Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam05g1810 ATGACGGTTGAACCTAGACTCGATGACCCAATTGACCAATTTCCCACTGGAATGCGTGTTCTCGCTGTTGACGACGATCCCACTTGTCTTTTGATCTTGGAGACTTTGCTTCGTCGTTGCCAGTATCATGTCACTACAACTAATCAGGCTATTATGGCACTCAAGTTGCTGAGGGAGAACAAGAACAAGTTTGATGTGGTTATCAGTGATGTTCACATGCCTGACATGGATGGATTTAAGCTGCTGGAGCTTGTTGGGCTGGAGATGGACCTGCCTGTTATTATGCTTTCTGCAAATGGAGATCCCAAACTTGTTATGAAAGGAATTACTCATGGAGCATGTGATTACTTGTTGAAACCTGTTCGCATTGAGGAGCTAAAGAACATTTGGCAGCATGTAATCAGAAGAAAGAAATTTGATCCAAAGGACCGAATGAATTCTGGCAATCAGGACAGGCCTGATTCTGAAAATGGCGAAGAAGCAGCAGATCCAAATGGGAAATTTAATAAAAAAAGGAAGGACCAGAACTATAACGAAGATGATGACCAGGACTATGGGCAAGAGAATGATGACTCATCGACCCAGAAGAAGCCTCGTGTTGTTTGGTCTGTGGAGCTGCATAGGAAGTTTGTAAATGCTGTCAACCAGTTAGGGATAGACAAGGCAGTGCCTAAAAAGATTTTGGACTTGATGAATGTCGAAAAGCTCACAAGAGAAAATGTAGCTAGCCATCTCCAGAAATACAGGCTTTATCTAAAGAGAATCAGCTGTGTGGCAAACCAGCAAGCTAACATGGTGACTGCATTGAGCAGCGCAGATCCTTCTTATTTGAGAATTGGTTCCCTTAGCGGAATTGGGAATTTCCATTCTTTGACTGGACCTCCACAGTTTCCTAACACTGCTTATAGATCTATCCCAACCACCGGGATGCTTGGTCGATTGAATTCTCCTGCTTGTATGGGTATGCATGGCCTTTCTTCCCCGGGAACAGTCCAACTCAGTAATTTGAACAATTCAAGCAATGATCAGACTACATTTCAGCCAATCATGCTTTCTGGGAACCGTAGTGGGAATATTTTCCGGGGAATGCCTGAGCCATCGGAAATCGATCAACTACAACATGTTAAACATGGGACTCATGCGGACAGTCTCTCTTCTGCTTTTGATGAGAGAACAGTATTTCCTGCTTCCATTGGCCTCCCAAATGCAAACATGTCTTCCAGTACTCTAAGTAATCCTCTTTTAGGATTAACTAATGATCCCTTGATTTCAGAAGTCCAGCATCATGAAGTGAATGGTGGTAGAAAATTTGGAACTCCATCTTCCATTTCGGTAGTATCTTCAAATTCAGATAGCTTACGTCCTTCACTAGATAATGTTAGATGCACTGGTGACAATTGGTCGAATGCTGTTCATTCATCTAGGGTGCACTTGAATACAATTCCATCGAGCAACCTTTCTAATGTTGCTACTTCCTACCATAGTCAGTTGAGAGACAATACTACCAGTGCATTGCATATTGGAAATTGTCTTTCTGACATCTCTTCTATTACTTCAATATCTACTCAGTCCCATGATTCAAGAATGGATTCTCAACGTCAAGCAGCCACAACAAGCAACAGGTTTGATCAAATGATCTCAAAGGTTCCTGTTCAAGATTGGAATGATCATAAAGAGGATTCCTATTACCACACAACTATGGCCTGTAGCTCATCAAATTCTTTGATACCAGTGAATGGTGCTGCAGAGACTTTGCCCAAACGCTTGGAAAATCAGAACATAATCTTCTCCAGCAGCAAGGATTTTAATGTGACTAGTCAAGCAAATGTTCTTGATCATGCAATGGTGGAACATGATCAATTCAAGAAATCAACCATGGAGACATCACTCATGTTGAAACAAGGGTACCTGTATGATCATCAGCAAAAGATGCAATCTAGACTATCATCAAGTAACTGCGGCTCCTTGGAAGACATAGCATGTGCGATGATGAAACAGGAACAAGATGATGGAAAATTATTGGAAGGAGACTTTGGATGTGATAATTATCCCATCGGAACATGCATGTGA 2070 41.88 