Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam05g1769 ATGGCGTCTCTTTCTTCAATGCTTTTCTTTGCTTTTTGTTTCCTTTTCTTTCAATCTTTTGCCGGAAAAGTCTCGCCTGACTCCCACCGCCTCACCGTCGAACTCGCCGGACTTCTCCCCTCCGCCTCCTGTACCCGCCGCTCCCCCCAAGGTGTAAGACAACAATCATCACTGGAGGTAATTCATCGGCATGGCCCATGTGGCGGCGAAGTTTCAAAAGCTCCGACAGCTATCGAAATGTTCGTGCAAGATCAGGCTCGAGTGGATTTCATCCACTCAAAATTCTCAGGGGAGCTCAAATCTATTGACCGTTTACGACCATCAAAGGCCACAAAAATTCCGGCAAAGTCTGGTGCCACAATTGGTTCTGGCAATTACATAGTGAACGTTGGTTTAGGGACGCCAAAGAAGTACTTGTCGCTTATATTTGACACCGGTAGTGATCTGACCTGGACTCAGTGCGAGCCTTGTGCTAGATATTGCTATAATCAAAAGGACCCTGTTTTCGCCCCTTCTCAATCCACCTCCTATTCCAACATTTCTTGTTCTTCGTCTGAATGTTCTCAGCTTGAATCGGGCACCGGGAACCAGCCTGGTTGCTCCGCCGCGAAAGCTTGCATTTACGGAATACAATACGGCGATCAATCTTTCTCCGTCGGATATTTCGCCAGAGAAACCCTAACCTTAACCTCCACCGACGTTATCGACAATTTCCTCTTCGGTTGCGGCCAAAACAACCGTGGACTCTTCGGCAGCGCCGCCGGTCTCATCGGCCTCGGCCAGGACAAAATCTCCATCGTCAAACAAACCGCCCAAAAGTACGGCCAGATCTTCTCCTACTGCCTCCCTAAAACCTCGAGTTCCACCGGTTACCTAACCTTCGGCGACGGCGGCGGCGGTGGCGGCGCTCTGAAATACACGCCGATCACAAAAGCACACGGCGTCGCGAATTTCTACGGCGTCGACATCGTAGGAATGAAGGTCGGCGGAACTCAGATTCCGATCTCGCCATCAGTCTTCTCGACCTCCGGCGCAATCATCGATTCCGGCACGGTTATCACACGGCTGCCGCCGGATGCGTACAGCGCCTTGAAATCAGCGTTTCAGAAAGGAATGGCGAAGTATCCAAAGGCGCCGGAGCTTTCTATTTTGGACACGTGTTACGATCTGAGCAAATATAGCATCGTAGAGATCCCTAAAGTGTCGTTTCTTTTCAAAGGAGGAACGGAACTCGATCTGGACAGCACCGGAATCTTGTACGGAGCAGCGACGAGGCAGGTGTGTCTGGCGTTCGCCGGTAATCAAGATCCGAGCACCGTCACCATTATTGGGAACGTGCAGCAGAAGACACTGCAGGTGGTTTACGATGTCGGTGGAGGGAAGATTGGGTTTGGTTATAATGGTTGTTAG 1410 51.56 MASLSSMLFFAFCFLFFQSFAGKVSPDSHRLTVELAGLLPSASCTRRSPQGVRQQSSLEVIHRHGPCGGEVSKAPTAIEMFVQDQARVDFIHSKFSGELKSIDRLRPSKATKIPAKSGATIGSGNYIVNVGLGTPKKYLSLIFDTGSDLTWTQCEPCARYCYNQKDPVFAPSQSTSYSNISCSSSECSQLESGTGNQPGCSAAKACIYGIQYGDQSFSVGYFARETLTLTSTDVIDNFLFGCGQNNRGLFGSAAGLIGLGQDKISIVKQTAQKYGQIFSYCLPKTSSSTGYLTFGDGGGGGGALKYTPITKAHGVANFYGVDIVGMKVGGTQIPISPSVFSTSGAIIDSGTVITRLPPDAYSALKSAFQKGMAKYPKAPELSILDTCYDLSKYSIVEIPKVSFLFKGGTELDLDSTGILYGAATRQVCLAFAGNQDPSTVTIIGNVQQKTLQVVYDVGGGKIGFGYNGC 469
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 26521760 26526016 - CaPI482276_05g017690.1 Cam05g1769 127173

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam05g1769 469 PANTHER ASPARTYL PROTEASES 44 469 IPR001461 GO:0004190(InterPro)|GO:0006508(InterPro)
Cam05g1769 469 FunFam Aspartyl protease AED1 103 295 - -
Cam05g1769 469 Gene3D Acid Proteases 103 296 IPR021109 -
Cam05g1769 469 FunFam Aspartyl protease AED1 300 469 - -
Cam05g1769 469 ProSiteProfiles Peptidase family A1 domain profile. 126 465 IPR033121 -
Cam05g1769 469 Pfam Xylanase inhibitor N-terminal 126 296 IPR032861 -
Cam05g1769 469 Gene3D Acid Proteases 301 469 IPR021109 -
Cam05g1769 469 Pfam Xylanase inhibitor C-terminal 319 464 IPR032799 -
Cam05g1769 469 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 141 152 IPR001969 GO:0004190(InterPro)|GO:0006508(InterPro)
Cam05g1769 469 SUPERFAMILY Acid proteases 120 469 IPR021109 -
Cam05g1769 469 PRINTS Pepsin (A1) aspartic protease family signature 132 152 IPR001461 GO:0004190(InterPro)|GO:0006508(InterPro)
Cam05g1769 469 PRINTS Pepsin (A1) aspartic protease family signature 345 356 IPR001461 GO:0004190(InterPro)|GO:0006508(InterPro)
Cam05g1769 469 PRINTS Pepsin (A1) aspartic protease family signature 441 456 IPR001461 GO:0004190(InterPro)|GO:0006508(InterPro)
Cam05g1769 469 CDD cnd41_like 125 469 IPR033873 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam05g1769 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam05g1769 Cam-Chr5:26521760 Cam06g1632 Cam-Chr6:27756073 3.20E-66 dispersed
Cam05g1769 Cam-Chr5:26521760 Cam09g0343 Cam-Chr9:3795873 2.00E-76 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g617 . . . . . . . . . . . . Car09g00340 . . . Cpe06g00279 . . . . . . . Cla05g01658 Cam05g1769 Cec05g1777 Cco05g1835 Clacu05g1759 Cmu05g1645 Cre05g1773 Cone4ag1728 Cone7ag1648 Cone17ag0969 . . . . . . . . . . . . . . . Cmo09g00393 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005907 2 1 0 1 2 1 1 1 1 1 1 1 1 1 1 1 1 4 1 1 1 1 1 0 1 1 1 2 2 2 36