Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam05g1838 ATGAAGCAGAGTATATCTGAGGCAGTATCTTCATCATCCACCACGGGGTTATCGGAGCAGTCGCAATCGTCGTCGTCGTCGTCGTCATCGTCGACGACGCCGTTGGAGAAGCCTCAATCGATATCGGCTGCAGCGGCGGCGGAGGATTTGGCCGTCGGGTCAAGGGATGGCGGCGGGGCGCAGGAAACGGTGACTGTCGATCGACGAGGGGACTTCTCCGCGGTGTGTAGATGGACAGTACAAAATTTTCCAAGAATCAAGGCTAGGGCTCTATGGAGCAAGTATTTTGAGGTTGGAGGTTACGATTGCCGTCTGTTGATATATCCAAAGGGGGATTCTCAAGCACTGCCGGGGTATATTTCAATCTACCTTCAAATCGTGGACCCGCGCGGCACATCATCTTCCAAATGGGATTGCTTCGCTAGCTACCGTCTGGCCATCGTCAACGTTCTCGATGATTCCAAGACCGTTCATCGGGATTCATGGCACCGTTTCTCGAGCAAGAAGAAGTCACATGGATGGTGCGATTTTACTCCCTCTTCCACCGTGTTTGATTCTAAGCTCGGTTATTTGTTTAATAATGAGTCTATTTTGATCACTGCTGATATTCTAATCCTCAATGAGTCTGTAAACTTTACCCGGGATAACAATGAGCCAGCCTCATCTATGATGATGGCATCCTCGGTTGTTGCTTGCCCTGCGCCCGAGGTGCTCAGCGGCAAGTTCACCTGGAAAGTTCATAATTTTAGTTTGTTTAAAGAGATGATAAAAACACAGAAAATAATGAGTCCCGTGTTCCCAGCTGGAGAGTGTAATTTGAGGATTAGTGTCTATCAGAGCTCAGTTAATGGGGCTGAGTATTTATCAATGTGTCTAGAGAGCAAGGATACCGAAAAGACAGTAATATTACCTGACAGGAGTTGTTGGTGTTTGTTTCGAATGTCCGTGTTAAACCAGAAGCCTGCTTTGAATCACATGCATCGAGACTCATATGGGAGATTTGCAGCTGATAATAAGAGTGGGGACAACACCAGTTTGGGGTGGAATGACTATATGAAGATGTCTGATTTTGTTGGGCAAGATTCTGGTTTTTTAGTTGACGATACCGCTGTGTTTAGTACTTCCTTTCATGTGATCAAGGAGTTTAGTAATTTTTCAAAGAATGGTGGATTAATTGGAGGTAGAAATGGAAGTGGAATTAGAAAATCAGATGGTCACATGGGGAAATTTACGTGGAGGATTGAGAACTTCACAAGGTTAAAGGACCTCTTGAAGAAGAGGAAGATTACAGGTCTTTGCATCAAGAGCAGGAGATTTCAGGTTGGGAACCGCGACTGTCGTCTCATTGTTTATCCTCGAGGGCAGTCTCAACCACCATGTCACCTTTCAGTCTTTCTTGAAGTTACGGATTCAAGAAATACTTCCAGTGATTGGAGTTGTTTTGTGAGTCATCGGTTGTCAGTAGTAAACCAGAAGATGGAAGAGAAATCTGTTACAAAGGAGTCTCAAAACCGGTACTCTAAAGCTGCAAAAGACTGGGGATGGCGTGAATTTGTCACACTTACCAGCCTCTTTGATCAGGATTCCGGGTTTCTTGTTCAGGATACTGTAATATTCTCAGCGGAGGTCCTTATATTAAAGGAGACATCTGTGATGCAGGATTTTATTGATCAAGACATGGAGCCAACTGGTTCCAGCTCTCTGACGGATAAGGTAGCAAAAAAAAGTTCATTTACATGGAAGGTGGAGAACTTTTTGTCCTTCAAGGAAATAATGGAGACTCGTAAAATTTTTAGTAAATTCTTTCAAGCTGGTGGATGTGAGCTCCGTATTGGTGTCTATGAGTCCTTTGACACCATTTGCATCTATCTGGAGAGTGATCAGTCTGTTGGCAGTGATCCAGATAAAAACTTTTGGGTCAGATACAAAATGGCCGTGGTGAATCAAAAATACCCTGCCAAAACTGTGTGGAAGGAGTCTTCTATCTGTACAAAGACATGGAATAATTCTGTTTTGCAATTCATGAAGGTTTCAGATATGCTAGAGGCAGAAGCGGGGTTTCTTGTACGAGATACAGTTGTTTTCGTATGTGAAATATTGGATTGCTGCCCTTGGTTTGAGTTTTCAGATCTTGAGGTTTTGGCTTCAGAAGATGATCAGGATGCGTTGACTACTGATCCAGACGAACTCATTGATTCAGAAGATAGTGAAGGAATAAGTGGTGATGAAGAAGACATTTTTAGAAACCTTCTATCTACAGCTGGATTTCATCTAACATACGGGGATAATCCTTCACAACCACAAGTCACTTTGCGAGAAAAACTATTAATGGATGCTGGTGCAATTGCAGGCTTTCTTACTGGACTTCGTGTTTATCTTGATGATCCTGCTAAAGTTAAGCGCTTACTTCTTCCTACTAAGCTATCCAGTAGCAATGATGGGAAGAAGGTCTCAAAGACAGATGAGTCGTCCCCCAGTTTAATGAATTTGCTGATGGGAGTCAAAGTATTACAGCAGGCAATTATTGATTTACTGTTGGATATAATGGTCGAGTGTTGTCAACCTTCAGAAGGTGGCTCTGGAGATCATTTGGAAGCAAATTCAAAGCCTTCTGTTTCTAGCAGTGGAGACACTACTGCACCACTGGAAGGTGAAACTGAAAATGCAGCAACAGAGGCTGCAGATTCTCCTCCATTTCAGAGATTGGATTCCATTGAGGAAAGTAGTAGTGCTCCTGCTGTACAAAGCTCTGACATGATTAGAACTGACAGGCAGGGTAAGTCTCTACCTGAAGAGTTAATACATCCACCTGAAACATCTGCTGGGGTTTCAGAGAATGTCTTCCTTCGTACAAAGACCAAGTGGCCTGAGCAATCTGAGGAGCTATTAGGCTTGATTGTAAATTCATTGAGAGCCCTAGACGGGGCTGTCCCTCGAGGATGTCCTGAGCCAAGAAGACGGCCTCAGTCTGCACAAAAGATTGCTCTTGTGCTGGATAAAGCTCCCAGACATCTACATTCTGACCTGGTTGCATTAGTACCTAAATTGGTTGAGCATTCAGAACATCCACTGGCTGCTGGTGTGCTTCTAGAAAGGCTTCATCAGCCTGGTGCTGAGCCAGCACTGCGGGTACCTGTTTTTGGTGCTCTTAGTCAGCTGGAGTGTGGCACCGAAGTTTGGGAACAAGTTCTGTTTAAATCTATTGAGTTTTTAGCAGATTCAAATGATGAGCCTCTTGCTGCAACTATAGATTTTCTTTTCAAAGCTGGAGCTCAGTGCCAACATCTCTCTGAAGCGGTGAGATCCGTACGTGGTAGGCTGAAGAATTTGGGCATGGAGGTTTCCCCATGTGTTCTTGATTTATTAAGTAAAACTGTAAATAGCTGGGGTGATGTTTCTGATATTATACTCAGAGATATTGATTGTGATGATGATGCTGATGATTTCTGCTCAAAAATATCACGTGAGCTTTTCCTATTTGGTGAACCTGGCCCGACTTCAGAAAGTTTGCATCCGTTGGATGAACAGGATTTACATGCTGCCCGTCATTTTTCTGATATTTATATCTTGATTGAGATGTTATCGATTCCTTGTCTTGCCGTTGAAGCGTCACAGACATTTGAGAGAGCTGTAGCTCGTGGTGCCATCACGGCTAAATTTGTTGCTGTGGTGTTGGAAAAACGTCTTGCTCAAAAAGCAAACAGCAACACTAGATTCGTAGCTGAAAGCTTCCAGCCTGGAGATTCTGTAATAGATGGAGAAACTAGTGAGCAGCTGAGAGTCCAGCGGGATGATTTTACGTCTATTGTTGGTCTTGCTGAAACATTAGCACTCTCTAGAGACCCTCGCGTTAGAGGATTTGTGAAAATGCTGTATCCATTATTGTTTAAGTGGTATGCAAGTGAGTCATATCGGGCCAGGATGCTAAAAAGATTAGTTGACCGTGTAACCAGCAGTGCAGACAATAACCGTGAAGTAGATATGGATTTGGAGATTCTGGTTATGTTGATTGGTGATGAACAAGAAATAATCAGACCTGTGCTAAATATGATGCGAGATGTTGCAGAACTAGCAAATGTTGACCGTGCTGCTCTCTGGCACCAGTTATGTGCTACTGAAGATGAAATCATCCGTATCCGTGAAGAAAGCAAAGTAGAAATTTCAAATATGATGAAAGAAAAAACTGTTCTGTCACAAAAATTGAGTGAATCTGATGCTATGAACAATCGCCTTAAGAATGAGATGAAGGCAGAGATGGAGCGATTTTCTCGCGAGAAAAAGGAACTTTCTGAACAAATACATGACATTGAGAGTCAGCTTGAGTGGCTTCGCTCTGAGCGAGATGATGAGATTGTGAAGTTAACAGCAGAGAAGAAAGTTCTCCATGATCGTCTCCATGATGCTGAGACTCAAATTGCACAATTGAAATCCCGAAAACGTGATGAGATGAAGAAAGTAGTGAAGGAAAAAAATGCACTTGCTGAGAGATTGAAGAGTGCTGAAGCTGCTCGAAAAAGATTTGATGAACAACTGAAACGGTATGCAAATGAGAATATGACAAGGGAAGAAATCCGACAGTCGCTAGAAGATGAAGTTCGCAGGCTTACACAAACAGTTGGACAGACTGAAGGAGAAAAGAGGGAGAAGGAGGAGCAGATTGCTCGATGTGAAGCATATATTGATGGGATGGAAGCTAAATTGCAGGCCTGCCAGCAATATATCCATTCACTTGAAGCATCACTACAAGAGGAAATGTCAAGACATGCCCCTCTGTATGGCGCTGGTTTGGAAGCTCTGTCAATGAAGGAGCTAGAGACATTATCCCGAATTCACGAAGAAGGATTAAGGCAAATTCATACTCTTCAGCAGCGCAAAGGGAGTCCGGCTGGCAGTCCTCTTGTGAGCCCCCATTCCCTCTCTCACAGTCATGGGTTGTACACTTCTGCACCACCGCCAATGGCAGTCGGGATGCCTCCTTCACTCATTCCCAATGGCTCAGGGATCCACAGCAATGGGCATGTGAATGGTGGTGCAGTTGGACCATGGTTCAACCATTCTTGA 5061 43.81 MKQSISEAVSSSSTTGLSEQSQSSSSSSSSSTTPLEKPQSISAAAAAEDLAVGSRDGGGAQETVTVDRRGDFSAVCRWTVQNFPRIKARALWSKYFEVGGYDCRLLIYPKGDSQALPGYISIYLQIVDPRGTSSSKWDCFASYRLAIVNVLDDSKTVHRDSWHRFSSKKKSHGWCDFTPSSTVFDSKLGYLFNNESILITADILILNESVNFTRDNNEPASSMMMASSVVACPAPEVLSGKFTWKVHNFSLFKEMIKTQKIMSPVFPAGECNLRISVYQSSVNGAEYLSMCLESKDTEKTVILPDRSCWCLFRMSVLNQKPALNHMHRDSYGRFAADNKSGDNTSLGWNDYMKMSDFVGQDSGFLVDDTAVFSTSFHVIKEFSNFSKNGGLIGGRNGSGIRKSDGHMGKFTWRIENFTRLKDLLKKRKITGLCIKSRRFQVGNRDCRLIVYPRGQSQPPCHLSVFLEVTDSRNTSSDWSCFVSHRLSVVNQKMEEKSVTKESQNRYSKAAKDWGWREFVTLTSLFDQDSGFLVQDTVIFSAEVLILKETSVMQDFIDQDMEPTGSSSLTDKVAKKSSFTWKVENFLSFKEIMETRKIFSKFFQAGGCELRIGVYESFDTICIYLESDQSVGSDPDKNFWVRYKMAVVNQKYPAKTVWKESSICTKTWNNSVLQFMKVSDMLEAEAGFLVRDTVVFVCEILDCCPWFEFSDLEVLASEDDQDALTTDPDELIDSEDSEGISGDEEDIFRNLLSTAGFHLTYGDNPSQPQVTLREKLLMDAGAIAGFLTGLRVYLDDPAKVKRLLLPTKLSSSNDGKKVSKTDESSPSLMNLLMGVKVLQQAIIDLLLDIMVECCQPSEGGSGDHLEANSKPSVSSSGDTTAPLEGETENAATEAADSPPFQRLDSIEESSSAPAVQSSDMIRTDRQGKSLPEELIHPPETSAGVSENVFLRTKTKWPEQSEELLGLIVNSLRALDGAVPRGCPEPRRRPQSAQKIALVLDKAPRHLHSDLVALVPKLVEHSEHPLAAGVLLERLHQPGAEPALRVPVFGALSQLECGTEVWEQVLFKSIEFLADSNDEPLAATIDFLFKAGAQCQHLSEAVRSVRGRLKNLGMEVSPCVLDLLSKTVNSWGDVSDIILRDIDCDDDADDFCSKISRELFLFGEPGPTSESLHPLDEQDLHAARHFSDIYILIEMLSIPCLAVEASQTFERAVARGAITAKFVAVVLEKRLAQKANSNTRFVAESFQPGDSVIDGETSEQLRVQRDDFTSIVGLAETLALSRDPRVRGFVKMLYPLLFKWYASESYRARMLKRLVDRVTSSADNNREVDMDLEILVMLIGDEQEIIRPVLNMMRDVAELANVDRAALWHQLCATEDEIIRIREESKVEISNMMKEKTVLSQKLSESDAMNNRLKNEMKAEMERFSREKKELSEQIHDIESQLEWLRSERDDEIVKLTAEKKVLHDRLHDAETQIAQLKSRKRDEMKKVVKEKNALAERLKSAEAARKRFDEQLKRYANENMTREEIRQSLEDEVRRLTQTVGQTEGEKREKEEQIARCEAYIDGMEAKLQACQQYIHSLEASLQEEMSRHAPLYGAGLEALSMKELETLSRIHEEGLRQIHTLQQRKGSPAGSPLVSPHSLSHSHGLYTSAPPPMAVGMPPSLIPNGSGIHSNGHVNGGAVGPWFNHS 1686
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 27314038 27324905 - CaPI482276_05g018380.1 Cam05g1838 127242

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam05g1838 1686 PANTHER TRAF-LIKE FAMILY PROTEIN 18 1686 - -
Cam05g1838 1686 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 565 701 IPR008974 GO:0005515(InterPro)
Cam05g1838 1686 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 235 383 IPR008974 GO:0005515(InterPro)
Cam05g1838 1686 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 72 218 IPR008974 GO:0005515(InterPro)
Cam05g1838 1686 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 405 564 IPR008974 GO:0005515(InterPro)
Cam05g1838 1686 ProSiteProfiles MATH/TRAF domain profile. 575 699 IPR002083 GO:0005515(InterPro)
Cam05g1838 1686 ProSiteProfiles MATH/TRAF domain profile. 239 376 IPR002083 GO:0005515(InterPro)
Cam05g1838 1686 MobiDBLite consensus disorder prediction 1621 1645 - -
Cam05g1838 1686 Pfam MATH domain 409 543 IPR002083 GO:0005515(InterPro)
Cam05g1838 1686 Pfam MATH domain 577 699 IPR002083 GO:0005515(InterPro)
Cam05g1838 1686 Pfam MATH domain 241 373 IPR002083 GO:0005515(InterPro)
Cam05g1838 1686 Pfam MATH domain 77 197 IPR002083 GO:0005515(InterPro)
Cam05g1838 1686 MobiDBLite consensus disorder prediction 857 940 - -
Cam05g1838 1686 CDD MATH 240 372 IPR002083 GO:0005515(InterPro)
Cam05g1838 1686 MobiDBLite consensus disorder prediction 1 39 - -
Cam05g1838 1686 Gene3D - 1443 1636 - -