MTVEPRLDDPIDQFPTGMRVLAVDDDPTCLLILETLLRRCQYHVTTTNQAIMALKLLRENKNKFDVVISDVHMPDMDGFKLLELVGLEMDLPVIMLSANGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRKKFDPKDRMNSGNQDRPDSENGEEAADPNGKFNKKRKDQNYNEDDDQDYGQENDDSSTQKKPRVVWSVELHRKFVNAVNQLGIDKAVPKKILDLMNVEKLTRENVASHLQKYRLYLKRISCVANQQANMVTALSSADPSYLRIGSLSGIGNFHSLTGPPQFPNTAYRSIPTTGMLGRLNSPACMGMHGLSSPGTVQLSNLNNSSNDQTTFQPIMLSGNRSGNIFRGMPEPSEIDQLQHVKHGTHADSLSSAFDERTVFPASIGLPNANMSSSTLSNPLLGLTNDPLISEVQHHEVNGGRKFGTPSSISVVSSNSDSLRPSLDNVRCTGDNWSNAVHSSRVHLNTIPSSNLSNVATSYHSQLRDNTTSALHIGNCLSDISSITSISTQSHDSRMDSQRQAATTSNRFDQMISKVPVQDWNDHKEDSYYHTTMACSSSNSLIPVNGAAETLPKRLENQNIIFSSSKDFNVTSQANVLDHAMVEHDQFKKSTMETSLMLKQGYLYDHQQKMQSRLSSSNCGSLEDIACAMMKQEQDDGKLLEGDFGCDNYPIGTCM 689
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 26970754 26975124 - CaPI482276_05g018100.1 Cam05g1810 127214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam05g1810 689 SMART REC_2 18 130 IPR001789 GO:0000160(InterPro)
Cam05g1810 689 NCBIfam myb-like DNA-binding domain, SHAQKYF class 197 250 IPR006447 GO:0003677(InterPro)
Cam05g1810 689 PIRSF RR_ARR_type-B 1 689 IPR017053 GO:0003677(InterPro)|GO:0003700(InterPro)|GO:0009736(InterPro)
Cam05g1810 689 PANTHER TWO-COMPONENT RESPONSE REGULATOR 16 373 IPR045279 GO:0009736(InterPro)
Cam05g1810 689 MobiDBLite consensus disorder prediction 141 180 - -
Cam05g1810 689 Pfam Myb-like DNA-binding domain 199 249 IPR001005 -
Cam05g1810 689 FunFam Two-component response regulator 193 256 - -
Cam05g1810 689 Gene3D - 193 256 - -
Cam05g1810 689 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 194 253 IPR017930 -
Cam05g1810 689 FunFam Two-component response regulator 18 176 - -
Cam05g1810 689 Pfam Response regulator receiver domain 20 128 IPR001789 GO:0000160(InterPro)
Cam05g1810 689 CDD REC_typeB_ARR-like 20 134 - -
Cam05g1810 689 MobiDBLite consensus disorder prediction 141 196 - -
Cam05g1810 689 ProSiteProfiles Response regulatory domain profile. 19 134 IPR001789 GO:0000160(InterPro)
Cam05g1810 689 Gene3D - 17 152 - -
Cam05g1810 689 SUPERFAMILY Homeodomain-like 194 254 IPR009057 -
Cam05g1810 689 SUPERFAMILY CheY-like 16 142 IPR011006 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam05g0746 Cam-Chr5:6486038 Cam05g1810 Cam-Chr5:26970754 6.10E-87 dispersed
Cam05g1810 Cam-Chr5:26970754 Cam11g0360 Cam-Chr11:5114880 3.50E-109 dispersed
Cam05g1810 Cam-Chr5:26970754 Cam06g1357 Cam-Chr6:24953391 1.30E-132 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51962 PF00072 Response_reg 8.90E-23 CL0304 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam05g1810 K14491 - csv:101215220 1271.91