Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cam05g1878 | ATGAGTAGGGAAAATGTTACTGTTCAAGTTGAAGAGTGCTCCGGCAGAATCACAAGAGCACGGGCGAAAGAGCTAAGCGAATCAGGAGGCATTCTATGCTCCTCAAAATCATCTGGAGTTCAGAAACATATTCTACGAACTAACTCAAAAAGAATGGCATCTGATGACATTACGATTTGTTCAATTTCTTCCAATGGCCTTCCTAATAAAAGAAGAGCAGTGCTCAAGGATGTGACTAACATTTCCACCAAAGATTTTGATAAGAATTGCAGAAATGCTTCTAACATTCAGGGTGCCAAGCCAACTAGAAGAGTTTCTGCAAAAGCTAAGGCAAATGCGCCTTTAAATGCTCCTGTAGAAATTCTAGGTGCAGAAGAAGATGCAAACACAAGACTAGCTGAGGATTTATCTAAAATAAGGGTGGTAGAATCACGAGAAGTCTCTTTAAGAGGAACTTTGGATGGAAAAGAGAGAACCGTGCAAACTACGAGTCACACCAGCAGAGAATGTGGAGTTTCAGATATGATTCTCTCTGTATCTTCAGAAGAATCTATCCCTCAGCCAAATGAAAAATTTATCGCACCTGAACAATCGGCAGCATTAAGTGATAAAGGTGTTATAGACATTGATTCAAACTCCAAATGTCTTCAATCATGCAGCATATATGCTCCAGACATATATGACAGGATACGTGTGACAGAGCTTGATCAAAGGGCCTCAACTACCTATATGGAACAGTTGCAGCAAGATATCACTGCAAACATGCGAGGAATACTGGTTGATTGGCTTGTAGAGGTGTCTGAAGAATATAATCTAGTTTCAGATACACTCTATCTCACTGTGAATGTCATCGATCGGTTTCTCTCTCAAAATTATATTGAAAAAAAGCGACTACAACTTGTTGGTGTTGCAAGCATGCTTATTGCATCAAAATATGAGGAGATCTGTGCACCGCGAGTGGAAGATTTCTGCTTCATTACAGATAATACTTACACAAAAGCAGAGGTAGTAGAAATGGAGAGTGAAGTTTTGAACTTACTGCACTTTCGGCTATCTGTTCCCACTACAAAGACATTTCTAAGGAGATTTATACAATCAGCTCATGCTTCTTACAAGGTTCCTTGCATTGAACTTGAGTTTTTGGCCAATTATTTAGCTGAGTTGACTCTTGTTGAATACAGCTTCCTAAAGTTCCTTCCTTCTCTGATCGCGGCGTCTGCCGTTTTTCTTGCGAGATGGACACTTGACCAATCGGATCATCCGTGGAATCCAACTCTAGAGCACTATACCAGTTACAACGTTTCTCAGCTGAAAACTGCTGTGCTTGCCCTCCAAGACTTGCAACTTAACACCAGTGCTTCCTCGCTAAATGCCATACGTCAGAAGTATAGACAACCGAAGTTCAAATGCGTAGCAACGTTAACAGCAACGAAATCGGTTCTATCCCTATTTTGA | 1455 | 40.69 | MSRENVTVQVEECSGRITRARAKELSESGGILCSSKSSGVQKHILRTNSKRMASDDITICSISSNGLPNKRRAVLKDVTNISTKDFDKNCRNASNIQGAKPTRRVSAKAKANAPLNAPVEILGAEEDANTRLAEDLSKIRVVESREVSLRGTLDGKERTVQTTSHTSRECGVSDMILSVSSEESIPQPNEKFIAPEQSAALSDKGVIDIDSNSKCLQSCSIYAPDIYDRIRVTELDQRASTTYMEQLQQDITANMRGILVDWLVEVSEEYNLVSDTLYLTVNVIDRFLSQNYIEKKRLQLVGVASMLIASKYEEICAPRVEDFCFITDNTYTKAEVVEMESEVLNLLHFRLSVPTTKTFLRRFIQSAHASYKVPCIELEFLANYLAELTLVEYSFLKFLPSLIAASAVFLARWTLDQSDHPWNPTLEHYTSYNVSQLKTAVLALQDLQLNTSASSLNAIRQKYRQPKFKCVATLTATKSVLSLF | 484 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 27696219 | 27701384 | + | CaPI482276_05g018780.1 | Cam05g1878 | 127282 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cam05g1878 | 484 | Pfam | Cyclin, C-terminal domain | 354 | 475 | IPR004367 | - | |
Cam05g1878 | 484 | SUPERFAMILY | Cyclin-like | 217 | 351 | IPR036915 | - | |
Cam05g1878 | 484 | Gene3D | - | 225 | 473 | - | - | |
Cam05g1878 | 484 | PANTHER | CYCLINS | 203 | 465 | IPR039361 | GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER) | |
Cam05g1878 | 484 | CDD | CYCLIN_AtCycA-like_rpt2 | 354 | 468 | - | - | |
Cam05g1878 | 484 | SMART | cyclin_7 | 358 | 446 | IPR013763 | - | |
Cam05g1878 | 484 | SMART | cyclin_7 | 261 | 345 | IPR013763 | - | |
Cam05g1878 | 484 | FunFam | Cyclin A1 | 341 | 473 | - | - | |
Cam05g1878 | 484 | ProSitePatterns | Cyclins signature. | 256 | 287 | IPR048258 | - | |
Cam05g1878 | 484 | SUPERFAMILY | Cyclin-like | 353 | 478 | IPR036915 | - | |
Cam05g1878 | 484 | Pfam | Cyclin, N-terminal domain | 225 | 352 | IPR006671 | - | |
Cam05g1878 | 484 | PIRSF | Cyclin_A_B_D_E | 34 | 483 | IPR046965 | GO:0016538(InterPro)|GO:0044772(InterPro) | |
Cam05g1878 | 484 | FunFam | Mitotic cyclin 6 | 239 | 339 | - | - | |
Cam05g1878 | 484 | SMART | Cyclin_C_2 | 354 | 477 | IPR004367 | - | |
Cam05g1878 | 484 | Gene3D | - | 239 | 352 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cam05g1878 | Cam-Chr5:27696219 | Cam09g0235 | Cam-Chr9:2993662 | 1.10E-112 | dispersed | |
Cam04g0578 | Cam-Chr4:19471980 | Cam05g1878 | Cam-Chr5:27696219 | 2.40E-42 | transposed | |
Cam11g1887 | Cam-Chr11:31406877 | Cam05g1878 | Cam-Chr5:27696219 | 1.90E-47 | transposed | |
Cam05g1878 | Cam-Chr5:27696219 | Cam08g1748 | Cam-Chr8:23722187 | 7.60E-111 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cam05g1878 | K06627 | - | csv:101204275 | 864.759 |