Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam05g1878 ATGAGTAGGGAAAATGTTACTGTTCAAGTTGAAGAGTGCTCCGGCAGAATCACAAGAGCACGGGCGAAAGAGCTAAGCGAATCAGGAGGCATTCTATGCTCCTCAAAATCATCTGGAGTTCAGAAACATATTCTACGAACTAACTCAAAAAGAATGGCATCTGATGACATTACGATTTGTTCAATTTCTTCCAATGGCCTTCCTAATAAAAGAAGAGCAGTGCTCAAGGATGTGACTAACATTTCCACCAAAGATTTTGATAAGAATTGCAGAAATGCTTCTAACATTCAGGGTGCCAAGCCAACTAGAAGAGTTTCTGCAAAAGCTAAGGCAAATGCGCCTTTAAATGCTCCTGTAGAAATTCTAGGTGCAGAAGAAGATGCAAACACAAGACTAGCTGAGGATTTATCTAAAATAAGGGTGGTAGAATCACGAGAAGTCTCTTTAAGAGGAACTTTGGATGGAAAAGAGAGAACCGTGCAAACTACGAGTCACACCAGCAGAGAATGTGGAGTTTCAGATATGATTCTCTCTGTATCTTCAGAAGAATCTATCCCTCAGCCAAATGAAAAATTTATCGCACCTGAACAATCGGCAGCATTAAGTGATAAAGGTGTTATAGACATTGATTCAAACTCCAAATGTCTTCAATCATGCAGCATATATGCTCCAGACATATATGACAGGATACGTGTGACAGAGCTTGATCAAAGGGCCTCAACTACCTATATGGAACAGTTGCAGCAAGATATCACTGCAAACATGCGAGGAATACTGGTTGATTGGCTTGTAGAGGTGTCTGAAGAATATAATCTAGTTTCAGATACACTCTATCTCACTGTGAATGTCATCGATCGGTTTCTCTCTCAAAATTATATTGAAAAAAAGCGACTACAACTTGTTGGTGTTGCAAGCATGCTTATTGCATCAAAATATGAGGAGATCTGTGCACCGCGAGTGGAAGATTTCTGCTTCATTACAGATAATACTTACACAAAAGCAGAGGTAGTAGAAATGGAGAGTGAAGTTTTGAACTTACTGCACTTTCGGCTATCTGTTCCCACTACAAAGACATTTCTAAGGAGATTTATACAATCAGCTCATGCTTCTTACAAGGTTCCTTGCATTGAACTTGAGTTTTTGGCCAATTATTTAGCTGAGTTGACTCTTGTTGAATACAGCTTCCTAAAGTTCCTTCCTTCTCTGATCGCGGCGTCTGCCGTTTTTCTTGCGAGATGGACACTTGACCAATCGGATCATCCGTGGAATCCAACTCTAGAGCACTATACCAGTTACAACGTTTCTCAGCTGAAAACTGCTGTGCTTGCCCTCCAAGACTTGCAACTTAACACCAGTGCTTCCTCGCTAAATGCCATACGTCAGAAGTATAGACAACCGAAGTTCAAATGCGTAGCAACGTTAACAGCAACGAAATCGGTTCTATCCCTATTTTGA 1455 40.69 MSRENVTVQVEECSGRITRARAKELSESGGILCSSKSSGVQKHILRTNSKRMASDDITICSISSNGLPNKRRAVLKDVTNISTKDFDKNCRNASNIQGAKPTRRVSAKAKANAPLNAPVEILGAEEDANTRLAEDLSKIRVVESREVSLRGTLDGKERTVQTTSHTSRECGVSDMILSVSSEESIPQPNEKFIAPEQSAALSDKGVIDIDSNSKCLQSCSIYAPDIYDRIRVTELDQRASTTYMEQLQQDITANMRGILVDWLVEVSEEYNLVSDTLYLTVNVIDRFLSQNYIEKKRLQLVGVASMLIASKYEEICAPRVEDFCFITDNTYTKAEVVEMESEVLNLLHFRLSVPTTKTFLRRFIQSAHASYKVPCIELEFLANYLAELTLVEYSFLKFLPSLIAASAVFLARWTLDQSDHPWNPTLEHYTSYNVSQLKTAVLALQDLQLNTSASSLNAIRQKYRQPKFKCVATLTATKSVLSLF 484
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 27696219 27701384 + CaPI482276_05g018780.1 Cam05g1878 127282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam05g1878 484 Pfam Cyclin, C-terminal domain 354 475 IPR004367 -
Cam05g1878 484 SUPERFAMILY Cyclin-like 217 351 IPR036915 -
Cam05g1878 484 Gene3D - 225 473 - -
Cam05g1878 484 PANTHER CYCLINS 203 465 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Cam05g1878 484 CDD CYCLIN_AtCycA-like_rpt2 354 468 - -
Cam05g1878 484 SMART cyclin_7 358 446 IPR013763 -
Cam05g1878 484 SMART cyclin_7 261 345 IPR013763 -
Cam05g1878 484 FunFam Cyclin A1 341 473 - -
Cam05g1878 484 ProSitePatterns Cyclins signature. 256 287 IPR048258 -
Cam05g1878 484 SUPERFAMILY Cyclin-like 353 478 IPR036915 -
Cam05g1878 484 Pfam Cyclin, N-terminal domain 225 352 IPR006671 -
Cam05g1878 484 PIRSF Cyclin_A_B_D_E 34 483 IPR046965 GO:0016538(InterPro)|GO:0044772(InterPro)
Cam05g1878 484 FunFam Mitotic cyclin 6 239 339 - -
Cam05g1878 484 SMART Cyclin_C_2 354 477 IPR004367 -
Cam05g1878 484 Gene3D - 239 352 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam05g1878 Cam-Chr5:27696219 Cam09g0235 Cam-Chr9:2993662 1.10E-112 dispersed
Cam04g0578 Cam-Chr4:19471980 Cam05g1878 Cam-Chr5:27696219 2.40E-42 transposed
Cam11g1887 Cam-Chr11:31406877 Cam05g1878 Cam-Chr5:27696219 1.90E-47 transposed
Cam05g1878 Cam-Chr5:27696219 Cam08g1748 Cam-Chr8:23722187 7.60E-111 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam05g1878 K06627 - csv:101204275 864.759