Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam05g1861 ATGGAAGCAAATGCGGGATTGGTGGCTGGATCTTACAAGAGGAATGAACTTGTTCGGATTCGCCACGATTCCGATAGTGGGCCTAAACCTCTGAAGAATTTAAACAGCCAAACATGTCAAATATGTGGCGACACAGTTGGTCTTACGGCCTCTGGCGACGTCTTTGTTGCTTGCAATGAATGTGCCTTTCCCGTTTGTCGTCCTTGTTATGAGTATGAGAGGAAAGATGGAAACCAGTCTTGCCCTCAGTGCAAGACTAGATACAAGAGGCACAAAGGGAGCCCTCGCGTTGATGGTGATGATGATGAGGATGATGTGGATGACATTGAGAATGAGTTTAATTACGTCCAAGGAAGTGGCAAGACAAAACGACAGTGGCATGGGGAAGATGTTGAACTATCTACTTCTGCGAGACATGAGTCTCAACAGCCTATACCACTCCTGACAAATGGCCAATCAGTGTCGGGCGAAATTCCTTGTGCTACCCCTGACAATCAATCAGTGCGAACCACATCTGGTCCTTTGGGTCCTCCAGAAAAGCATATGCAATCCCATCCATATGTTGACCCACGGCAGCCAGTTCCTGTGAGAATTGTAGACCCATCAAAGGATTTGAATTCTTATGGCCTTGGGAATGTTGACTGGAAGGAAAGAGTGGAAGGTTGGAAACTGAAACAAGAGAAAAACATAATGCAGATGACAAGTAGGTACACTGAAGGGAAGGGGGACATGGAGGGCACTGGGTCAAATGGAGAAGAACTTCAAATGGCTGATGATGCTAGACAACCTTTGAGTCGTGTCGTTCCTATTCCATCCTCTCACTTGACCCCGTATCGTGTTGTGATCATACTTCGTCTTATTATTCTGGGCTTCTTCTTACAGTACCGTTTGACACACCCTGTGAAGGATGCATACCCCCTGTGGTTAACATCAGTTATTTGTGAAGTTTGGTTTGCCCTTTCCTGGCTTCTGGATCAGTTTCCAAAATGGTCTCCTGTCAATCGTGAGACCTTCCTTGAGAGACTTGCGCTAAGATATGATCGTGAAGGAGAACCATCACAGTTAGCTCCTGTTGATGTCTTTGTCAGTACAGTGGATCCACTCAAAGAGCCTCCACTTGTCACAGCAAACACTGTGCTTTCCATACTTGCTGTGGACTACCCTGTGGACAAAGTCTCCTGCTATGTATCAGATGATGGTTCAGCAATGCTTACTTTTGAAGCGCTCTCTGAAACTGCAGAATTTGCAAGGAAGTGGGTGCCCTTTTGCAAGAAGCACAACATTGAGCCGAGAGCCCCTGAATTTTATTTTGCTCAAAAAATAGATTACTTGAAGGACAAGATTAAACCTTCTTTTGTCAAAGAGAGGCGAGCAATGAAGAGAGAGTATGAAGAATTCAAGATTCGGATCAATGCGCTTGTTGCCAAAGCACAAAAGATGCCCGAGGAAGGTTGGACCATGCAGGATGGAACGCCATGGCCAGGAAACAATCCCAGGGATCATCCTGGAATGATACAGGTTTTCTTAGGCCACAGTGGAGGTCTTGATACTGATGGCAATGAACTACCACGACTTGTTTATGTTTCTCGTGAGAAGCGACCTGGTTTCCAGCACCACAAGAAAGCCGGAGCCATGAATGCATTGATCCGAGTTTCTGCTGTGCTTACTAATGGAGCATATCTATTGAATGTCGATTGTGATCACTACTTCAACAACAGCAAAGCTCTCAAGGAAGCCATGTGTTTCATGATGGACCCTGCTTATGGGAAGAAAACATGTTATGTACAGTTCCCACAACGTTTTGATGGCATTGATTTGCATGATCGATATGCCAATCGCAACATTGTCTTTTTTGACATAAACTTGAAAGGGTTGGATGGCCTCCAGGGTCCAGTCTATGTGGGAACTGGTTGTTGTTTCAATCGGCAAGCTTTATATGGTTATGATCCAGTTCTGACCGAGGCAGATTTGGAACCGAATATTATCATTAAGAGTTGTTGTGGTTCAAGAAAGAAGGGCAGGAACAAGAAGTACATCGACAAAAAGAGGGCTGCAAAGAGGACTGAATCTACCATTCCTATCTTTAATATGGAAGATATTGAGGAAGGCGTTGAAGGATATGATGATGAGAGGTCACTCCTGATGTCTCAGAAGAGTTTAGAGAAGCGCTTTGGCCAATCTCCAGTTTTTATTGCAGCCACTTTCATGGAACAGGGAGGTATTCCACCTTCCACCAATCCTGCAACTCTTCTAAAGGAAGCAATTCATGTTATCAGTTGTGGATATGAAGATAAGACAGAATGGGGCAAAGAGATTGGGTGGATCTATGGTTCTGTGACAGAAGATATTTTGACTGGGTTTAAGATGCATGCTCGCGGGTGGATATCAATTTACTGCATGCCTCCACGCCCGGCATTCAAGGGATCTGCTCCCATCAATCTTTCTGATCGTTTAAACCAGGTGCTTCGATGGGCTTTGGGTTCCATAGAAATCTTGCTGAGCAGGCATTGTCCTATCTGGTATGGCTACAATGGAAGGCTGAAGCTTTTGGAGAGAATAGCATACATCAATACTATCGTCTACCCTATCACCTCAATTCCACTTATTGCTTACTGTATGCTTCCGGCGTTCTGTCTGTTGACTGGAAAGTTCATTATTCCTGAGATAAGCAACTTTGCCAGTATGTGGTTCATTCTCCTTTTCGTCTCCATCTTTGCAACGGGCATTCTTGAACTCAGATGGAGTGGTGTTAGTATTGAAGACTGGTGGAGGAACGAACAATTTTGGGTCATTGGTGGTACTTCAGCTCATCTGTTCGCCGTCTTCCAGGGTCTCTTAAAGGTTCTTGCTGGAATCGATACCAACTTCACTGTGACGTCGAAGGCCAGCGATGACGATGGGGATTTTGCAGAGCTTTATGTGTTCAAATGGACTTCTCTCCTCATCCCACCTACCACTGTCCTGATTATGAATATGGTTGGTATAGTGGCTGGTGTATCATATGCCATTAACAGTGGTTACCAGTCTTGGGGTCCTCTCTTTGGTAAGCTGTTCTTTGCATTGTGGGTTATTGTCCATTTATATCCTTTCCTAAAGGGTTTACTGGGAAGGCAAAATCGTACACCGACCATTGTCATTGTCTGGTCCATTCTCCTTGCTTCCATTTTCTCATTGCTCTGGGTGCGAATCGATCCATTTACCTCAGCCTCGACAAAGGCTGCTAACGGTCAATGTGGTATCAACTGCTAG 