Cam05g1838 1686 ProSiteProfiles MATH/TRAF domain profile. 407 543 IPR002083 GO:0005515(InterPro)
Cam05g1838 1686 SUPERFAMILY TRAF domain-like 237 383 - -
Cam05g1838 1686 Coils Coil 1451 1566 - -
Cam05g1838 1686 Coils Coil 1401 1446 - -
Cam05g1838 1686 SUPERFAMILY TRAF domain-like 575 700 - -
Cam05g1838 1686 CDD MATH 577 699 IPR002083 GO:0005515(InterPro)
Cam05g1838 1686 CDD MATH 77 203 IPR002083 GO:0005515(InterPro)
Cam05g1838 1686 SUPERFAMILY TRAF domain-like 408 549 - -
Cam05g1838 1686 CDD MATH 408 543 IPR002083 GO:0005515(InterPro)
Cam05g1838 1686 ProSiteProfiles MATH/TRAF domain profile. 73 203 IPR002083 GO:0005515(InterPro)
Cam05g1838 1686 MobiDBLite consensus disorder prediction 1 42 - -
Cam05g1838 1686 MobiDBLite consensus disorder prediction 866 885 - -
Cam05g1838 1686 MobiDBLite consensus disorder prediction 902 923 - -
Cam05g1838 1686 MobiDBLite consensus disorder prediction 1621 1651 - -
Cam05g1838 1686 SMART math_3 580 680 IPR002083 GO:0005515(InterPro)
Cam05g1838 1686 SMART math_3 244 357 IPR002083 GO:0005515(InterPro)
Cam05g1838 1686 SMART math_3 412 524 IPR002083 GO:0005515(InterPro)
Cam05g1838 1686 SMART math_3 75 183 IPR002083 GO:0005515(InterPro)
Cam05g1838 1686 SUPERFAMILY TRAF domain-like 74 211 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam05g1838 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam05g1838 Cam-Chr5:27314038 Cam01g0757 Cam-Chr1:8407704 4.70E-06 dispersed
Cam05g1838 Cam-Chr5:27314038 Cam10g1755 Cam-Chr10:31602427 7.40E-20 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g501 . . . Bda03g00075 . . Bma04g00072 . . . Cma01g01513 . Car09g00391 . . . Cpe06g00327 . . . . . . . Cla05g01725 Cam05g1838 Cec05g1852 Cco05g1909 Clacu05g1825 Cmu05g1709 Cre05g1840 . . Cone17ag1011 . Lsi04g02117 Csa03g04321 Chy04g00379 . . . . . . Bpe04g00061 . . Sed05g1711 Cmo01g01566 Cmo09g00453 Cma09g00443 . . . . Cpe02g00443 Bhi09g02224 Tan01g3626 Cmetu04g2170 . Hepe01g2009 Mch11g0545 . . . . . . . . . . . Cme04g00422
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007058 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 3 1 2 37