Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam05g1786 ATGCGTGCACCGGTGAGAGCTGCGAAGAGATACAGAGAGAGAGACGACGCAGGTAGAGATAGAATCCCACTCTGTCTCTATCTGTCGAAATTAATCTCCAAAATCCAACATCTTCCATTCCAATCCTCTCTTTTCTCTCCGCCTCCATCGATTCTCTTTCTCTCTATCTCTCTATCTCTCTCTTCATCTCCTTCTCTCCCTCCTCATCCCTCTTTGTGCCGCTCAACAAAGGATTGCATCGGTAGAGTTATGCAGGCAGATCAGACGGTGATTAGTTTGAGACCTGGTGGTGGCGGTGGCTTTCGTGGAAGCAGATTTGTTACACCTCGCTTCGATTCATCCTCCGCCGACTCTTCGTCGCTTCGTCCACATGGCGGCGCTGCTTCAATCCTCAAGACTGGCGATCTACGGTTTGAAGGTCGTGAGCGAATGCAATACACTCGAGACCAGCTTCTGCAGCTTAGGGAGGTTGCAACAGTCCCTGAGGATATCTTGAAAGTCAAACTAGAAGTTGAGTCAGAGATAGTTGGGGAAGATCAAACATGGGCCCGTGCTGAAAGCAATCAGCAATCGCAATCTCAAGGCCGTTACTTTGAGGCAGACAATCGAGATTGGCGTGGTCGATCTGGACAGTTACCCGGCTCCACAGAGGAAGGATCTTGGGAAGCAAATAAGGATTTGTCTGGACAATCTGAGTTGAGGTTCCAAGACTCAAATAATAGGAATCAAGTTTCTGGTAACCAAGGGGTTGGCACTGCACCTGCTCTCATCAAGGCTGAAGTTCCTTGGTCAGTTAGAAGAGGTAATATCTCAGATAAGGAACGAGTTTTGAAGACAGTTAAAGGTATACTGAATAAATTGACTCCAGAAAAGTTTGACATACTCAAAGGTCAACTGATTGACTCAGGAATTACATCCGCTGATATTTTGAAGGATGTTATATCGCTTATATTTGAGAAGGCCGTATTTGAGCCCACATTTTGCCCTATGTATGCACTTTTGTGCTCTGACCTCAACGAGAAGCTTCCTTCATTTCCATCCGAAGTGCCTGGAGAGAAAGATATCACTTTTAAACGTGTTCTCTTAAATATTTGCCAAGAGGCATTTGAAGGTGCTGATAACATGAGGGCAGAAATCAGGCAGATGACTAGTCCTGAGCAGGAAACGGAAAGAAGAGATAAAGAAAGAATGGTTAAGCTTCGAACTCTAGGAAACATTCGCCTGATAGGTGAGCTTCTGAAACAGAAGATGGTGCCTGAAAAGATTGTTCACCATATTGTTCTGGAGCTGTTGGGGCCTGACCCTAAAATATGCCCTGCAGAGGAGAATGTCGAGGCTATTAGTCAGTTTTTTAACACAATAGGTAAGCAACTGGATGAGAGCCCAAAATCTCGACGGGTCAATGATGTATATTTCAGCCGTTTGAAGGAGCTCACTGCAAACACCCAATTAGCACCTAGGTTGAGATTTATGGTCCGTGATGTTCTTGATTTGCGGGCCAATAACTGGGTTCCTAGACGTGAAGAGGTGAAAGCGAAAACCATCACTGAAATTCATTCAGAGGCTGAAAAGAATCTAGGGCTCCGTCCAGGTTCAATGGCAATGATGAGAAATGGCCGTAATACCGAGGCACTTGGGGGATTAAGTCCTGGTGGTTTTCCAGTTGCCCGACCTGGCTTTGGAGGTATGATGCCTGGAATGCCTGGAACCAGGAAAATGCCTGGGATGCCTGGACTTGAGTCAGACAATTGGGAAGTTCCTAGATCCCGAGCAATGCCAAGGGGCGAAACCGGAGGTCCTACTGCGCGCGGCCAGTCATCATTAACGGGCAAAACACCTTCCATTAATTCAAAATATTTACCTCAGGGAAGTGGAGGTGTAATAACAGGGAAAACAAGTGCCTTGCTACAGGGTAGTGCTGCTGCATCTCCTGCCCGACCACCGAGTTCCATGCCTGGAACTCAGCCTGTTCCTCACAACCCTAAACCAGTTGCTCCAGTTACACCTATCATATCTTCGCCTCCGAAGCCTGTAGCTCCTGCTGCATCCAATCTGGTTGATCTTCGCAAGAAAACCGTTTCGCTGCTTGAGGAATACTTCAGCGTACGGATTCTTGATGAAGCTCTACAGTGTGTAGAGGAGCTGAAATCCCCAGCTTATCACCCTGAGGTTGTTAAAGAATCTCTTACCATTGCACTTGAGAAGATTCCACCATGTGTAGACCCAGTTGTTAAACTTCTTGAGCACTTGCTTCACAAGAATGTCTTGACTGAAAAGGATATAGGTACCGGGTGCCTTCTATATGGGTCAATGATGGATGATATCGGCATCGATCTACCAAAAGCACCAAGCAATTTCGGTGAGATTCTCGGGAAGTTAATTTTGATCGGAGGTCTGGATTTCGCTGTTGTGAAGGAGATTCTTAAGAAGGTGGAAGATAACTACTTGCAAAAATCCATTTTTGGTGGTGCTATGAAGATCCTCAACTCTAGCCCTTCTGGAGAAGGAATTCTGGCAACTCAAAGCGTTGAGATCCAGGCATGTGAGACTTTACTTGCGTGA 