3249 44.94 MEANAGLVAGSYKRNELVRIRHDSDSGPKPLKNLNSQTCQICGDTVGLTASGDVFVACNECAFPVCRPCYEYERKDGNQSCPQCKTRYKRHKGSPRVDGDDDEDDVDDIENEFNYVQGSGKTKRQWHGEDVELSTSARHESQQPIPLLTNGQSVSGEIPCATPDNQSVRTTSGPLGPPEKHMQSHPYVDPRQPVPVRIVDPSKDLNSYGLGNVDWKERVEGWKLKQEKNIMQMTSRYTEGKGDMEGTGSNGEELQMADDARQPLSRVVPIPSSHLTPYRVVIILRLIILGFFLQYRLTHPVKDAYPLWLTSVICEVWFALSWLLDQFPKWSPVNRETFLERLALRYDREGEPSQLAPVDVFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGSAMLTFEALSETAEFARKWVPFCKKHNIEPRAPEFYFAQKIDYLKDKIKPSFVKERRAMKREYEEFKIRINALVAKAQKMPEEGWTMQDGTPWPGNNPRDHPGMIQVFLGHSGGLDTDGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCFMMDPAYGKKTCYVQFPQRFDGIDLHDRYANRNIVFFDINLKGLDGLQGPVYVGTGCCFNRQALYGYDPVLTEADLEPNIIIKSCCGSRKKGRNKKYIDKKRAAKRTESTIPIFNMEDIEEGVEGYDDERSLLMSQKSLEKRFGQSPVFIAATFMEQGGIPPSTNPATLLKEAIHVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISIYCMPPRPAFKGSAPINLSDRLNQVLRWALGSIEILLSRHCPIWYGYNGRLKLLERIAYINTIVYPITSIPLIAYCMLPAFCLLTGKFIIPEISNFASMWFILLFVSIFATGILELRWSGVSIEDWWRNEQFWVIGGTSAHLFAVFQGLLKVLAGIDTNFTVTSKASDDDGDFAELYVFKWTSLLIPPTTVLIMNMVGIVAGVSYAINSGYQSWGPLFGKLFFALWVIVHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVRIDPFTSASTKAANGQCGINC 1082
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 27568443 27574276 - CaPI482276_05g018610.1 Cam05g1861 127265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam05g1861 1082 MobiDBLite consensus disorder prediction 76 105 - -
Cam05g1861 1082 Coils Coil 456 476 - -
Cam05g1861 1082 Pfam Cellulose synthase 358 1073 IPR005150 GO:0016020(InterPro)|GO:0016760(InterPro)|GO:0030244(InterPro)
Cam05g1861 1082 Pfam Zinc-binding RING-finger 29 106 IPR027934 -
Cam05g1861 1082 MobiDBLite consensus disorder prediction 160 193 - -
Cam05g1861 1082 FunFam Cellulose synthase 21 112 - -
Cam05g1861 1082 SUPERFAMILY Nucleotide-diphospho-sugar transferases 376 650 IPR029044 -
Cam05g1861 1082 CDD mRING-HC-C4C4_CesA 37 87 - -
Cam05g1861 1082 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 21 112 IPR013083 -
Cam05g1861 1082 ProSiteProfiles Zinc finger RING-type profile. 39 85 IPR001841 -
Cam05g1861 1082 FunFam Cellulose synthase 475 649 - -
Cam05g1861 1082 SUPERFAMILY RING/U-box 22 111 - -
Cam05g1861 1082 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 346 446 IPR029044 -
Cam05g1861 1082 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 516 653 IPR029044 -
Cam05g1861 1082 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 266 1051 - GO:0005802(PANTHER)|GO:0005886(PANTHER)|GO:0009833(PANTHER)|GO:0016759(PANTHER)|GO:0030244(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam05g1861 Cam-Chr5:27568443 Cam09g0410 Cam-Chr9:4447227 0.00E+00 dispersed
Cam05g1861 Cam-Chr5:27568443 Cam02g0928 Cam-Chr2:13097730 2.20E-118 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam05g1861 K10999 - csv:101205724 2199.48