Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam05g1822 ATGGATCAAGGAATTCCCTCTTTCGTGGTCCCCAGTTCTCCTTCATCCACGTGTTCTCTTCTCATTCGCTTATCTCAAGCGTGCCTCCTTAGCGGTCCCCACAAGTGGTCCAAACGACCACAGCGCGACGCGTGTCGACCGGTCGTTGTCCCGCGAGTGGCGGAGAGAGAACCGACGCAATTCCCTACTTCCCCAACCGGTGGCAGGTGGAACGGGATCCACCGCCATGGCTACATAATCACTGACCCATTTCTCAAATACCTCGTTTCCTTCTCTCTCCCCTTTCCCATGGCGTATCACAATCACCTCTCACAAGATCTTCCTCTTCACTTCTCTGACCACCACCAAAATCAGCCTCTCTCTGATACTTCTCTCCGTACCATTTTGCCGGACCAACTTCCCGGCGCCCACTCCTCACCGGACCCCAAGTCTCACCAACCCCATCACCACCATCACCATCATCCGCTTCAGACGGCACCGAATTGGCTCAACAACGCACTTCTTCGCAACCAAAACCCCCATTCTCACTACTCTACCGACACCACCGCCACCGCCGCCGCCGCGGCCAATACTAATTTCCTTAACCTTCACACCACTGCATCCGATTCCACCGTTTCTCACTCCTCTAACCAATGGCTTTCCCGCCCGATCCTCCACCGTAACCACAGCGATGTCATCGACGATGTCGCCGCTGCCGCTGCCGGTGATGCTATGATCGGTGCTGCCACTGCTGCGCTCTCTCACGATTCTGGCGACATGAAGAACGATGCTAATAGCGGGGATGGATTGAACAAGAGCGAGGGTATGGTGATGGAAACTGGTGCCGGCGGTGAAGGGGTTTTGAATTGGCAACATGCTCGTTATAAAGCTGAGATTCTTGCTCATCCTCTTTACGAGCAGCTTCTTTCCGCTCATGTCGCTTGCCTTCGCATCGCAACACCGGTCGATCAATTACCGAGGATCGATGCACAGCTCGCTCAGTCGCAGAATGTCGTCGCTAAGTACTCCGCCTTAGGCCACTCCGCTCCGCCGTCCATGGTTGGTGATGATAAAGAGCTTGATCAGTTCATGACGCATTATGTTCTTTTGCTTTGTTCATTCAAAGAACAACTTCAACAACATGTTCGAGTCCATGCAATGGAAGCAGTAATGGCTTGCTGGGACATTGAGCAGTCCCTACAAAGCTTAACAGGAGTTTCACCAGGTGAAGGTACAGGAGCAACAATGTCGGACGACGACGACGACCAAGTCGATAGCGATGCAAATCTGTTCGATGGAAGTTTAGAGGGTCCAGACACCATGGGGTTCGGCCCTCTTATTCCCACAGAGAGCGAGAGATCCTTGATGGAGAGGGTCAGGCAAGAACTGAAGCATGAATTAAAAGCGGGTTACAAGGAGAAAATTGTGGATATAAGGGAAGAAATTCTGAGAAAGAGAAGAGCTGGAAAACTCCCCGGTGACACCACCTCTGTCCTCAAACAATGGTGGCAATCACATTCTAAATGGCCTTATCCTACAGAGGAAGACAAGGCAAGGTTAGTGCAAGAAACTGGTCTACAACTGAAACAGATAAACAATTGGTTCATTAACCAAAGGAAGAGAAACTGGCACAGCAATCCTTCAAGTTCAACAAACTTGAAAAGCAAACGCAAAAGAAGTAATGCAGGTGAAAACAGCAGCGACCGTTTCAAATGA 1695 50.91 MDQGIPSFVVPSSPSSTCSLLIRLSQACLLSGPHKWSKRPQRDACRPVVVPRVAEREPTQFPTSPTGGRWNGIHRHGYIITDPFLKYLVSFSLPFPMAYHNHLSQDLPLHFSDHHQNQPLSDTSLRTILPDQLPGAHSSPDPKSHQPHHHHHHHPLQTAPNWLNNALLRNQNPHSHYSTDTTATAAAAANTNFLNLHTTASDSTVSHSSNQWLSRPILHRNHSDVIDDVAAAAAGDAMIGAATAALSHDSGDMKNDANSGDGLNKSEGMVMETGAGGEGVLNWQHARYKAEILAHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAQSQNVVAKYSALGHSAPPSMVGDDKELDQFMTHYVLLLCSFKEQLQQHVRVHAMEAVMACWDIEQSLQSLTGVSPGEGTGATMSDDDDDQVDSDANLFDGSLEGPDTMGFGPLIPTESERSLMERVRQELKHELKAGYKEKIVDIREEILRKRRAGKLPGDTTSVLKQWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPSSSTNLKSKRKRSNAGENSSDRFK 564
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 27122722 27131086 + CaPI482276_05g018220.1 Cam05g1822 127226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam05g1822 564 MobiDBLite consensus disorder prediction 550 564 - -
Cam05g1822 564 SMART ELK_2 455 476 IPR005539 GO:0003677(InterPro)
Cam05g1822 564 MobiDBLite consensus disorder prediction 397 416 - -
Cam05g1822 564 MobiDBLite consensus disorder prediction 532 564 - -
Cam05g1822 564 CDD homeodomain 478 539 IPR001356 GO:0003677(InterPro)
Cam05g1822 564 ProSiteProfiles 'Homeobox' domain profile. 475 538 IPR001356 GO:0003677(InterPro)
Cam05g1822 564 MobiDBLite consensus disorder prediction 129 158 - -
Cam05g1822 564 Gene3D - 476 537 - -
Cam05g1822 564 MobiDBLite consensus disorder prediction 532 549 - -
Cam05g1822 564 SMART KNOX1_2 286 330 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Cam05g1822 564 SMART HOX_1 477 542 IPR001356 GO:0003677(InterPro)
Cam05g1822 564 ProSiteProfiles ELK domain profile. 455 475 IPR005539 GO:0003677(InterPro)
Cam05g1822 564 Pfam Homeobox KN domain 495 534 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Cam05g1822 564 Pfam KNOX1 domain 288 329 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Cam05g1822 564 SUPERFAMILY Homeodomain-like 477 541 IPR009057 -
Cam05g1822 564 SMART KNOX2_2 343 398 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Cam05g1822 564 Pfam KNOX2 domain 347 397 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Cam05g1822 564 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 233 546 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cam05g1822 564 FunFam homeobox protein knotted-1-like 3 isoform X1 476 537 - -
Cam05g1822 564 Pfam ELK domain 455 476 IPR005539 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam05g1822 Cam-Chr5:27122722 Cam05g1932 Cam-Chr5:28245587 5.00E-29 dispersed
Cam01g0323 Cam-Chr1:3604617 Cam05g1822 Cam-Chr5:27122722 2.30E-105 transposed
Cam05g1822 Cam-Chr5:27122722 Cam08g1818 Cam-Chr8:24258528 2.10E-184 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51965 PF03791 KNOX2 2.50E-21 No_clan Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam05g1822 - - - 0.0