Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam05g1843 ATGATGCAGAATCGAAGTCCGCCCAAGCATAGACATGATGGAACCTCGCCGTTGCCTCTTGGAATGGACTGGAGTCCTCCTCCTCGAAAATGGAATGGGAAGGACACAGTTTGGCCTCATGACCATCACACAGGATGGAGTTACTGTGTCATAATACCTTCATGGGTTGCCCTTCCTAAAACACGAACTGCAGATCCCATAGTGTTCTACAGGGTTCAGGTTGGTGTACAGTCACCTGAAGGGATCACAGCAATTCGGGGAGTATTAAGGCGATTTAATGATTTCATGAATTTATTTTCAGATGTTAAAAAGGCTTTTCCAAAGAAAATTATTCCTCCAGCTCCACCCAAAGGAATCTTACGGATGAAAACCAGAGCACTTTTAGAAGAGAGAAGGCGCTCATTGGAGGAGTGGTTGACGAAGCTGCTGTCTGACATTGATATATCAAGAAGTGTTGCAGTAGCGTCCTTCCTTGAGCTGGAAGCTGCTGCTAGGTCTTCTTTCCAAAATGATAATCAGGGGCCTTCAGGTGAATACCCTGATTATAACAGCAAAATTTCGGCACATCAATCTCCTCCTAATTCAAGCTCATCTACTGTTGCTGGTGGTTTGTCGCTTACATCAGATTATGGTAGTGATACTGCTTATGAGGCCTCTGAACTTGGTACAGCAAGTCTGGGAAGAGATGATAATTCTGAGATTGCCATAGATGATTTAGCTCTGGATGATGATCTTTCCAGTCCAATTGAAAAACTTGTGAAGTATGGATTGTCCAATATTGATGAGGGACTGTTTATGGGACAGACCATTCTAGAGCAGTTGGAAGGTCTTCCAAAACATAAAGCTCATCCTAGATATAATAACAATTTAAAGGATGGTCACAATGGTAATACTTCCAAGGCATCGTACTTGGATAAAAATGGACTGGTACCGTTTGCAGAGCCTGATCATGGCAAGGTAATTGTCCATGCTCGCAAGCTGTCTGATGAGAGTGTTGCAAGTGATGTAAGTTCTCTGAGAGGTGGAGAGAGTTCAAGCTTTTCACTTCAGAATTCAGTAGGCAATGGCTCACTTGACCATTCAGGTGCCGAGGTTTCAAATGCAATTGAATTTCATAGCAACCCTGAATTGCATTTTTCACATGATGCACTCCTCTTCCCAAAGGATCATCGGCATAAAATGAATAGGGTTCTCTCAACAATGCATCAAAGGCTAGTGACAGCAAAAACAGACATGGAGGACCTTATATCAAGATTGAATCAGGAAATAACCGTGAAAGATTACCTTGCAACAATGGTTAAGGATTTGGAAGTAGAACTTGAAACAAATAAGCAGAAAAGTAAAGAAAACCTTCAACAAGCTATTTTGATGGAGAGGGAAAAAGTTACACAAATGCAGTGGGAAATGGAGGAACTTCGTCACAAATCATTGGAAATGGAGTTAAAATTGAAGTCTAAAGAGGGTGAAAATTCATTTTCAGTGCCTACAAAAGAGTTTACCCTCCAGGAGAAAGTCGCCTTGCAAGAAGAGCTTGAATCCACGAAAGAGCAACTAAAGAATGTTTCTAAGCAATTTGAAGAGCTTGAAGCAAAATCAAAAGGAGACATCAGGGTTCTTGTTAAAGAGGTCAAATCTCTTCGGAGTACCCAAGCCAGACTTAAACAAGAGCTTAGTCAAACTCTTCAACAGAAGTCTGAGACTGAGGGATTCCTTCAACAGGAAAGAGAAATGAGACAGCATGCAAACACCGCTTGGAGAAAGCTGCTGTCTGAATGTAGGAGCCTACATGGTCGGCTTAAAAAATGCAGCATGAATTTTTCAGCAGACGATGGTTACAACCATGATGTGAAATCATCATCCTTATCTAATGCCTTGGATTTGTTGACAACATCTGATGACCAATTAAATTTCCTCCTGGCTGAGGCAAATCTTCTATCCGATGGCAAACAAACTGCTACTTCAATGGCAGATGATGACATTCAGGATGGCGACAACGATTCAGTTAAAGTAGAAGCAGAGTTGAGGATGATACTTAAAGACATGTTCGCCGAAAACGCTAGGTTGAGGAAACAGGTCAATTCTTATTTCGGGCATAGTATGAGATTGAGGATGTCAAAGGAAGCTGATGGTGCAGAGGCTTCTTCTTCTTCACAAAATACTAAAGGGTCGCGGACCGACCATAGAACCCTGTTCAATAAGTGGAACGCATTAGCTGCCCGCTCTCCGGTTGGGCATAACCACAAAGCGCGCCAACAGTTTCTCTATCCATCATCAATGGCGGACGACGATTACAATGACCTCGACATGGGATATGAAGATGAGCCACCAGAACCCGAGATTGAGGAAGGTGCTGAGGAAGAATTAGATACTACTAACAATGATGATGTTGCTGGTGAACCCGTTGAAGCTGAGGAAAAGGAAGATGAAGAACCTGTTGAACGAGTGCGTAAAACGTCAAAATTTATGACTAAATATGAACGGGCTAGAATTTTGGGTACACGTGCCCTCCAAATCAGCATGAATGCTCCTGTGATGGTCGAGTTGGAGGGTGAGACTGATCCACTTGAGATTGCAATGAAGGAACTTCGTGAGCGGAAGATACCCTTCACCATCCGTCGCTACCTGCCAGATGGAAGTTATGAAGATTGGGGCGTTGATGAACTGATTGTGGAGGATTCTTGGAAGAGGCAAGTTGGTGGCGCTTGA 2706 42.98 MMQNRSPPKHRHDGTSPLPLGMDWSPPPRKWNGKDTVWPHDHHTGWSYCVIIPSWVALPKTRTADPIVFYRVQVGVQSPEGITAIRGVLRRFNDFMNLFSDVKKAFPKKIIPPAPPKGILRMKTRALLEERRRSLEEWLTKLLSDIDISRSVAVASFLELEAAARSSFQNDNQGPSGEYPDYNSKISAHQSPPNSSSSTVAGGLSLTSDYGSDTAYEASELGTASLGRDDNSEIAIDDLALDDDLSSPIEKLVKYGLSNIDEGLFMGQTILEQLEGLPKHKAHPRYNNNLKDGHNGNTSKASYLDKNGLVPFAEPDHGKVIVHARKLSDESVASDVSSLRGGESSSFSLQNSVGNGSLDHSGAEVSNAIEFHSNPELHFSHDALLFPKDHRHKMNRVLSTMHQRLVTAKTDMEDLISRLNQEITVKDYLATMVKDLEVELETNKQKSKENLQQAILMEREKVTQMQWEMEELRHKSLEMELKLKSKEGENSFSVPTKEFTLQEKVALQEELESTKEQLKNVSKQFEELEAKSKGDIRVLVKEVKSLRSTQARLKQELSQTLQQKSETEGFLQQEREMRQHANTAWRKLLSECRSLHGRLKKCSMNFSADDGYNHDVKSSSLSNALDLLTTSDDQLNFLLAEANLLSDGKQTATSMADDDIQDGDNDSVKVEAELRMILKDMFAENARLRKQVNSYFGHSMRLRMSKEADGAEASSSSQNTKGSRTDHRTLFNKWNALAARSPVGHNHKARQQFLYPSSMADDDYNDLDMGYEDEPPEPEIEEGAEEELDTTNNDDVAGEPVEAEEKEDEEPVERVRKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGA 901
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 27367998 27379585 + CaPI482276_05g018430.1 Cam05g1843 127247

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam05g1843 901 ProSiteProfiles PX domain profile. 48 165 IPR001683 GO:0035091(InterPro)
Cam05g1843 901 SMART PX_2 56 161 IPR001683 GO:0035091(InterPro)
Cam05g1843 901 Pfam PX domain 88 159 IPR001683 GO:0035091(InterPro)
Cam05g1843 901 Coils Coil 536 563 - -
Cam05g1843 901 MobiDBLite consensus disorder prediction 1 26 - -
Cam05g1843 901 SUPERFAMILY RPB6/omega subunit-like 759 891 IPR036161 GO:0003677(InterPro)|GO:0003899(InterPro)|GO:0006351(InterPro)
Cam05g1843 901 Coils Coil 469 489 - -
Cam05g1843 901 SMART RNA_pol_Rpb6_2 816 869 IPR006110 GO:0003677(InterPro)|GO:0003899(InterPro)|GO:0006351(InterPro)
