Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam05g1815 ATGGCCAGACCGCAAAAGCGCTACCGTGGTGTAAGACAAAGGCATTGGGGCTCTTGGGTTTCTGAAATTCGTCATCCTTTATTGAAAACAAGAATTTGGCTGGGAACATTTGAAACCGCGGAAGATGCTGCGAGAGCTTATGATGAAGCTGCAAGATTAATGTGTGGCCCAAAAGCAAGAACGAATTTTCCATACAATCCAAATGCAATTCAATCCTCGAATTCGAGGATTTTATCGGCTAATTTGACTGCGAAATTGCATAGGTGTTATATGGCTTCTTTGCAGATTAGTAACCAAGCTTCAGGGGAGTTTAAAAGAGACATTCCGGCGGTATTTCCGGCATCAACGCCGCTACCTCATGCGATTGTTGGCTCCGGTGTGGCCAGTTCGGCGGTGGAGGAGATTGGACCGGCGGCGGAGCAAGGGCCGTGTGCGGCGGATTGGATGGTGAGAAGTGTGAAAATGGAAAGTGAATTTGGGGAGTTGAAATTGTTGGAAGATGATCACATTGAGCAAATGATTGAGGAACTTCTTTATTATGGATCCATGGAGTTTTGTCTGTGA 564 46.1 MARPQKRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPKARTNFPYNPNAIQSSNSRILSANLTAKLHRCYMASLQISNQASGEFKRDIPAVFPASTPLPHAIVGSGVASSAVEEIGPAAEQGPCAADWMVRSVKMESEFGELKLLEDDHIEQMIEELLYYGSMEFCL 187
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 27029551 27030194 - CaPI482276_05g018150.1 Cam05g1815 127219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam05g1815 187 Gene3D AP2/ERF domain 6 65 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam05g1815 187 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam05g1815 187 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 4 111 IPR050913 -
Cam05g1815 187 FunFam Ethylene-responsive transcription factor 2 6 65 - -
Cam05g1815 187 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam05g1815 187 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam05g1815 187 Pfam AP2 domain 7 56 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam05g1815 187 SUPERFAMILY DNA-binding domain 7 66 IPR016177 GO:0003677(InterPro)
Cam05g1815 187 CDD AP2 6 66 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam05g1815 187 SMART rav1_2 7 70 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam05g1815 Cam-Chr5:27029551 Cam08g1823 Cam-Chr8:24320777 2.40E-52 dispersed
Cam05g1815 Cam-Chr5:27029551 Cam07g1294 Cam-Chr7:27307607 2.80E-29 wgd
Cam05g1815 Cam-Chr5:27029551 Cam08g1822 Cam-Chr8:24313592 1.40E-52 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51964 PF00847 AP2 6.80E-12 CL0081 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam05g1815 - - - 0.0