Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam05g1785 ATGCCCGCGCTTACAAGCTCTGGTCGGCGCGCAAAGAGCTTTTCACTTCATCGGTCGACGGACAAAGCCATGGCTCGCCGCCATAGCCAAGCTCAACCGTCCTGTTGGAAGCGTGTGCTACAGTTAATCGAGTGCTTTTTCATGCAATTTCTCGTGCGATTGGTCTCTCTCGTGATTGATATGGGTATATACCTCAGCAATCCCAAAACAGAGAAGTCCTCTGAAGACGGTGAGAATAGACGGCTTAGATATGGACTATCGTCTATGCAAGGATGGCGTGCCACAATGGAAGATGCTCATGCTGCAGTTCCTGATCTGGATGCCTGCACTTCCTTCTTTGGTGTTTATGATGGCCATGGAGGTAAGGTGGTTGCAAAGTTCTGTGCCAAGTACCTACATCAGCAAGTGAAGAAAAATGACACTTTTGCGGCTGGAGATATAGGAACTTCTGTGCAGAAAGCATTCTTCAGAATGGATGAAATGATGCGTGGACAAAGAGGATGGAGAGAATTAGCTGTTTTGGGTGATAGATTGAACAAGTTCACTGGCATGATAGAAGGGTTAATCTGGTCCCCAAAAAGCAGTGATGCAAATGACCTGGCTGATGATTGGGCTTTTGAGGAGGGTCCACACTCTGATTTTACTGGCCCAACTTCCGGGTGTACAGCCTGTGTTGCAATTATTAGAAATAACAAACTAGTTGTTGCAAATGCTGGTGATTCTCGCTGTGTGCTATCAAGAAAGGGCCAGGCCCACAGTCTCTCTAGAGATCACAAGCCTGATCTTGAGGCTGAGAAGGATAGAATTCTGAAAGCTGGTGGTTTTATTCATGCTGGACGAGTCAATGGTAGCTTGAACCTTGCCAGAGCTATTGGTGACATGGAATTTAAGCAGAATAAATTTTTACCTGCTGAAAAGCAAATTATTACTGCAAACCCTGATGTAACCACTGTTGAGCTTTGCGACGATGATGAGTTTATTGTGATAGCTTGTGATGGTATATGGGATTGCATGTCTAACCAGCAACTGGTAGATTTTATACATGAACAGCTAAAATCAGAAACTAAACTCTCTGTGGTTGTTGAGAGAGTACTTGATAGGTGTTTGGCACCTTCCACTGCTGGTGGTGAGGGATGTGATAACATGACCATGATTTTGGTGCAGTTTAAGAAAGATAATCAATCAAACTCCCCCATAGATGGCCAAACTTCACCTGCCGCCACTGCCTGTGCCGAACCAGACAGTACCGAATCGATGCAAAAAGATGAATTGAGCCACAGATTTTGA 1287 45.07 MPALTSSGRRAKSFSLHRSTDKAMARRHSQAQPSCWKRVLQLIECFFMQFLVRLVSLVIDMGIYLSNPKTEKSSEDGENRRLRYGLSSMQGWRATMEDAHAAVPDLDACTSFFGVYDGHGGKVVAKFCAKYLHQQVKKNDTFAAGDIGTSVQKAFFRMDEMMRGQRGWRELAVLGDRLNKFTGMIEGLIWSPKSSDANDLADDWAFEEGPHSDFTGPTSGCTACVAIIRNNKLVVANAGDSRCVLSRKGQAHSLSRDHKPDLEAEKDRILKAGGFIHAGRVNGSLNLARAIGDMEFKQNKFLPAEKQIITANPDVTTVELCDDDEFIVIACDGIWDCMSNQQLVDFIHEQLKSETKLSVVVERVLDRCLAPSTAGGEGCDNMTMILVQFKKDNQSNSPIDGQTSPAATACAEPDSTESMQKDELSHRF 428
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 26650618 26659271 - CaPI482276_05g017850.1 Cam05g1785 127189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam05g1785 428 MobiDBLite consensus disorder prediction 394 428 - -
Cam05g1785 428 SMART PP2C_4 73 387 IPR001932 -
Cam05g1785 428 ProSitePatterns PPM-type phosphatase domain signature. 112 120 IPR000222 GO:0043169(InterPro)
Cam05g1785 428 MobiDBLite consensus disorder prediction 1 27 - -
Cam05g1785 428 MobiDBLite consensus disorder prediction 394 415 - -
Cam05g1785 428 Gene3D - 60 390 IPR036457 -
Cam05g1785 428 CDD PP2Cc 83 389 IPR001932 -
Cam05g1785 428 PANTHER PROTEIN PHOSPHATASE 2C 68 390 IPR015655 GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0006470(PANTHER)
Cam05g1785 428 Pfam Protein phosphatase 2C 83 164 IPR001932 -
Cam05g1785 428 Pfam Protein phosphatase 2C 215 373 IPR001932 -
Cam05g1785 428 SUPERFAMILY PP2C-like 63 390 IPR036457 -
Cam05g1785 428 ProSiteProfiles PPM-type phosphatase domain profile. 83 389 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam05g1785 Cam-Chr5:26650618 Cam09g0478 Cam-Chr9:4938292 3.50E-35 dispersed
Cam05g1785 Cam-Chr5:26650618 Cam09g0333 Cam-Chr9:3673608 9.90E-163 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam05g1785 K17499 - csv:101211604 682.559