Cam05g1843 901 MobiDBLite consensus disorder prediction 765 808 - -
Cam05g1843 901 Coils Coil 497 531 - -
Cam05g1843 901 Pfam RNA polymerase Rpb6 818 869 IPR006110 GO:0003677(InterPro)|GO:0003899(InterPro)|GO:0006351(InterPro)
Cam05g1843 901 Gene3D - 56 172 IPR036871 GO:0035091(InterPro)
Cam05g1843 901 ProSitePatterns RNA polymerases K / 14 to 18 Kd subunits signature. 823 837 IPR020708 GO:0003677(InterPro)|GO:0003899(InterPro)|GO:0006351(InterPro)
Cam05g1843 901 SUPERFAMILY PX domain 41 161 IPR036871 GO:0035091(InterPro)
Cam05g1843 901 MobiDBLite consensus disorder prediction 167 203 - -
Cam05g1843 901 MobiDBLite consensus disorder prediction 706 726 - -
Cam05g1843 901 MobiDBLite consensus disorder prediction 757 813 - -
Cam05g1843 901 FunFam Phox (PX) domain-containing protein 47 183 - -
Cam05g1843 901 FunFam DNA-directed RNA polymerases I, II, and III subunit RPABC2 759 892 - -
Cam05g1843 901 Gene3D - 761 892 IPR036161 GO:0003677(InterPro)|GO:0003899(InterPro)|GO:0006351(InterPro)
Cam05g1843 901 Hamap DNA-directed RNA polymerase subunit Rpo6 [rpo6]. 820 875 IPR006111 GO:0003677(InterPro)|GO:0003899(InterPro)|GO:0006351(InterPro)
Cam05g1843 901 PANTHER PX DOMAIN-CONTAINING PROTEIN EREL1-RELATED 1 718 IPR044588 GO:0015031(InterPro)
Cam05g1843 901 MobiDBLite consensus disorder prediction 710 725 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam05g1843 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam05g0942 Cam-Chr5:8530158 Cam05g1843 Cam-Chr5:27367998 1.10E-73 transposed
Cam05g1843 Cam-Chr5:27367998 Cam09g0293 Cam-Chr9:3406219 4.20E-70 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g498 . . . . . . . . . . Cma01g01508 . Car09g00394 . . . Cpe06g00330 . . . . . . . Cla05g01730 Cam05g1843 Cec05g1855 Cco05g1915 Clacu05g1831 Cmu05g1714 Cre05g1845 . Cone7ag1693 Cone17ag1014 Cone20ag0354 Lsi04g02120 Csa03g04325 Chy04g00375 . Blo17g00016 . . Bda13g01255 Bpe14g00585 . . Bma02g00020 Sed05g1708 Cmo01g01563 Cmo09g00456 Cma09g00449 . . . . Cpe02g00446 Bhi09g02227 Tan01g3629 Cmetu04g2606 . Hepe01g2012 Mch11g0548 . . . . . . . . . . . Cme04g00418
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006027 1 3 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 2 1 1 39