2562 46.29 MRAPVRAAKRYRERDDAGRDRIPLCLYLSKLISKIQHLPFQSSLFSPPPSILFLSISLSLSSSPSLPPHPSLCRSTKDCIGRVMQADQTVISLRPGGGGGFRGSRFVTPRFDSSSADSSSLRPHGGAASILKTGDLRFEGRERMQYTRDQLLQLREVATVPEDILKVKLEVESEIVGEDQTWARAESNQQSQSQGRYFEADNRDWRGRSGQLPGSTEEGSWEANKDLSGQSELRFQDSNNRNQVSGNQGVGTAPALIKAEVPWSVRRGNISDKERVLKTVKGILNKLTPEKFDILKGQLIDSGITSADILKDVISLIFEKAVFEPTFCPMYALLCSDLNEKLPSFPSEVPGEKDITFKRVLLNICQEAFEGADNMRAEIRQMTSPEQETERRDKERMVKLRTLGNIRLIGELLKQKMVPEKIVHHIVLELLGPDPKICPAEENVEAISQFFNTIGKQLDESPKSRRVNDVYFSRLKELTANTQLAPRLRFMVRDVLDLRANNWVPRREEVKAKTITEIHSEAEKNLGLRPGSMAMMRNGRNTEALGGLSPGGFPVARPGFGGMMPGMPGTRKMPGMPGLESDNWEVPRSRAMPRGETGGPTARGQSSLTGKTPSINSKYLPQGSGGVITGKTSALLQGSAAASPARPPSSMPGTQPVPHNPKPVAPVTPIISSPPKPVAPAASNLVDLRKKTVSLLEEYFSVRILDEALQCVEELKSPAYHPEVVKESLTIALEKIPPCVDPVVKLLEHLLHKNVLTEKDIGTGCLLYGSMMDDIGIDLPKAPSNFGEILGKLILIGGLDFAVVKEILKKVEDNYLQKSIFGGAMKILNSSPSGEGILATQSVEIQACETLLA 853
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 26670931 26677716 - CaPI482276_05g017860.1 Cam05g1786 127190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam05g1786 853 FunFam Eukaryotic translation initiation factor isoform 4G-2 268 503 - -
Cam05g1786 853 Pfam MIF4G domain 277 502 IPR003890 GO:0003723(InterPro)|GO:0005515(InterPro)
Cam05g1786 853 Gene3D - 686 841 - -
Cam05g1786 853 MobiDBLite consensus disorder prediction 600 620 - -
Cam05g1786 853 Pfam MA3 domain 688 800 IPR003891 -
Cam05g1786 853 Gene3D - 268 503 - -
Cam05g1786 853 ProSiteProfiles MI domain profile. 687 809 IPR003891 -
Cam05g1786 853 MobiDBLite consensus disorder prediction 636 662 - -
Cam05g1786 853 SUPERFAMILY ARM repeat 684 839 IPR016024 -
Cam05g1786 853 MobiDBLite consensus disorder prediction 182 198 - -
Cam05g1786 853 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4 GAMMA 129 851 IPR045208 GO:0003729(PANTHER)|GO:0003743(PANTHER)|GO:0003743(InterPro)|GO:0016281(PANTHER)
Cam05g1786 853 SMART if4_15 277 502 IPR003890 GO:0003723(InterPro)|GO:0005515(InterPro)
Cam05g1786 853 SMART ma3_7 688 800 IPR003891 -
Cam05g1786 853 MobiDBLite consensus disorder prediction 182 225 - -
Cam05g1786 853 MobiDBLite consensus disorder prediction 569 620 - -
Cam05g1786 853 SUPERFAMILY ARM repeat 270 505 IPR016024 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam05g1786 Cam-Chr5:26670931 Cam06g0947 Cam-Chr6:14309509 2.80E-47 dispersed
Cam05g1786 Cam-Chr5:26670931 Cam06g1387 Cam-Chr6:25305498 6.10E-281 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam05g1786 K03260 - csv:101211356 1305.43