Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam05g1857 ATGGCGTCTTCGTCTTTATCGGCCTCAGCAAATTACTTCAGTTCCATTACCACCGTATCAGCAATTAGTGGTTGTAGTAATCAGAAGCTCAACCTAATTAACAATGGCTTCCATGCTTATTCTTCCCCTGCTCGATTCCCTCATCTAAATGTCAAGGCTGCGAAGAATGATCGGAACACAAAGCCTAATAGCGTGATATGTGGCGATTGCGATGGAAATGGTGCTGTTCTTTGCTCACAATGCAAAGGAAATGGAGTTAATGCTGTTGATTTCTTCAATGGACAGTTCAAAGCCGGCGAATCTTGTTGGCTGTGCGGTGGGAGAAAGGAAATGTTGTGTGGGAATTGCAATGGGGCTGGCTTCATTGGAGGTTTCCTCAGCACTTATGACCAATAG 396 44.7 MASSSLSASANYFSSITTVSAISGCSNQKLNLINNGFHAYSSPARFPHLNVKAAKNDRNTKPNSVICGDCDGNGAVLCSQCKGNGVNAVDFFNGQFKAGESCWLCGGRKEMLCGNCNGAGFIGGFLSTYDQ 131
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 27524808 27526106 - CaPI482276_05g018570.1 Cam05g1857 127261

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam05g1857 131 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 62 122 IPR036410 -
Cam05g1857 131 PANTHER PLASTID TRANSCRIPTIONALLY ACTIVE PROTEIN 14 127 - GO:0009570(PANTHER)|GO:0044183(PANTHER)|GO:0061077(PANTHER)|GO:0101031(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam05g1857 K27953 - - csv:101218754 242.662
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam11g0247 Cam-Chr11:3980782 Cam05g1857 Cam-Chr5:27524808 7.20E-20 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g471 . . . . . . . . . . . . . . . . . . . . . . . . Cla05g01744 Cam05g1857 Cec05g1869 Cco05g1932 Clacu05g1848 Cmu05g1729 Cre05g1861 . . . . . Csa03g04341 Chy04g00361 . . . . . . . . . Sed05g1697 . . . . . . . . Bhi09g02252 Tan01g3656 Cmetu04g0153 . Hepe01g2029 Mch11g0563 . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002678 1 2 0 1 1 1 3 1 1 2 2 1 1 2 2 1 2 2 2 1 2 2 2 1 2 2 2 4 4 3 53