFNLGRWAAPRACEERLIPSTSVTIATRYCLLVFFFLSSILIEEIGAGHFQSLDSMGYLNSVLSCSSQIHAAEEAPVSGGGLSQNGKFSYGYASSPGKRSSMEDFYETRIDGVEGEIVGLFGVFDGHGGARAAEYVKHNLFSNLISHPKFISDTKSAIADAYNHTDTEFLKSENNQNRDAGSTASTAILVGDRLLVANVGDSRAVICRGGTAIAVSRDHKPDQTDERRRIEDAGGFVMWAGTWRVGGVLAVSRAFGDRLLKQYVVADPEIQEEKIDSSLEFLILASDGLWDVVSNEEAVAMTKPIQDPEEAAKRLMQEAYQRGSADNITCVVVRFLANQGSPSLATSGRTALQSRRLLSARSTFPACLPNSVVCRELGLPSSCIACREPGLPLQ 455
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 26427285 26440329 - CaPI482276_05g017660.1 Cam05g1766 127170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam05g1766 455 ProSitePatterns PPM-type phosphatase domain signature. 181 189 IPR000222 GO:0043169(InterPro)
Cam05g1766 455 Pfam Protein phosphatase 2C 179 389 IPR001932 -
Cam05g1766 455 SMART PP2C_SIG_2 161 396 IPR001932 -
Cam05g1766 455 SMART PP2C_4 140 394 IPR001932 -
Cam05g1766 455 Gene3D - 142 400 IPR036457 -
Cam05g1766 455 SUPERFAMILY PP2C-like 144 396 IPR036457 -
Cam05g1766 455 ProSiteProfiles PPM-type phosphatase domain profile. 150 396 IPR001932 -
Cam05g1766 455 PANTHER PROTEIN PHOSPHATASE 134 395 IPR015655 GO:0004722(PANTHER)|GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Cam05g1766 455 CDD PP2Cc 149 396 IPR001932 -
Cam05g1766 455 FunFam probable protein phosphatase 2C 59 142 400 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam05g1766 Cam-Chr5:26427285 Cam08g1080 Cam-Chr8:17139833 5.50E-95 dispersed
Cam05g1766 Cam-Chr5:26427285 Cam05g1043 Cam-Chr5:9434930 6.70E-93 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam05g1766 K17506 - csv:101216117 574.704